Wall clock time and date at job start Mon Mar 30 2020 00:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46980 * 2 1 4 4 C 1.52999 * 109.47306 * 239.99643 * 2 1 3 5 5 N 1.46506 * 109.46951 * 185.00239 * 4 2 1 6 6 C 1.34777 * 119.99507 * 180.02562 * 5 4 2 7 7 O 1.21282 * 120.00438 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.99537 * 179.97438 * 6 5 4 9 9 C 1.52999 * 109.46982 * 179.97438 * 8 6 5 10 10 N 1.46500 * 109.47084 * 179.97438 * 9 8 6 11 11 C 1.34429 * 126.81895 * 124.99739 * 10 9 8 12 12 N 1.30837 * 108.07952 * 180.02562 * 11 10 9 13 13 C 1.33246 * 109.82318 * 359.97438 * 12 11 10 14 14 N 1.30712 * 108.94935 * 0.27015 * 13 12 11 15 15 N 1.46507 * 109.46953 * 119.99714 * 2 1 3 16 16 C 1.36941 * 119.99870 * 275.00054 * 15 2 1 17 17 H 1.08003 * 119.99826 * 0.02562 * 16 15 2 18 18 C 1.38811 * 119.99683 * 179.97438 * 16 15 2 19 19 N 1.31618 * 120.00185 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99617 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47317 * 60.00634 * 20 18 16 22 22 H 1.48507 * 109.47096 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47616 * 300.00544 * 20 18 16 24 24 H 1.08997 * 109.46980 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47354 * 300.00282 * 1 2 3 26 26 H 1.09003 * 109.46965 * 60.00848 * 1 2 3 27 27 H 1.08993 * 109.47011 * 64.99986 * 4 2 1 28 28 H 1.08996 * 109.46981 * 304.99893 * 4 2 1 29 29 H 0.96992 * 119.99953 * 359.97438 * 5 4 2 30 30 H 1.09002 * 109.47233 * 59.99445 * 8 6 5 31 31 H 1.08996 * 109.47047 * 299.99315 * 8 6 5 32 32 H 1.09002 * 109.47279 * 59.99854 * 9 8 6 33 33 H 1.08995 * 109.47424 * 300.00033 * 9 8 6 34 34 H 1.08000 * 125.96340 * 359.97438 * 11 10 9 35 35 H 1.08002 * 125.52127 * 179.97438 * 13 12 11 36 36 H 0.96997 * 120.00039 * 94.99769 * 15 2 1 37 37 H 0.96999 * 119.99768 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8265 -1.1904 6 6 4.1732 -1.4284 -2.1910 7 8 3.5701 -1.8835 -3.1398 8 6 5.6751 -1.5361 -2.1308 9 6 6.1852 -2.2575 -3.3799 10 7 7.6453 -2.3616 -3.3217 11 6 8.3772 -3.4852 -3.4156 12 7 9.6398 -3.1568 -3.3166 13 6 9.7529 -1.8384 -3.1600 14 7 8.5582 -1.3080 -3.1513 15 7 2.0183 -0.6906 1.1963 16 6 2.1491 -0.0074 2.3758 17 1 1.8918 1.0405 2.4243 18 6 2.6112 -0.6618 3.5094 19 7 2.9242 -1.9389 3.4503 20 14 2.7902 0.2703 5.1182 21 1 1.4682 0.8081 5.5285 22 1 3.2991 -0.6481 6.1685 23 1 3.7462 1.3921 4.9367 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8901 27 1 1.7517 -0.1585 -2.1369 28 1 1.6055 -1.7198 -1.2950 29 1 3.9824 -0.4622 -0.4318 30 1 5.9638 -2.0990 -1.2431 31 1 6.1094 -0.5374 -2.0849 32 1 5.8965 -1.6949 -4.2678 33 1 5.7509 -3.2561 -3.4255 34 1 7.9905 -4.4848 -3.5485 35 1 10.6809 -1.2966 -3.0525 36 1 2.2490 -1.6317 1.1528 37 1 3.2475 -2.3961 4.2424 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690553594.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:27 Heat of formation + Delta-G solvation = 57.925830 kcal Electronic energy + Delta-G solvation = -19623.607168 eV Core-core repulsion = 16438.167749 eV Total energy + Delta-G solvation = -3185.439419 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.18170 -39.59297 -36.50696 -34.92412 -33.64320 -31.99051 -31.35490 -30.63858 -28.78220 -26.38914 -24.49363 -23.61545 -22.13386 -21.64345 -20.31411 -19.87726 -17.80931 -17.41595 -16.53304 -16.05655 -15.78741 -15.46383 -14.96978 -14.80178 -14.31068 -14.09187 -13.68176 -13.46436 -13.09483 -12.65789 -12.41931 -12.18975 -12.14967 -11.96384 -11.45295 -11.39174 -10.91192 -10.81855 -10.43885 -10.21593 -10.10880 -9.99788 -9.91198 -9.78276 -9.66910 -9.04853 -8.76153 -7.11928 -5.88350 -3.18985 1.47977 2.10946 2.75309 2.82528 3.36307 3.41644 3.42552 3.44882 4.17272 4.30099 4.48941 4.58796 4.71870 4.95126 5.05007 5.20128 5.38734 5.40369 5.49414 5.53309 5.64322 5.86058 6.00588 6.07301 6.11330 6.23696 6.27508 6.48942 6.61740 6.66660 6.73455 6.96122 7.59186 7.77319 7.92167 8.29102 8.38448 9.41185 9.95126 10.30733 11.33496 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.017783 B = 0.004031 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.162892 B = 6944.393909 C = 8131.049483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.159 3.841 3 H 0.054 0.946 4 C 0.115 3.885 5 N -0.707 5.707 6 C 0.517 3.483 7 O -0.559 6.559 8 C -0.154 4.154 9 C 0.147 3.853 10 N -0.377 5.377 11 C 0.256 3.744 12 N -0.551 5.551 13 C 0.195 3.805 14 N -0.318 5.318 15 N -0.724 5.724 16 C -0.246 4.246 17 H 0.071 0.929 18 C -0.009 4.009 19 N -0.931 5.931 20 Si 0.907 3.093 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.285 1.285 24 H 0.049 0.951 25 H 0.058 0.942 26 H 0.039 0.961 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.412 0.588 30 H 0.102 0.898 31 H 0.107 0.893 32 H 0.098 0.902 33 H 0.111 0.889 34 H 0.219 0.781 35 H 0.216 0.784 36 H 0.385 0.615 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.747 -0.350 -13.253 14.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.049 3.951 3 H 0.072 0.928 4 C -0.010 4.010 5 N -0.358 5.358 6 C 0.302 3.698 7 O -0.439 6.439 8 C -0.195 4.195 9 C 0.025 3.975 10 N -0.168 5.168 11 C -0.041 4.041 12 N -0.279 5.279 13 C -0.108 4.108 14 N -0.146 5.146 15 N -0.367 5.367 16 C -0.377 4.377 17 H 0.089 0.911 18 C -0.205 4.205 19 N -0.578 5.578 20 Si 0.738 3.262 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.212 1.212 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.058 0.942 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.249 0.751 30 H 0.120 0.880 31 H 0.125 0.875 32 H 0.116 0.884 33 H 0.129 0.871 34 H 0.235 0.765 35 H 0.232 0.768 36 H 0.219 0.781 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.365 0.000 -13.690 15.097 hybrid contribution 0.121 0.143 1.451 1.463 sum 6.486 0.143 -12.238 13.851 Atomic orbital electron populations 1.22364 0.98247 1.01300 1.00424 1.20516 0.92745 0.95762 0.86116 0.92842 1.21722 0.79267 1.01231 0.98777 1.45980 1.08461 1.58178 1.23216 1.20186 0.89008 0.77996 0.82604 1.90685 1.70481 1.48960 1.33768 1.21854 0.93605 1.04437 0.99582 1.21566 0.72399 1.04070 0.99443 1.50644 1.08061 1.05191 1.52885 1.26114 0.87166 0.94299 0.96552 1.70550 1.18101 1.14448 1.24762 1.26010 0.96797 0.89550 0.98423 1.78039 0.99690 1.11681 1.25212 1.42468 1.78134 1.10796 1.05265 1.19182 1.37236 0.93900 0.87355 0.91137 1.24739 1.01854 0.95897 0.98042 1.69647 1.50403 1.08650 1.29143 0.86284 0.77825 0.78617 0.83516 1.21238 1.21689 1.21214 0.93192 0.92279 0.94168 0.91716 0.91704 0.75095 0.87994 0.87505 0.88375 0.87075 0.76451 0.76778 0.78116 0.93356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 9.49 37.16 0.35 -2.37 16 2 C 0.16 2.86 3.05 -67.93 -0.21 2.65 16 3 H 0.05 0.96 8.08 -51.93 -0.42 0.55 16 4 C 0.11 1.83 5.23 -4.04 -0.02 1.81 16 5 N -0.71 -10.86 5.39 -60.29 -0.32 -11.19 16 6 C 0.52 7.44 7.83 -10.98 -0.09 7.36 16 7 O -0.56 -9.37 15.98 5.56 0.09 -9.28 16 8 C -0.15 -1.76 5.91 -27.88 -0.16 -1.92 16 9 C 0.15 1.47 5.84 -4.04 -0.02 1.44 16 10 N -0.38 -4.11 3.69 -62.63 -0.23 -4.34 16 11 C 0.26 2.49 12.63 -90.65 -1.14 1.35 16 12 N -0.55 -6.49 11.19 -15.83 -0.18 -6.66 16 13 C 0.20 2.17 13.03 -91.81 -1.20 0.98 16 14 N -0.32 -3.98 12.56 29.29 0.37 -3.61 16 15 N -0.72 -16.47 4.56 -53.42 -0.24 -16.72 16 16 C -0.25 -6.33 9.93 -15.06 -0.15 -6.48 16 17 H 0.07 1.77 7.83 -52.48 -0.41 1.36 16 18 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 19 N -0.93 -26.66 13.06 55.49 0.72 -25.94 16 20 Si 0.91 21.43 29.55 -169.99 -5.02 16.40 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 24 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.41 6.54 8.14 -40.82 -0.33 6.21 16 30 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.10 1.00 8.10 -51.93 -0.42 0.58 16 33 H 0.11 0.93 8.04 -51.93 -0.42 0.51 16 34 H 0.22 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.22 1.61 8.06 -52.49 -0.42 1.19 16 36 H 0.38 9.48 7.80 -40.82 -0.32 9.17 16 37 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 325.16 15.07 4.90 4.90 Total: -1.00 -32.04 325.16 -7.91 -39.95 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -5.26 Total: 11.99 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: -2.74 Total: 4.49 kcal Atomic # 7 Polarization: -68.57 SS G_CDS: 0.12 Total: -68.46 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.09 Total: -9.28 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.04 -7.91 -39.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690553594.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.879 kcal (2) G-P(sol) polarization free energy of solvation -32.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds