Wall clock time and date at job start Mon Mar 30 2020 00:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 C 1.53001 * 109.46508 * 119.99286 * 2 1 3 5 5 N 1.46507 * 109.46637 * 174.99939 * 4 2 1 6 6 C 1.36938 * 119.99616 * 180.02562 * 5 4 2 7 7 H 1.07998 * 120.00430 * 359.97438 * 6 5 4 8 8 C 1.38812 * 119.99364 * 180.02562 * 6 5 4 9 9 N 1.31618 * 120.00771 * 0.02562 * 8 6 5 10 10 Si 1.86808 * 119.99685 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47424 * 59.99814 * 10 8 6 12 12 H 1.48499 * 109.47202 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.46800 * 299.99782 * 10 8 6 14 14 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 15 15 C 1.34777 * 119.99525 * 84.99977 * 14 2 1 16 16 O 1.21283 * 120.00463 * 0.02562 * 15 14 2 17 17 C 1.50700 * 119.99675 * 179.72583 * 15 14 2 18 18 C 1.53004 * 109.47208 * 180.27843 * 17 15 14 19 19 C 1.50700 * 109.47208 * 180.02562 * 18 17 15 20 20 N 1.33243 * 125.52491 * 269.68978 * 19 18 17 21 21 C 1.30834 * 109.82886 * 179.85402 * 20 19 18 22 22 N 1.34434 * 108.07427 * 0.40581 * 21 20 19 23 23 H 0.96997 * 126.82101 * 179.78681 * 22 21 20 24 24 N 1.30714 * 125.52758 * 89.99825 * 19 18 17 25 25 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 27 27 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 28 28 H 1.08995 * 109.47553 * 294.99926 * 4 2 1 29 29 H 1.08998 * 109.47075 * 55.00372 * 4 2 1 30 30 H 0.97000 * 120.00165 * 0.02562 * 5 4 2 31 31 H 0.97000 * 120.00697 * 180.02562 * 9 8 6 32 32 H 0.97000 * 120.00580 * 265.00723 * 14 2 1 33 33 H 1.09009 * 109.47352 * 300.27556 * 17 15 14 34 34 H 1.08998 * 109.47585 * 60.27844 * 17 15 14 35 35 H 1.09000 * 109.46887 * 300.00372 * 18 17 15 36 36 H 1.08998 * 109.46846 * 59.99549 * 18 17 15 37 37 H 1.07998 * 125.95872 * 180.12195 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 7 3.5000 -0.8263 1.1907 6 6 4.1837 -1.4387 2.2070 7 1 3.6466 -1.8437 3.0519 8 6 5.5671 -1.5378 2.1517 9 7 6.2219 -1.0429 1.1228 10 14 6.4998 -2.3738 3.5377 11 1 6.0439 -3.7816 3.6626 12 1 7.9547 -2.3486 3.2411 13 1 6.2422 -1.6552 4.8115 14 7 2.0185 -0.6908 -1.1960 15 6 2.1472 -0.0185 -2.3570 16 8 1.8591 1.1584 -2.4116 17 6 2.6554 -0.7275 -3.5859 18 6 2.7122 0.2568 -4.7558 19 6 3.2198 -0.4523 -5.9848 20 7 4.4975 -0.5502 -6.3499 21 6 4.5902 -1.2326 -7.4624 22 7 3.3489 -1.5830 -7.8414 23 1 3.1037 -2.0920 -8.6298 24 7 2.4777 -1.0663 -6.8685 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5140 0.8898 27 1 -0.3633 0.5137 -0.8900 28 1 1.7516 -0.1581 2.1370 29 1 1.6053 -1.7197 1.2953 30 1 3.9825 -0.4622 0.4321 31 1 7.1886 -1.1125 1.0839 32 1 2.2491 -1.6319 -1.1524 33 1 3.6539 -1.1197 -3.3923 34 1 1.9842 -1.5494 -3.8349 35 1 1.7138 0.6491 -4.9494 36 1 3.3834 1.0788 -4.5068 37 1 5.5040 -1.4688 -7.9872 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699399398.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:16 Heat of formation + Delta-G solvation = 49.480130 kcal Electronic energy + Delta-G solvation = -19674.391725 eV Core-core repulsion = 16488.586072 eV Total energy + Delta-G solvation = -3185.805653 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.25650 -39.47234 -36.22774 -34.22971 -33.57416 -32.16478 -31.41602 -30.55160 -29.71046 -25.75084 -25.22144 -22.92826 -22.59432 -20.94559 -20.16394 -19.86353 -18.51670 -17.24703 -16.71341 -15.89073 -15.66951 -15.40788 -14.96553 -14.64128 -13.93910 -13.70068 -13.35635 -13.07827 -12.92805 -12.30794 -12.26884 -12.16994 -12.13729 -11.98419 -11.53284 -11.07584 -10.87315 -10.79633 -10.43176 -10.27428 -10.17290 -10.05159 -9.88564 -9.71641 -9.43444 -8.89030 -8.61401 -6.93693 -5.75448 -3.05482 1.41485 2.46521 2.71978 3.02404 3.44386 3.48967 3.50184 3.57117 4.04056 4.52874 4.59356 4.78313 5.00958 5.22880 5.25413 5.38193 5.55031 5.56867 5.66571 5.72352 5.97014 6.01214 6.06310 6.08773 6.14772 6.23453 6.31460 6.44338 6.53029 6.75039 6.81003 7.01933 7.69441 7.92323 7.94762 8.42331 8.62531 9.53976 10.10347 10.45917 11.46718 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.017068 B = 0.004173 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.108587 B = 6707.874395 C = 8040.367459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.133 3.867 3 H 0.087 0.913 4 C 0.144 3.856 5 N -0.732 5.732 6 C -0.245 4.245 7 H 0.070 0.930 8 C -0.011 4.011 9 N -0.930 5.930 10 Si 0.907 3.093 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 N -0.711 5.711 15 C 0.519 3.481 16 O -0.551 6.551 17 C -0.134 4.134 18 C -0.010 4.010 19 C 0.236 3.764 20 N -0.536 5.536 21 C 0.260 3.740 22 N -0.489 5.489 23 H 0.440 0.560 24 N -0.316 5.316 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.033 0.967 29 H 0.024 0.976 30 H 0.386 0.614 31 H 0.256 0.744 32 H 0.404 0.596 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.784 -2.428 -16.881 18.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.028 3.972 3 H 0.105 0.895 4 C 0.016 3.984 5 N -0.377 5.377 6 C -0.376 4.376 7 H 0.088 0.912 8 C -0.207 4.207 9 N -0.578 5.578 10 Si 0.738 3.262 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.213 1.213 14 N -0.361 5.361 15 C 0.305 3.695 16 O -0.429 6.429 17 C -0.175 4.175 18 C -0.050 4.050 19 C -0.047 4.047 20 N -0.264 5.264 21 C -0.039 4.039 22 N -0.207 5.207 23 H 0.285 0.715 24 N -0.146 5.146 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.050 0.950 29 H 0.041 0.959 30 H 0.221 0.779 31 H 0.066 0.934 32 H 0.239 0.761 33 H 0.121 0.879 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.120 0.880 37 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -8.430 -1.532 -16.485 18.579 hybrid contribution 1.049 -1.369 -0.185 1.735 sum -7.381 -2.901 -16.670 18.461 Atomic orbital electron populations 1.22097 0.95612 1.01767 1.02093 1.21233 0.93261 0.98052 0.84676 0.89513 1.20980 0.86860 0.96910 0.93635 1.42354 0.99739 1.70270 1.25296 1.19174 0.89445 1.29701 0.99282 0.91231 1.24747 0.96422 1.01506 0.98043 1.69654 1.07333 1.50585 1.30247 0.86274 0.79005 0.79228 0.81671 1.21303 1.21685 1.21276 1.45981 1.66447 1.14443 1.09264 1.20377 0.77302 0.87189 0.84603 1.90671 1.50981 1.15925 1.85316 1.21559 1.04173 0.99190 0.92598 1.19667 1.02928 0.96565 0.85875 1.24386 0.87069 0.96398 0.96823 1.70502 1.20870 1.21718 1.13292 1.26165 0.90782 0.93825 0.93171 1.48153 1.05585 1.44299 1.22707 0.71488 1.78023 1.16206 1.18721 1.01614 0.92666 0.91755 0.92426 0.94966 0.95872 0.77937 0.93395 0.76122 0.87910 0.89012 0.88809 0.87982 0.76135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 9.48 37.16 0.35 -1.84 16 2 C 0.13 2.26 2.73 -67.93 -0.19 2.08 16 3 H 0.09 1.68 7.58 -51.93 -0.39 1.28 16 4 C 0.14 2.84 5.82 -4.04 -0.02 2.81 16 5 N -0.73 -18.30 5.43 -59.91 -0.33 -18.62 16 6 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 7 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 8 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 9 N -0.93 -28.11 13.06 55.49 0.72 -27.39 16 10 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 N -0.71 -11.51 4.52 -53.80 -0.24 -11.75 16 15 C 0.52 8.48 7.79 -10.98 -0.09 8.39 16 16 O -0.55 -10.56 15.64 5.55 0.09 -10.48 16 17 C -0.13 -1.79 5.68 -27.88 -0.16 -1.95 16 18 C -0.01 -0.13 5.13 -27.88 -0.14 -0.28 16 19 C 0.24 3.15 7.39 -156.85 -1.16 1.99 16 20 N -0.54 -6.96 11.19 -11.97 -0.13 -7.10 16 21 C 0.26 2.17 13.13 -90.65 -1.19 0.98 16 22 N -0.49 -4.00 7.45 29.53 0.22 -3.78 16 23 H 0.44 1.79 8.96 -182.34 -1.63 0.16 16 24 N -0.32 -3.92 12.80 32.42 0.41 -3.50 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.39 10.32 7.33 -40.82 -0.30 10.02 16 31 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 32 H 0.40 6.21 8.60 -40.82 -0.35 5.85 16 33 H 0.10 1.43 8.14 -51.92 -0.42 1.01 16 34 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.09 1.22 8.10 -51.93 -0.42 0.80 16 36 H 0.10 1.47 8.10 -51.93 -0.42 1.04 16 37 H 0.22 0.69 8.06 -52.49 -0.42 0.27 16 LS Contribution 323.48 15.07 4.87 4.87 Total: -1.00 -35.76 323.48 -8.69 -44.45 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -6.45 Total: 11.17 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: -2.84 Total: 4.84 kcal Atomic # 7 Polarization: -72.80 SS G_CDS: 0.66 Total: -72.14 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.48 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -35.76 -8.69 -44.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699399398.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.930 kcal (2) G-P(sol) polarization free energy of solvation -35.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds