Wall clock time and date at job start Mon Mar 30 2020 00:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36930 * 119.99919 * 2 1 4 4 H 1.08006 * 120.00320 * 203.04799 * 3 2 1 5 5 C 1.38816 * 120.00233 * 23.05342 * 3 2 1 6 6 N 1.31618 * 119.99644 * 12.91541 * 5 3 2 7 7 Si 1.86801 * 120.00027 * 192.92527 * 5 3 2 8 8 H 1.48503 * 109.47177 * 59.99697 * 7 5 3 9 9 H 1.48503 * 109.46668 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46862 * 299.99183 * 7 5 3 11 11 C 1.46500 * 119.99993 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.47153 * 89.99497 * 11 2 1 13 13 N 1.46509 * 109.47049 * 179.97438 * 12 11 2 14 14 C 1.46499 * 119.99960 * 270.00384 * 13 12 11 15 15 C 1.34778 * 119.99817 * 90.00385 * 13 12 11 16 16 O 1.21284 * 119.99918 * 359.97438 * 15 13 12 17 17 C 1.50694 * 120.00029 * 179.97438 * 15 13 12 18 18 C 1.50703 * 109.47194 * 179.97438 * 17 15 13 19 19 N 1.33248 * 125.52002 * 90.00084 * 18 17 15 20 20 C 1.30833 * 109.82562 * 179.97438 * 19 18 17 21 21 N 1.34429 * 108.07539 * 0.02562 * 20 19 18 22 22 H 0.97003 * 126.82259 * 179.73410 * 21 20 19 23 23 N 1.30705 * 125.53178 * 270.00358 * 18 17 15 24 24 H 1.08991 * 109.46688 * 275.11971 * 1 2 3 25 25 H 1.09002 * 109.46805 * 35.11923 * 1 2 3 26 26 H 1.08997 * 109.46906 * 155.11725 * 1 2 3 27 27 H 0.97002 * 119.99657 * 179.97438 * 6 5 3 28 28 H 1.09000 * 109.47123 * 329.99699 * 11 2 1 29 29 H 1.08999 * 109.47286 * 210.00209 * 11 2 1 30 30 H 1.09000 * 109.46971 * 60.00647 * 12 11 2 31 31 H 1.08991 * 109.47770 * 300.00205 * 12 11 2 32 32 H 1.08994 * 109.47124 * 269.99677 * 14 13 12 33 33 H 1.08992 * 109.47417 * 30.00053 * 14 13 12 34 34 H 1.08996 * 109.46847 * 149.99771 * 14 13 12 35 35 H 1.09005 * 109.47143 * 59.99965 * 17 15 13 36 36 H 1.08994 * 109.47248 * 299.99974 * 17 15 13 37 37 H 1.07997 * 125.95891 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1651 1.2233 -0.3662 5 6 1.5388 2.3401 0.4708 6 7 0.4118 2.2596 1.1459 7 14 2.3160 4.0073 0.1458 8 1 2.4197 4.2281 -1.3191 9 1 1.4738 5.0718 0.7481 10 1 3.6721 4.0474 0.7497 11 6 2.1976 -1.2687 -0.0006 12 6 2.4525 -1.7098 -1.4433 13 7 3.1855 -2.9783 -1.4438 14 6 4.6505 -2.9777 -1.4440 15 6 2.5121 -4.1458 -1.4441 16 8 1.2993 -4.1462 -1.4435 17 6 3.2661 -5.4506 -1.4452 18 6 2.2872 -6.5964 -1.4447 19 7 1.7834 -7.1847 -2.5290 20 6 0.9660 -8.1428 -2.1747 21 7 0.9308 -8.1856 -0.8315 22 1 0.4092 -8.7919 -0.2827 23 7 1.7948 -7.1743 -0.3808 24 1 -0.3632 0.0917 1.0235 25 1 -0.3633 0.8406 -0.5912 26 1 -0.3633 -0.9323 -0.4324 27 1 -0.0149 3.0661 1.4752 28 1 1.6085 -2.0286 0.5130 29 1 3.1500 -1.1387 0.5133 30 1 3.0416 -0.9500 -1.9568 31 1 1.5002 -1.8399 -1.9571 32 1 5.0137 -2.9772 -2.4717 33 1 5.0136 -2.0878 -0.9299 34 1 5.0142 -3.8677 -0.9305 35 1 3.8933 -5.5086 -0.5556 36 1 3.8923 -5.5076 -2.3355 37 1 0.4151 -8.7864 -2.8444 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699001314.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:26 Heat of formation + Delta-G solvation = 56.112287 kcal Electronic energy + Delta-G solvation = -20094.848815 eV Core-core repulsion = 16909.330754 eV Total energy + Delta-G solvation = -3185.518061 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.05974 -40.82192 -37.83966 -36.37195 -34.38208 -33.45959 -32.67544 -30.94824 -29.34152 -28.00053 -27.35005 -25.25922 -23.72933 -22.64149 -21.66672 -20.02978 -19.20528 -18.78157 -18.11897 -17.33877 -16.88851 -16.56795 -16.16932 -15.82744 -15.53227 -15.23236 -14.65931 -14.44238 -14.15738 -13.90600 -13.86026 -13.25557 -13.10416 -13.05718 -12.94718 -12.74908 -12.67608 -12.47765 -12.17017 -11.92390 -11.63565 -11.22911 -11.07515 -10.94476 -10.69439 -10.56464 -9.74921 -8.76827 -7.82367 -5.34554 0.66329 1.48145 1.52255 1.58470 1.63209 1.70597 1.86966 2.24574 2.54013 3.17914 3.31382 3.60873 3.70688 3.79196 4.13282 4.21269 4.34427 4.45188 4.49741 4.56251 4.66341 4.76427 4.84839 4.92282 5.03464 5.11704 5.25524 5.27846 5.35543 5.56400 5.59733 5.64819 6.28038 6.30532 6.45858 7.10986 7.11245 7.19602 7.81624 8.30130 9.21611 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.038314 B = 0.003736 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.635244 B = 7492.045412 C = 7960.236973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.617 5.617 3 C -0.268 4.268 4 H 0.082 0.918 5 C -0.057 4.057 6 N -0.944 5.944 7 Si 0.977 3.023 8 H -0.276 1.276 9 H -0.297 1.297 10 H -0.270 1.270 11 C 0.149 3.851 12 C 0.113 3.887 13 N -0.609 5.609 14 C 0.067 3.933 15 C 0.511 3.489 16 O -0.588 6.588 17 C -0.039 4.039 18 C 0.232 3.768 19 N -0.575 5.575 20 C 0.274 3.726 21 N -0.476 5.476 22 H 0.457 0.543 23 N -0.343 5.343 24 H 0.004 0.996 25 H 0.020 0.980 26 H 0.014 0.986 27 H 0.248 0.752 28 H 0.020 0.980 29 H 0.055 0.945 30 H 0.084 0.916 31 H 0.046 0.954 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.143 0.857 36 H 0.150 0.850 37 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.481 -21.676 -7.264 24.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.341 5.341 3 C -0.397 4.397 4 H 0.099 0.901 5 C -0.252 4.252 6 N -0.590 5.590 7 Si 0.805 3.195 8 H -0.202 1.202 9 H -0.224 1.224 10 H -0.195 1.195 11 C 0.022 3.978 12 C -0.012 4.012 13 N -0.342 5.342 14 C -0.075 4.075 15 C 0.299 3.701 16 O -0.468 6.468 17 C -0.081 4.081 18 C -0.051 4.051 19 N -0.304 5.304 20 C -0.024 4.024 21 N -0.196 5.196 22 H 0.306 0.694 23 N -0.173 5.173 24 H 0.022 0.978 25 H 0.039 0.961 26 H 0.033 0.967 27 H 0.057 0.943 28 H 0.039 0.961 29 H 0.074 0.926 30 H 0.102 0.898 31 H 0.065 0.935 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.120 0.880 35 H 0.160 0.840 36 H 0.167 0.833 37 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 8.059 -21.225 -6.809 23.702 hybrid contribution -0.832 0.627 0.387 1.112 sum 7.227 -20.597 -6.422 22.753 Atomic orbital electron populations 1.20475 0.83273 0.95234 0.97471 1.44074 1.01887 1.01756 1.86397 1.19590 0.98856 0.86263 1.35022 0.90053 1.25945 0.98594 1.02404 0.98213 1.70268 1.21088 1.27845 1.39819 0.85194 0.77728 0.78678 0.77936 1.20183 1.22378 1.19494 1.21037 0.95591 0.86425 0.94793 1.21919 0.96325 0.84123 0.98843 1.47965 1.08926 1.04850 1.72428 1.22201 0.76328 1.05079 1.03842 1.20884 0.87573 0.86113 0.75508 1.90706 1.16534 1.87963 1.51572 1.20042 0.94942 0.84321 1.08799 1.23713 0.97983 0.97364 0.86070 1.70337 1.16290 1.11909 1.31842 1.27028 0.95065 0.95626 0.84712 1.48014 1.35852 1.28001 1.07731 0.69427 1.77871 1.10964 1.05037 1.23448 0.97764 0.96132 0.96747 0.94262 0.96144 0.92638 0.89770 0.93521 0.90170 0.90463 0.88045 0.83951 0.83254 0.71105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 10.02 8.98 127.77 1.15 11.16 16 2 N -0.62 -33.23 2.92 -726.93 -2.12 -35.36 16 3 C -0.27 -14.95 9.65 84.04 0.81 -14.14 16 4 H 0.08 4.22 7.86 -2.91 -0.02 4.20 16 5 C -0.06 -3.25 5.10 84.86 0.43 -2.82 16 6 N -0.94 -58.05 10.71 21.65 0.23 -57.82 16 7 Si 0.98 45.30 29.57 68.60 2.03 47.33 16 8 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 9 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 10 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 11 C 0.15 6.62 5.97 86.38 0.52 7.13 16 12 C 0.11 4.28 5.73 86.38 0.49 4.77 16 13 N -0.61 -17.67 2.87 -846.78 -2.43 -20.10 16 14 C 0.07 1.14 10.24 127.77 1.31 2.45 16 15 C 0.51 16.31 7.67 87.66 0.67 16.98 16 16 O -0.59 -25.38 15.61 -3.04 -0.05 -25.43 16 17 C -0.04 -0.87 4.88 29.10 0.14 -0.72 16 18 C 0.23 6.30 6.63 138.63 0.92 7.21 16 19 N -0.57 -14.53 11.19 -191.80 -2.15 -16.67 16 20 C 0.27 4.39 13.13 180.36 2.37 6.75 16 21 N -0.48 -8.34 7.45 -60.49 -0.45 -8.79 16 22 H 0.46 4.20 8.96 -213.10 -1.91 2.29 16 23 N -0.34 -9.34 12.80 -51.33 -0.66 -9.99 16 24 H 0.00 0.25 7.34 -2.39 -0.02 0.23 16 25 H 0.02 1.17 7.34 -2.39 -0.02 1.16 16 26 H 0.01 0.72 8.03 -2.39 -0.02 0.71 16 27 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 28 H 0.02 0.96 8.07 -2.39 -0.02 0.94 16 29 H 0.06 2.33 8.04 -2.39 -0.02 2.31 16 30 H 0.08 3.01 8.07 -2.39 -0.02 2.99 16 31 H 0.05 2.04 7.42 -2.39 -0.02 2.02 16 32 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.08 1.38 8.07 -2.39 -0.02 1.36 16 34 H 0.10 1.09 6.44 -2.39 -0.02 1.08 16 35 H 0.14 2.29 7.40 -2.38 -0.02 2.27 16 36 H 0.15 2.31 8.11 -2.39 -0.02 2.29 16 37 H 0.27 0.89 8.06 -2.91 -0.02 0.87 16 Total: -1.00 -86.70 318.10 2.39 -84.31 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -0.83 Total: 3.74 kcal Atomic # 6 Polarization: 29.97 SS G_CDS: 8.81 Total: 38.79 kcal Atomic # 7 Polarization: -141.15 SS G_CDS: -7.58 Total: -148.73 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.05 Total: -25.43 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -86.70 2.39 -84.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699001314.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.425 kcal (2) G-P(sol) polarization free energy of solvation -86.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds