Wall clock time and date at job start Mon Mar 30 2020 00:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36930 * 119.99919 * 2 1 4 4 H 1.08006 * 120.00320 * 203.04799 * 3 2 1 5 5 C 1.38816 * 120.00233 * 23.05342 * 3 2 1 6 6 N 1.31618 * 119.99644 * 12.91541 * 5 3 2 7 7 Si 1.86801 * 120.00027 * 192.92527 * 5 3 2 8 8 H 1.48503 * 109.47177 * 59.99697 * 7 5 3 9 9 H 1.48503 * 109.46668 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46862 * 299.99183 * 7 5 3 11 11 C 1.46500 * 119.99993 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.47153 * 89.99497 * 11 2 1 13 13 N 1.46509 * 109.47049 * 179.97438 * 12 11 2 14 14 C 1.46499 * 119.99960 * 270.00384 * 13 12 11 15 15 C 1.34778 * 119.99817 * 90.00385 * 13 12 11 16 16 O 1.21284 * 119.99918 * 359.97438 * 15 13 12 17 17 C 1.50694 * 120.00029 * 179.97438 * 15 13 12 18 18 C 1.50703 * 109.47194 * 179.97438 * 17 15 13 19 19 N 1.33248 * 125.52002 * 90.00084 * 18 17 15 20 20 C 1.30833 * 109.82562 * 179.97438 * 19 18 17 21 21 N 1.34429 * 108.07539 * 0.02562 * 20 19 18 22 22 H 0.97003 * 126.82259 * 179.73410 * 21 20 19 23 23 N 1.30705 * 125.53178 * 270.00358 * 18 17 15 24 24 H 1.08991 * 109.46688 * 275.11971 * 1 2 3 25 25 H 1.09002 * 109.46805 * 35.11923 * 1 2 3 26 26 H 1.08997 * 109.46906 * 155.11725 * 1 2 3 27 27 H 0.97002 * 119.99657 * 179.97438 * 6 5 3 28 28 H 1.09000 * 109.47123 * 329.99699 * 11 2 1 29 29 H 1.08999 * 109.47286 * 210.00209 * 11 2 1 30 30 H 1.09000 * 109.46971 * 60.00647 * 12 11 2 31 31 H 1.08991 * 109.47770 * 300.00205 * 12 11 2 32 32 H 1.08994 * 109.47124 * 269.99677 * 14 13 12 33 33 H 1.08992 * 109.47417 * 30.00053 * 14 13 12 34 34 H 1.08996 * 109.46847 * 149.99771 * 14 13 12 35 35 H 1.09005 * 109.47143 * 59.99965 * 17 15 13 36 36 H 1.08994 * 109.47248 * 299.99974 * 17 15 13 37 37 H 1.07997 * 125.95891 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1651 1.2233 -0.3662 5 6 1.5388 2.3401 0.4708 6 7 0.4118 2.2596 1.1459 7 14 2.3160 4.0073 0.1458 8 1 2.4197 4.2281 -1.3191 9 1 1.4738 5.0718 0.7481 10 1 3.6721 4.0474 0.7497 11 6 2.1976 -1.2687 -0.0006 12 6 2.4525 -1.7098 -1.4433 13 7 3.1855 -2.9783 -1.4438 14 6 4.6505 -2.9777 -1.4440 15 6 2.5121 -4.1458 -1.4441 16 8 1.2993 -4.1462 -1.4435 17 6 3.2661 -5.4506 -1.4452 18 6 2.2872 -6.5964 -1.4447 19 7 1.7834 -7.1847 -2.5290 20 6 0.9660 -8.1428 -2.1747 21 7 0.9308 -8.1856 -0.8315 22 1 0.4092 -8.7919 -0.2827 23 7 1.7948 -7.1743 -0.3808 24 1 -0.3632 0.0917 1.0235 25 1 -0.3633 0.8406 -0.5912 26 1 -0.3633 -0.9323 -0.4324 27 1 -0.0149 3.0661 1.4752 28 1 1.6085 -2.0286 0.5130 29 1 3.1500 -1.1387 0.5133 30 1 3.0416 -0.9500 -1.9568 31 1 1.5002 -1.8399 -1.9571 32 1 5.0137 -2.9772 -2.4717 33 1 5.0136 -2.0878 -0.9299 34 1 5.0142 -3.8677 -0.9305 35 1 3.8933 -5.5086 -0.5556 36 1 3.8923 -5.5076 -2.3355 37 1 0.4151 -8.7864 -2.8444 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699001314.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:27 Heat of formation + Delta-G solvation = 83.771734 kcal Electronic energy + Delta-G solvation = -20093.649412 eV Core-core repulsion = 16909.330754 eV Total energy + Delta-G solvation = -3184.318657 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 3.82 seconds Orbital eigenvalues (eV) -42.22719 -39.54436 -36.04623 -34.81881 -33.43688 -31.88849 -31.40954 -29.61199 -28.01896 -26.33720 -25.69153 -23.59218 -22.88332 -21.06587 -20.29180 -18.90899 -18.38185 -17.06334 -16.56232 -15.92799 -15.79394 -15.26141 -14.88357 -14.67173 -13.73479 -13.53660 -13.29233 -13.17127 -12.88791 -12.51530 -12.27317 -12.20092 -12.05340 -11.92573 -11.21095 -10.80979 -10.78055 -10.47499 -10.30277 -10.18479 -10.14849 -9.94135 -9.85163 -9.75347 -9.45382 -8.63247 -8.31984 -6.65990 -5.66077 -3.14019 1.47759 2.50071 2.67913 2.85773 3.34940 3.41698 3.46960 3.47965 3.94652 4.47791 4.54909 4.70131 4.77659 5.15056 5.27344 5.35664 5.46098 5.52399 5.71832 5.80252 5.81393 6.05532 6.22923 6.23682 6.37565 6.62371 6.73419 6.86405 6.94631 7.04677 7.47369 7.64938 7.80565 7.86340 7.93439 8.40770 8.47014 9.29219 9.92998 10.43506 11.38315 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.038314 B = 0.003736 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.635244 B = 7492.045412 C = 7960.236973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.600 5.600 3 C -0.258 4.258 4 H 0.067 0.933 5 C 0.002 3.998 6 N -0.906 5.906 7 Si 0.905 3.095 8 H -0.284 1.284 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.143 3.857 12 C 0.094 3.906 13 N -0.611 5.611 14 C 0.075 3.925 15 C 0.517 3.483 16 O -0.529 6.529 17 C -0.048 4.048 18 C 0.251 3.749 19 N -0.535 5.535 20 C 0.261 3.739 21 N -0.485 5.485 22 H 0.441 0.559 23 N -0.303 5.303 24 H 0.030 0.970 25 H 0.040 0.960 26 H 0.001 0.999 27 H 0.253 0.747 28 H 0.038 0.962 29 H 0.045 0.955 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.116 0.884 36 H 0.119 0.881 37 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.293 -20.545 -6.200 22.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.323 5.323 3 C -0.388 4.388 4 H 0.085 0.915 5 C -0.196 4.196 6 N -0.551 5.551 7 Si 0.735 3.265 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.210 1.210 11 C 0.014 3.986 12 C -0.030 4.030 13 N -0.345 5.345 14 C -0.068 4.068 15 C 0.302 3.698 16 O -0.405 6.405 17 C -0.091 4.091 18 C -0.032 4.032 19 N -0.263 5.263 20 C -0.039 4.039 21 N -0.203 5.203 22 H 0.286 0.714 23 N -0.132 5.132 24 H 0.048 0.952 25 H 0.058 0.942 26 H 0.019 0.981 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.134 0.866 36 H 0.137 0.863 37 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 5.806 -20.036 -5.744 21.637 hybrid contribution -0.125 0.415 0.056 0.437 sum 5.681 -19.621 -5.688 21.204 Atomic orbital electron populations 1.20797 0.82439 0.95555 0.99431 1.43833 1.01962 1.00419 1.86076 1.19141 0.98254 0.85656 1.35730 0.91493 1.25041 0.97890 0.98525 0.98180 1.70079 1.19396 1.27253 1.38392 0.86331 0.78394 0.83850 0.77906 1.21079 1.21662 1.20952 1.20979 0.96168 0.88639 0.92764 1.22521 0.96741 0.81935 1.01821 1.47922 1.06892 1.06505 1.73153 1.21835 0.79866 1.03407 1.01696 1.20087 0.87989 0.84682 0.77013 1.90737 1.13802 1.87060 1.48933 1.19967 0.95380 0.87590 1.06152 1.23360 0.97358 0.96734 0.85762 1.70351 1.14501 1.10174 1.31286 1.26044 0.96648 0.96682 0.84496 1.48073 1.36465 1.28642 1.07089 0.71372 1.77995 1.09462 1.03427 1.22310 0.95150 0.94157 0.98060 0.93719 0.94406 0.93641 0.90704 0.90604 0.92587 0.90394 0.91360 0.86606 0.86260 0.76170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.34 8.98 59.85 0.54 4.88 16 2 N -0.60 -15.93 2.92 -181.12 -0.53 -16.46 16 3 C -0.26 -7.24 9.65 -15.06 -0.15 -7.39 16 4 H 0.07 1.79 7.86 -52.48 -0.41 1.38 16 5 C 0.00 0.06 5.10 -17.43 -0.09 -0.03 16 6 N -0.91 -27.28 10.71 55.49 0.59 -26.69 16 7 Si 0.91 22.08 29.57 -169.99 -5.03 17.06 16 8 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 9 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 C 0.14 3.17 5.97 -4.04 -0.02 3.15 16 12 C 0.09 1.79 5.73 -4.04 -0.02 1.76 16 13 N -0.61 -9.32 2.87 -181.58 -0.52 -9.84 16 14 C 0.08 0.77 10.24 59.85 0.61 1.39 16 15 C 0.52 8.45 7.67 -10.99 -0.08 8.37 16 16 O -0.53 -11.20 15.61 5.55 0.09 -11.11 16 17 C -0.05 -0.58 4.88 -29.04 -0.14 -0.73 16 18 C 0.25 3.55 6.63 -156.85 -1.04 2.51 16 19 N -0.54 -7.15 11.19 -11.98 -0.13 -7.28 16 20 C 0.26 2.37 13.13 -90.65 -1.19 1.18 16 21 N -0.48 -4.60 7.45 29.53 0.22 -4.38 16 22 H 0.44 2.37 8.96 -182.34 -1.63 0.74 16 23 N -0.30 -4.24 12.80 32.42 0.41 -3.82 16 24 H 0.03 0.87 7.34 -51.93 -0.38 0.49 16 25 H 0.04 1.12 7.34 -51.93 -0.38 0.74 16 26 H 0.00 0.02 8.03 -51.93 -0.42 -0.40 16 27 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 28 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 29 H 0.05 0.97 8.04 -51.93 -0.42 0.56 16 30 H 0.07 1.38 8.07 -51.93 -0.42 0.96 16 31 H 0.08 1.62 7.42 -51.93 -0.39 1.23 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.82 8.07 -51.93 -0.42 0.40 16 34 H 0.07 0.51 6.44 -51.93 -0.33 0.18 16 35 H 0.12 1.10 7.40 -51.93 -0.38 0.72 16 36 H 0.12 1.11 8.11 -51.93 -0.42 0.69 16 37 H 0.22 0.77 8.06 -52.49 -0.42 0.35 16 LS Contribution 318.10 15.07 4.79 4.79 Total: -1.00 -38.52 318.10 -8.10 -46.62 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: -6.41 Total: -3.97 kcal Atomic # 6 Polarization: 16.68 SS G_CDS: -1.59 Total: 15.09 kcal Atomic # 7 Polarization: -68.52 SS G_CDS: 0.04 Total: -68.48 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.09 Total: -11.11 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.06 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -38.52 -8.10 -46.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699001314.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.391 kcal (2) G-P(sol) polarization free energy of solvation -38.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.82 seconds