Wall clock time and date at job start Mon Mar 30 2020 00:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46980 * 2 1 4 4 C 1.52999 * 109.47306 * 239.99643 * 2 1 3 5 5 N 1.46506 * 109.46951 * 185.00239 * 4 2 1 6 6 C 1.34777 * 119.99507 * 180.02562 * 5 4 2 7 7 O 1.21282 * 120.00438 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.99537 * 179.97438 * 6 5 4 9 9 C 1.52999 * 109.46982 * 179.97438 * 8 6 5 10 10 N 1.46500 * 109.47084 * 179.97438 * 9 8 6 11 11 C 1.34429 * 126.81895 * 124.99739 * 10 9 8 12 12 N 1.30837 * 108.07952 * 180.02562 * 11 10 9 13 13 C 1.33246 * 109.82318 * 359.97438 * 12 11 10 14 14 N 1.30712 * 108.94935 * 0.27015 * 13 12 11 15 15 N 1.46507 * 109.46953 * 119.99714 * 2 1 3 16 16 C 1.36941 * 119.99870 * 275.00054 * 15 2 1 17 17 H 1.08003 * 119.99826 * 0.02562 * 16 15 2 18 18 C 1.38811 * 119.99683 * 179.97438 * 16 15 2 19 19 N 1.31618 * 120.00185 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99617 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47317 * 60.00634 * 20 18 16 22 22 H 1.48507 * 109.47096 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47616 * 300.00544 * 20 18 16 24 24 H 1.08997 * 109.46980 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47354 * 300.00282 * 1 2 3 26 26 H 1.09003 * 109.46965 * 60.00848 * 1 2 3 27 27 H 1.08993 * 109.47011 * 64.99986 * 4 2 1 28 28 H 1.08996 * 109.46981 * 304.99893 * 4 2 1 29 29 H 0.96992 * 119.99953 * 359.97438 * 5 4 2 30 30 H 1.09002 * 109.47233 * 59.99445 * 8 6 5 31 31 H 1.08996 * 109.47047 * 299.99315 * 8 6 5 32 32 H 1.09002 * 109.47279 * 59.99854 * 9 8 6 33 33 H 1.08995 * 109.47424 * 300.00033 * 9 8 6 34 34 H 1.08000 * 125.96340 * 359.97438 * 11 10 9 35 35 H 1.08002 * 125.52127 * 179.97438 * 13 12 11 36 36 H 0.96997 * 120.00039 * 94.99769 * 15 2 1 37 37 H 0.96999 * 119.99768 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8265 -1.1904 6 6 4.1732 -1.4284 -2.1910 7 8 3.5701 -1.8835 -3.1398 8 6 5.6751 -1.5361 -2.1308 9 6 6.1852 -2.2575 -3.3799 10 7 7.6453 -2.3616 -3.3217 11 6 8.3772 -3.4852 -3.4156 12 7 9.6398 -3.1568 -3.3166 13 6 9.7529 -1.8384 -3.1600 14 7 8.5582 -1.3080 -3.1513 15 7 2.0183 -0.6906 1.1963 16 6 2.1491 -0.0074 2.3758 17 1 1.8918 1.0405 2.4243 18 6 2.6112 -0.6618 3.5094 19 7 2.9242 -1.9389 3.4503 20 14 2.7902 0.2703 5.1182 21 1 1.4682 0.8081 5.5285 22 1 3.2991 -0.6481 6.1685 23 1 3.7462 1.3921 4.9367 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8901 27 1 1.7517 -0.1585 -2.1369 28 1 1.6055 -1.7198 -1.2950 29 1 3.9824 -0.4622 -0.4318 30 1 5.9638 -2.0990 -1.2431 31 1 6.1094 -0.5374 -2.0849 32 1 5.8965 -1.6949 -4.2678 33 1 5.7509 -3.2561 -3.4255 34 1 7.9905 -4.4848 -3.5485 35 1 10.6809 -1.2966 -3.0525 36 1 2.2490 -1.6317 1.1528 37 1 3.2475 -2.3961 4.2424 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690553594.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:26 Heat of formation + Delta-G solvation = 37.155444 kcal Electronic energy + Delta-G solvation = -19624.507840 eV Core-core repulsion = 16438.167749 eV Total energy + Delta-G solvation = -3186.340091 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.97992 -40.79717 -37.99225 -35.82932 -35.18875 -33.65554 -32.17743 -31.63563 -30.49877 -27.56145 -25.86702 -25.17262 -22.90663 -22.51256 -21.73166 -21.09172 -19.36370 -18.64434 -17.58486 -17.15352 -16.96824 -16.81363 -16.22092 -15.78790 -15.67802 -15.19854 -15.03538 -14.67261 -14.45234 -13.86146 -13.70403 -13.51422 -13.40014 -13.11286 -12.96771 -12.75140 -12.50763 -12.27520 -12.23767 -11.71373 -11.66058 -11.15220 -10.99232 -10.92492 -10.77974 -10.63276 -10.02749 -9.03071 -7.92906 -5.21461 0.69652 1.32479 1.50139 1.50746 1.56742 1.58894 2.02644 2.31066 2.57242 3.41559 3.48280 3.54755 3.67472 3.85341 3.89669 3.99677 4.14694 4.21222 4.35751 4.40611 4.64018 4.66994 4.74512 4.77982 4.87480 5.06564 5.26314 5.28128 5.40300 5.49253 5.55725 5.59104 5.88820 6.28237 6.54544 7.12677 7.18085 7.36070 8.08546 8.32802 9.29514 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.017783 B = 0.004031 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.162892 B = 6944.393909 C = 8131.049483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.158 3.842 3 H 0.058 0.942 4 C 0.123 3.877 5 N -0.712 5.712 6 C 0.520 3.480 7 O -0.580 6.580 8 C -0.142 4.142 9 C 0.152 3.848 10 N -0.384 5.384 11 C 0.261 3.739 12 N -0.579 5.579 13 C 0.192 3.808 14 N -0.352 5.352 15 N -0.732 5.732 16 C -0.237 4.237 17 H 0.077 0.923 18 C -0.068 4.068 19 N -0.966 5.966 20 Si 0.965 3.035 21 H -0.282 1.282 22 H -0.301 1.301 23 H -0.278 1.278 24 H 0.043 0.957 25 H 0.042 0.958 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.054 0.946 29 H 0.410 0.590 30 H 0.102 0.898 31 H 0.107 0.893 32 H 0.096 0.904 33 H 0.130 0.870 34 H 0.258 0.742 35 H 0.240 0.760 36 H 0.373 0.627 37 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.767 0.126 -14.060 15.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.049 3.951 3 H 0.076 0.924 4 C -0.001 4.001 5 N -0.362 5.362 6 C 0.306 3.694 7 O -0.462 6.462 8 C -0.182 4.182 9 C 0.030 3.970 10 N -0.174 5.174 11 C -0.035 4.035 12 N -0.306 5.306 13 C -0.110 4.110 14 N -0.180 5.180 15 N -0.373 5.373 16 C -0.369 4.369 17 H 0.095 0.905 18 C -0.261 4.261 19 N -0.617 5.617 20 Si 0.795 3.205 21 H -0.209 1.209 22 H -0.227 1.227 23 H -0.204 1.204 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.092 0.908 27 H 0.101 0.899 28 H 0.072 0.928 29 H 0.246 0.754 30 H 0.120 0.880 31 H 0.126 0.874 32 H 0.114 0.886 33 H 0.148 0.852 34 H 0.274 0.726 35 H 0.256 0.744 36 H 0.206 0.794 37 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 6.363 0.520 -14.532 15.872 hybrid contribution 0.083 0.017 1.608 1.611 sum 6.445 0.538 -12.923 14.451 Atomic orbital electron populations 1.22243 0.96848 1.01200 1.01323 1.20694 0.93575 0.95640 0.85162 0.92409 1.21579 0.79710 1.00581 0.98242 1.46020 1.08256 1.58493 1.23440 1.20577 0.90038 0.76986 0.81757 1.90674 1.71236 1.49779 1.34482 1.21745 0.91235 1.04775 1.00474 1.21570 0.72139 1.04917 0.98342 1.50665 1.08125 1.05305 1.53299 1.26927 0.86629 0.95365 0.94571 1.70584 1.19267 1.14825 1.25973 1.26585 0.97427 0.89693 0.97339 1.77985 1.00427 1.12982 1.26644 1.42592 1.78372 1.10319 1.06015 1.19534 1.34923 0.94175 0.88219 0.90535 1.25413 1.03028 0.96657 1.00975 1.69792 1.52480 1.10064 1.29321 0.85344 0.77780 0.77393 0.79992 1.20858 1.22729 1.20405 0.93813 0.93837 0.90767 0.89919 0.92752 0.75383 0.87958 0.87441 0.88619 0.85187 0.72638 0.74357 0.79449 0.94208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.93 9.49 71.98 0.68 -4.25 16 2 C 0.16 5.46 3.05 44.99 0.14 5.60 16 3 H 0.06 1.98 8.08 -2.39 -0.02 1.96 16 4 C 0.12 3.77 5.23 86.38 0.45 4.23 16 5 N -0.71 -21.17 5.39 -463.05 -2.49 -23.67 16 6 C 0.52 14.38 7.83 87.66 0.69 15.07 16 7 O -0.58 -18.66 15.98 -3.03 -0.05 -18.71 16 8 C -0.14 -3.07 5.91 29.85 0.18 -2.90 16 9 C 0.15 2.79 5.84 86.38 0.50 3.30 16 10 N -0.38 -7.80 3.69 -352.06 -1.30 -9.10 16 11 C 0.26 4.59 12.63 180.36 2.28 6.87 16 12 N -0.58 -12.82 11.19 -203.99 -2.28 -15.10 16 13 C 0.19 4.08 13.03 180.76 2.36 6.44 16 14 N -0.35 -8.50 12.56 -61.24 -0.77 -9.27 16 15 N -0.73 -32.98 4.56 -322.93 -1.47 -34.45 16 16 C -0.24 -12.04 9.93 84.03 0.83 -11.20 16 17 H 0.08 3.74 7.83 -2.91 -0.02 3.72 16 18 C -0.07 -3.67 5.50 84.86 0.47 -3.20 16 19 N -0.97 -55.98 13.06 21.65 0.28 -55.69 16 20 Si 0.96 44.02 29.55 68.60 2.03 46.05 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 22 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 23 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 24 H 0.04 1.42 8.14 -2.39 -0.02 1.41 16 25 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.41 12.75 8.14 -92.71 -0.75 12.00 16 30 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.10 1.82 8.10 -2.39 -0.02 1.80 16 33 H 0.13 1.88 8.04 -2.39 -0.02 1.86 16 34 H 0.26 1.98 8.06 -2.91 -0.02 1.96 16 35 H 0.24 3.32 8.06 -2.91 -0.02 3.30 16 36 H 0.37 18.49 7.80 -92.71 -0.72 17.77 16 37 H 0.25 14.25 8.31 -92.71 -0.77 13.47 16 Total: -1.00 -67.72 325.16 2.12 -65.60 By element: Atomic # 1 Polarization: 34.80 SS G_CDS: -0.39 Total: 34.41 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: 8.57 Total: 19.95 kcal Atomic # 7 Polarization: -139.25 SS G_CDS: -8.04 Total: -147.29 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.05 Total: -18.71 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -67.72 2.12 -65.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690553594.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.755 kcal (2) G-P(sol) polarization free energy of solvation -67.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds