Wall clock time and date at job start Mon Mar 30 2020 00:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46868 * 2 1 4 4 C 1.50700 * 109.47269 * 120.00359 * 2 1 3 5 5 O 1.21280 * 120.00134 * 120.00169 * 4 2 1 6 6 N 1.34775 * 119.99580 * 299.99706 * 4 2 1 7 7 C 1.46507 * 119.99866 * 180.02562 * 6 4 2 8 8 C 1.52995 * 109.47291 * 179.97438 * 7 6 4 9 9 N 1.46498 * 109.47417 * 179.97438 * 8 7 6 10 10 C 1.46493 * 120.00201 * 89.99789 * 9 8 7 11 11 C 1.36935 * 120.00132 * 270.00600 * 9 8 7 12 12 H 1.08010 * 119.99937 * 23.03889 * 11 9 8 13 13 C 1.38814 * 119.99994 * 203.04331 * 11 9 8 14 14 N 1.31614 * 120.00200 * 12.92666 * 13 11 9 15 15 Si 1.86799 * 119.99993 * 192.92179 * 13 11 9 16 16 H 1.48499 * 109.47125 * 60.00260 * 15 13 11 17 17 H 1.48498 * 109.47150 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47412 * 300.00231 * 15 13 11 19 19 N 1.46502 * 109.46658 * 240.00078 * 2 1 3 20 20 C 1.34424 * 126.82772 * 324.70742 * 19 2 1 21 21 N 1.30836 * 108.07972 * 179.89697 * 20 19 2 22 22 C 1.33240 * 109.82514 * 0.37936 * 21 20 19 23 23 N 1.30709 * 108.95028 * 359.76410 * 22 21 20 24 24 H 1.09000 * 109.46868 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46928 * 299.99745 * 1 2 3 26 26 H 1.09001 * 109.47415 * 60.00000 * 1 2 3 27 27 H 0.96997 * 120.00533 * 359.97438 * 6 4 2 28 28 H 1.08996 * 109.46759 * 300.00105 * 7 6 4 29 29 H 1.08998 * 109.46862 * 60.00154 * 7 6 4 30 30 H 1.09000 * 109.47267 * 300.00305 * 8 7 6 31 31 H 1.09004 * 109.46898 * 59.99839 * 8 7 6 32 32 H 1.08999 * 109.46998 * 95.12555 * 10 9 8 33 33 H 1.08994 * 109.47762 * 215.12684 * 10 9 8 34 34 H 1.09004 * 109.46947 * 335.12643 * 10 9 8 35 35 H 0.97001 * 120.00497 * 180.02562 * 14 13 11 36 36 H 1.08005 * 125.95812 * 0.04225 * 20 19 2 37 37 H 1.07996 * 125.52316 * 179.80123 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.7297 -1.6965 1.1191 6 7 1.7068 -0.2500 2.4545 7 6 2.1957 -0.9403 3.6507 8 6 1.6862 -0.2188 4.8999 9 7 2.1744 -0.9094 6.0961 10 6 3.4547 -0.5227 6.6939 11 6 1.4342 -1.9166 6.6553 12 1 0.7148 -2.4549 6.0559 13 6 1.6083 -2.2458 7.9926 14 7 2.2846 -1.4419 8.7855 15 14 0.8826 -3.8295 8.6668 16 1 1.4556 -4.9875 7.9349 17 1 1.2066 -3.9468 10.1113 18 1 -0.5917 -3.8128 8.4905 19 7 2.0183 -0.6906 -1.1962 20 6 1.4588 -1.7552 -1.7968 21 7 2.1940 -2.0702 -2.8321 22 6 3.2313 -1.2385 -2.9197 23 7 3.1674 -0.3757 -1.9399 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.1495 0.5389 2.5436 28 1 1.8327 -1.9681 3.6508 29 1 3.2856 -0.9399 3.6505 30 1 2.0494 0.8089 4.8996 31 1 0.5961 -0.2188 4.9003 32 1 3.2791 0.1919 7.4980 33 1 3.9502 -1.4067 7.0952 34 1 4.0875 -0.0654 5.9332 35 1 2.4067 -1.6721 9.7199 36 1 0.5580 -2.2606 -1.4812 37 1 3.9998 -1.2715 -3.6777 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690934931.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:10 Heat of formation + Delta-G solvation = 84.200086 kcal Electronic energy + Delta-G solvation = -19943.354070 eV Core-core repulsion = 16759.053988 eV Total energy + Delta-G solvation = -3184.300082 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.24502 -39.76865 -36.24870 -35.18875 -34.37535 -31.60298 -31.37642 -30.26636 -28.15900 -25.94374 -25.47574 -23.58171 -22.14810 -21.91935 -20.81213 -20.16396 -17.89305 -17.27769 -16.72400 -15.86930 -15.69147 -15.22891 -15.01146 -14.64044 -14.43494 -14.03902 -13.77565 -13.36756 -13.00487 -12.94437 -12.65241 -12.49074 -12.39591 -11.76676 -11.26479 -10.98887 -10.89338 -10.68873 -10.51825 -10.40846 -10.15191 -10.04997 -9.97532 -9.87129 -9.56545 -8.93671 -8.62190 -6.87231 -5.80353 -3.29222 1.45432 1.98218 2.45355 2.87336 3.15229 3.35101 3.40899 3.42478 4.07764 4.18132 4.34725 4.42863 4.51025 4.66189 4.98626 5.01622 5.18210 5.32559 5.46224 5.53734 5.68957 5.77061 6.06458 6.14019 6.30498 6.39222 6.52381 6.58336 6.67904 6.75356 7.30025 7.45498 7.64668 7.73300 7.94973 8.11952 8.31054 9.14336 9.76638 10.24376 11.24376 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.034484 B = 0.003480 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.764520 B = 8043.446420 C = 8239.475869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.137 3.863 3 H 0.131 0.869 4 C 0.496 3.504 5 O -0.525 6.525 6 N -0.714 5.714 7 C 0.094 3.906 8 C 0.144 3.856 9 N -0.596 5.596 10 C 0.160 3.840 11 C -0.264 4.264 12 H 0.069 0.931 13 C 0.006 3.994 14 N -0.905 5.905 15 Si 0.907 3.093 16 H -0.283 1.283 17 H -0.290 1.290 18 H -0.282 1.282 19 N -0.361 5.361 20 C 0.270 3.730 21 N -0.548 5.548 22 C 0.198 3.802 23 N -0.315 5.315 24 H 0.075 0.925 25 H 0.095 0.905 26 H 0.080 0.920 27 H 0.398 0.602 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.042 0.958 31 H 0.053 0.947 32 H 0.034 0.966 33 H 0.042 0.958 34 H -0.001 1.001 35 H 0.254 0.746 36 H 0.215 0.785 37 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.598 6.062 -18.047 19.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.030 3.970 3 H 0.148 0.852 4 C 0.278 3.722 5 O -0.400 6.400 6 N -0.366 5.366 7 C -0.032 4.032 8 C 0.015 3.985 9 N -0.319 5.319 10 C 0.016 3.984 11 C -0.394 4.394 12 H 0.086 0.914 13 C -0.193 4.193 14 N -0.550 5.550 15 Si 0.736 3.264 16 H -0.209 1.209 17 H -0.215 1.215 18 H -0.208 1.208 19 N -0.151 5.151 20 C -0.027 4.027 21 N -0.275 5.275 22 C -0.105 4.105 23 N -0.142 5.142 24 H 0.094 0.906 25 H 0.113 0.887 26 H 0.099 0.901 27 H 0.232 0.768 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.017 0.983 35 H 0.065 0.935 36 H 0.231 0.769 37 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -3.582 5.668 -17.914 19.128 hybrid contribution -0.651 -0.585 0.731 1.140 sum -4.233 5.084 -17.183 18.412 Atomic orbital electron populations 1.22187 0.90052 1.04690 1.05067 1.21271 0.96393 0.98055 0.81291 0.85174 1.20523 0.81503 0.85396 0.84754 1.90791 1.36996 1.25854 1.86355 1.46027 1.53037 1.31906 1.05669 1.22547 0.99502 0.97733 0.83393 1.20829 0.97762 0.93791 0.86073 1.43770 1.20241 1.40300 1.27569 1.20850 0.84723 0.99058 0.93800 1.19138 1.18991 1.08875 0.92356 0.91364 1.25033 0.99834 0.98690 0.95750 1.70055 1.44442 1.35616 1.04853 0.86309 0.78870 0.83371 0.77830 1.20931 1.21536 1.20827 1.50058 1.19025 1.24377 1.21624 1.25888 0.99225 0.87811 0.89768 1.70563 1.07325 1.28724 1.20890 1.25967 0.97234 0.90208 0.97103 1.78036 1.02632 1.25468 1.08031 0.90599 0.88676 0.90067 0.76762 0.91327 0.92101 0.94002 0.92819 0.94768 0.93906 0.98262 0.93546 0.76898 0.76706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.87 8.76 37.16 0.33 -0.55 16 2 C 0.14 1.29 3.77 -69.08 -0.26 1.03 16 3 H 0.13 1.01 8.14 -51.93 -0.42 0.59 16 4 C 0.50 6.71 7.22 -10.99 -0.08 6.63 16 5 O -0.52 -9.92 16.42 5.56 0.09 -9.82 16 6 N -0.71 -8.87 5.45 -60.29 -0.33 -9.19 16 7 C 0.09 1.60 6.00 -4.04 -0.02 1.58 16 8 C 0.14 2.67 5.76 -4.05 -0.02 2.64 16 9 N -0.60 -14.48 2.92 -181.13 -0.53 -15.01 16 10 C 0.16 3.87 8.98 59.84 0.54 4.41 16 11 C -0.26 -7.08 9.65 -15.06 -0.15 -7.23 16 12 H 0.07 1.78 7.86 -52.48 -0.41 1.36 16 13 C 0.01 0.16 5.10 -17.43 -0.09 0.07 16 14 N -0.91 -25.96 10.71 55.49 0.59 -25.37 16 15 Si 0.91 21.53 29.57 -169.99 -5.03 16.51 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 N -0.36 -4.34 3.04 -57.24 -0.17 -4.52 16 20 C 0.27 3.07 11.76 -90.66 -1.07 2.01 16 21 N -0.55 -7.13 11.19 -15.83 -0.18 -7.30 16 22 C 0.20 2.41 13.03 -91.82 -1.20 1.22 16 23 N -0.31 -4.32 12.70 29.29 0.37 -3.94 16 24 H 0.08 0.41 7.22 -51.93 -0.38 0.04 16 25 H 0.09 0.35 7.57 -51.93 -0.39 -0.04 16 26 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.40 3.42 7.89 -40.82 -0.32 3.10 16 28 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 31 H 0.05 0.95 8.04 -51.93 -0.42 0.53 16 32 H 0.03 0.88 7.34 -51.93 -0.38 0.50 16 33 H 0.04 1.12 7.34 -51.93 -0.38 0.74 16 34 H 0.00 -0.03 8.03 -51.93 -0.42 -0.44 16 35 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 36 H 0.21 1.61 7.32 -52.48 -0.38 1.23 16 37 H 0.22 1.77 8.06 -52.49 -0.42 1.34 16 LS Contribution 318.97 15.07 4.81 4.81 Total: -1.00 -35.93 318.97 -7.55 -43.48 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -5.15 Total: -1.44 kcal Atomic # 6 Polarization: 13.83 SS G_CDS: -2.02 Total: 11.81 kcal Atomic # 7 Polarization: -65.09 SS G_CDS: -0.24 Total: -65.34 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.09 Total: -9.82 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -35.93 -7.55 -43.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690934931.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.675 kcal (2) G-P(sol) polarization free energy of solvation -35.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds