Wall clock time and date at job start Mon Mar 30 2020 00:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46868 * 2 1 4 4 C 1.50700 * 109.47269 * 120.00359 * 2 1 3 5 5 O 1.21280 * 120.00134 * 120.00169 * 4 2 1 6 6 N 1.34775 * 119.99580 * 299.99706 * 4 2 1 7 7 C 1.46507 * 119.99866 * 180.02562 * 6 4 2 8 8 C 1.52995 * 109.47291 * 179.97438 * 7 6 4 9 9 N 1.46498 * 109.47417 * 179.97438 * 8 7 6 10 10 C 1.46493 * 120.00201 * 89.99789 * 9 8 7 11 11 C 1.36935 * 120.00132 * 270.00600 * 9 8 7 12 12 H 1.08010 * 119.99937 * 23.03889 * 11 9 8 13 13 C 1.38814 * 119.99994 * 203.04331 * 11 9 8 14 14 N 1.31614 * 120.00200 * 12.92666 * 13 11 9 15 15 Si 1.86799 * 119.99993 * 192.92179 * 13 11 9 16 16 H 1.48499 * 109.47125 * 60.00260 * 15 13 11 17 17 H 1.48498 * 109.47150 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47412 * 300.00231 * 15 13 11 19 19 N 1.46502 * 109.46658 * 240.00078 * 2 1 3 20 20 C 1.34424 * 126.82772 * 324.70742 * 19 2 1 21 21 N 1.30836 * 108.07972 * 179.89697 * 20 19 2 22 22 C 1.33240 * 109.82514 * 0.37936 * 21 20 19 23 23 N 1.30709 * 108.95028 * 359.76410 * 22 21 20 24 24 H 1.09000 * 109.46868 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46928 * 299.99745 * 1 2 3 26 26 H 1.09001 * 109.47415 * 60.00000 * 1 2 3 27 27 H 0.96997 * 120.00533 * 359.97438 * 6 4 2 28 28 H 1.08996 * 109.46759 * 300.00105 * 7 6 4 29 29 H 1.08998 * 109.46862 * 60.00154 * 7 6 4 30 30 H 1.09000 * 109.47267 * 300.00305 * 8 7 6 31 31 H 1.09004 * 109.46898 * 59.99839 * 8 7 6 32 32 H 1.08999 * 109.46998 * 95.12555 * 10 9 8 33 33 H 1.08994 * 109.47762 * 215.12684 * 10 9 8 34 34 H 1.09004 * 109.46947 * 335.12643 * 10 9 8 35 35 H 0.97001 * 120.00497 * 180.02562 * 14 13 11 36 36 H 1.08005 * 125.95812 * 0.04225 * 20 19 2 37 37 H 1.07996 * 125.52316 * 179.80123 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.7297 -1.6965 1.1191 6 7 1.7068 -0.2500 2.4545 7 6 2.1957 -0.9403 3.6507 8 6 1.6862 -0.2188 4.8999 9 7 2.1744 -0.9094 6.0961 10 6 3.4547 -0.5227 6.6939 11 6 1.4342 -1.9166 6.6553 12 1 0.7148 -2.4549 6.0559 13 6 1.6083 -2.2458 7.9926 14 7 2.2846 -1.4419 8.7855 15 14 0.8826 -3.8295 8.6668 16 1 1.4556 -4.9875 7.9349 17 1 1.2066 -3.9468 10.1113 18 1 -0.5917 -3.8128 8.4905 19 7 2.0183 -0.6906 -1.1962 20 6 1.4588 -1.7552 -1.7968 21 7 2.1940 -2.0702 -2.8321 22 6 3.2313 -1.2385 -2.9197 23 7 3.1674 -0.3757 -1.9399 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.1495 0.5389 2.5436 28 1 1.8327 -1.9681 3.6508 29 1 3.2856 -0.9399 3.6505 30 1 2.0494 0.8089 4.8996 31 1 0.5961 -0.2188 4.9003 32 1 3.2791 0.1919 7.4980 33 1 3.9502 -1.4067 7.0952 34 1 4.0875 -0.0654 5.9332 35 1 2.4067 -1.6721 9.7199 36 1 0.5580 -2.2606 -1.4812 37 1 3.9998 -1.2715 -3.6777 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690934931.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:09 Heat of formation + Delta-G solvation = 59.499437 kcal Electronic energy + Delta-G solvation = -19944.425170 eV Core-core repulsion = 16759.053988 eV Total energy + Delta-G solvation = -3185.371183 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.11838 -40.89832 -37.91887 -36.06669 -35.83149 -33.33541 -32.37098 -31.21445 -29.57583 -27.93236 -26.32183 -25.06716 -23.19715 -22.83999 -22.42043 -21.24497 -19.01738 -18.61613 -18.14201 -17.11360 -16.77116 -16.59328 -16.20390 -15.91504 -15.51393 -15.29858 -15.11273 -14.86465 -14.36329 -14.24171 -13.65774 -13.37676 -13.29608 -13.06305 -12.78187 -12.69385 -12.53993 -12.47831 -12.21017 -11.97640 -11.82359 -11.53532 -11.07015 -10.80178 -10.69699 -10.54506 -10.19183 -8.85141 -7.85985 -5.36529 0.56586 1.19681 1.40127 1.46014 1.49421 1.55155 1.97625 2.11219 2.51287 3.28382 3.35191 3.45400 3.53610 3.77811 3.83556 3.96425 4.20089 4.25678 4.27895 4.62510 4.65147 4.69550 4.78906 5.03233 5.06004 5.09907 5.23734 5.26736 5.41836 5.45527 5.61062 5.68093 5.78809 6.29696 6.43496 7.06460 7.10031 7.12384 7.82163 8.24870 9.17067 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.034484 B = 0.003480 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.764520 B = 8043.446420 C = 8239.475869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.144 3.856 3 H 0.151 0.849 4 C 0.496 3.504 5 O -0.583 6.583 6 N -0.697 5.697 7 C 0.116 3.884 8 C 0.147 3.853 9 N -0.616 5.616 10 C 0.173 3.827 11 C -0.270 4.270 12 H 0.073 0.927 13 C -0.050 4.050 14 N -0.936 5.936 15 Si 0.967 3.033 16 H -0.284 1.284 17 H -0.294 1.294 18 H -0.270 1.270 19 N -0.368 5.368 20 C 0.268 3.732 21 N -0.575 5.575 22 C 0.193 3.807 23 N -0.350 5.350 24 H 0.077 0.923 25 H 0.118 0.882 26 H 0.099 0.901 27 H 0.421 0.579 28 H 0.041 0.959 29 H 0.038 0.962 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.013 0.987 33 H 0.011 0.989 34 H 0.030 0.970 35 H 0.249 0.751 36 H 0.246 0.754 37 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.338 6.867 -19.376 21.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.037 3.963 3 H 0.168 0.832 4 C 0.281 3.719 5 O -0.463 6.463 6 N -0.350 5.350 7 C -0.011 4.011 8 C 0.020 3.980 9 N -0.340 5.340 10 C 0.028 3.972 11 C -0.400 4.400 12 H 0.091 0.909 13 C -0.245 4.245 14 N -0.582 5.582 15 Si 0.795 3.205 16 H -0.210 1.210 17 H -0.220 1.220 18 H -0.195 1.195 19 N -0.158 5.158 20 C -0.028 4.028 21 N -0.302 5.302 22 C -0.109 4.109 23 N -0.177 5.177 24 H 0.096 0.904 25 H 0.137 0.863 26 H 0.118 0.882 27 H 0.260 0.740 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.031 0.969 33 H 0.030 0.970 34 H 0.048 0.952 35 H 0.058 0.942 36 H 0.262 0.738 37 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -5.371 6.530 -19.279 21.051 hybrid contribution -0.099 -0.808 1.065 1.340 sum -5.470 5.722 -18.214 19.860 Atomic orbital electron populations 1.22288 0.86490 1.05514 1.07146 1.21503 0.98823 0.97710 0.78231 0.83152 1.21285 0.80165 0.84571 0.85861 1.90773 1.39624 1.28637 1.87227 1.45707 1.52866 1.32183 1.04231 1.21915 0.97921 0.96564 0.84739 1.20973 0.98511 0.94454 0.84071 1.44013 1.20203 1.40637 1.29102 1.20592 0.85305 0.97222 0.94079 1.19489 1.18555 1.09443 0.92487 0.90914 1.25780 1.00914 1.01519 0.96302 1.70207 1.46171 1.37131 1.04721 0.85349 0.78698 0.79812 0.76642 1.21008 1.22041 1.19535 1.50245 1.18688 1.24824 1.22041 1.26556 0.99731 0.87383 0.89124 1.70575 1.08089 1.29504 1.22074 1.26588 0.97537 0.89509 0.97275 1.77957 1.03952 1.26757 1.08992 0.90440 0.86336 0.88211 0.74043 0.94027 0.94372 0.91524 0.91501 0.96915 0.96997 0.95183 0.94168 0.73814 0.74062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.07 8.76 71.98 0.63 -0.44 16 2 C 0.14 2.31 3.77 44.25 0.17 2.48 16 3 H 0.15 1.83 8.14 -2.39 -0.02 1.81 16 4 C 0.50 12.57 7.22 87.66 0.63 13.21 16 5 O -0.58 -21.93 16.42 -3.03 -0.05 -21.98 16 6 N -0.70 -15.63 5.45 -463.06 -2.52 -18.15 16 7 C 0.12 3.82 6.00 86.38 0.52 4.34 16 8 C 0.15 5.13 5.76 86.38 0.50 5.63 16 9 N -0.62 -29.61 2.92 -726.96 -2.12 -31.74 16 10 C 0.17 8.41 8.98 127.77 1.15 9.56 16 11 C -0.27 -14.37 9.65 84.03 0.81 -13.56 16 12 H 0.07 3.73 7.86 -2.91 -0.02 3.70 16 13 C -0.05 -2.74 5.10 84.86 0.43 -2.30 16 14 N -0.94 -54.53 10.71 21.65 0.23 -54.30 16 15 Si 0.97 44.39 29.57 68.60 2.03 46.42 16 16 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 17 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 18 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 19 N -0.37 -8.23 3.04 -335.01 -1.02 -9.24 16 20 C 0.27 5.67 11.76 180.36 2.12 7.79 16 21 N -0.57 -14.34 11.19 -204.00 -2.28 -16.62 16 22 C 0.19 4.55 13.03 180.77 2.36 6.91 16 23 N -0.35 -9.24 12.70 -61.25 -0.78 -10.02 16 24 H 0.08 0.55 7.22 -2.39 -0.02 0.54 16 25 H 0.12 0.29 7.57 -2.39 -0.02 0.27 16 26 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 27 H 0.42 5.64 7.89 -92.71 -0.73 4.90 16 28 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.07 2.03 8.07 -2.39 -0.02 2.01 16 31 H 0.07 2.18 8.04 -2.39 -0.02 2.16 16 32 H 0.01 0.66 7.34 -2.39 -0.02 0.64 16 33 H 0.01 0.61 7.34 -2.39 -0.02 0.59 16 34 H 0.03 1.24 8.03 -2.39 -0.02 1.22 16 35 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 36 H 0.25 3.10 7.32 -2.91 -0.02 3.08 16 37 H 0.24 3.73 8.06 -2.91 -0.02 3.70 16 Total: -1.00 -79.91 318.97 3.14 -76.76 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: 0.35 Total: 5.26 kcal Atomic # 6 Polarization: 24.29 SS G_CDS: 9.31 Total: 33.60 kcal Atomic # 7 Polarization: -131.58 SS G_CDS: -8.49 Total: -140.07 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.05 Total: -21.98 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -79.91 3.14 -76.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690934931.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.263 kcal (2) G-P(sol) polarization free energy of solvation -79.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds