Wall clock time and date at job start Mon Mar 30 2020 00:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 C 1.53001 * 109.46508 * 119.99286 * 2 1 3 5 5 N 1.46507 * 109.46637 * 174.99939 * 4 2 1 6 6 C 1.36938 * 119.99616 * 180.02562 * 5 4 2 7 7 H 1.07998 * 120.00430 * 359.97438 * 6 5 4 8 8 C 1.38812 * 119.99364 * 180.02562 * 6 5 4 9 9 N 1.31618 * 120.00771 * 0.02562 * 8 6 5 10 10 Si 1.86808 * 119.99685 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47424 * 59.99814 * 10 8 6 12 12 H 1.48499 * 109.47202 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.46800 * 299.99782 * 10 8 6 14 14 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 15 15 C 1.34777 * 119.99525 * 84.99977 * 14 2 1 16 16 O 1.21283 * 120.00463 * 0.02562 * 15 14 2 17 17 C 1.50700 * 119.99675 * 179.72583 * 15 14 2 18 18 C 1.53004 * 109.47208 * 180.27843 * 17 15 14 19 19 C 1.50700 * 109.47208 * 180.02562 * 18 17 15 20 20 N 1.33243 * 125.52491 * 269.68978 * 19 18 17 21 21 C 1.30834 * 109.82886 * 179.85402 * 20 19 18 22 22 N 1.34434 * 108.07427 * 0.40581 * 21 20 19 23 23 H 0.96997 * 126.82101 * 179.78681 * 22 21 20 24 24 N 1.30714 * 125.52758 * 89.99825 * 19 18 17 25 25 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 27 27 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 28 28 H 1.08995 * 109.47553 * 294.99926 * 4 2 1 29 29 H 1.08998 * 109.47075 * 55.00372 * 4 2 1 30 30 H 0.97000 * 120.00165 * 0.02562 * 5 4 2 31 31 H 0.97000 * 120.00697 * 180.02562 * 9 8 6 32 32 H 0.97000 * 120.00580 * 265.00723 * 14 2 1 33 33 H 1.09009 * 109.47352 * 300.27556 * 17 15 14 34 34 H 1.08998 * 109.47585 * 60.27844 * 17 15 14 35 35 H 1.09000 * 109.46887 * 300.00372 * 18 17 15 36 36 H 1.08998 * 109.46846 * 59.99549 * 18 17 15 37 37 H 1.07998 * 125.95872 * 180.12195 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 7 3.5000 -0.8263 1.1907 6 6 4.1837 -1.4387 2.2070 7 1 3.6466 -1.8437 3.0519 8 6 5.5671 -1.5378 2.1517 9 7 6.2219 -1.0429 1.1228 10 14 6.4998 -2.3738 3.5377 11 1 6.0439 -3.7816 3.6626 12 1 7.9547 -2.3486 3.2411 13 1 6.2422 -1.6552 4.8115 14 7 2.0185 -0.6908 -1.1960 15 6 2.1472 -0.0185 -2.3570 16 8 1.8591 1.1584 -2.4116 17 6 2.6554 -0.7275 -3.5859 18 6 2.7122 0.2568 -4.7558 19 6 3.2198 -0.4523 -5.9848 20 7 4.4975 -0.5502 -6.3499 21 6 4.5902 -1.2326 -7.4624 22 7 3.3489 -1.5830 -7.8414 23 1 3.1037 -2.0920 -8.6298 24 7 2.4777 -1.0663 -6.8685 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5140 0.8898 27 1 -0.3633 0.5137 -0.8900 28 1 1.7516 -0.1581 2.1370 29 1 1.6053 -1.7197 1.2953 30 1 3.9825 -0.4622 0.4321 31 1 7.1886 -1.1125 1.0839 32 1 2.2491 -1.6319 -1.1524 33 1 3.6539 -1.1197 -3.3923 34 1 1.9842 -1.5494 -3.8349 35 1 1.7138 0.6491 -4.9494 36 1 3.3834 1.0788 -4.5068 37 1 5.5040 -1.4688 -7.9872 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699399398.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:16 Heat of formation + Delta-G solvation = 23.246286 kcal Electronic energy + Delta-G solvation = -19675.529310 eV Core-core repulsion = 16488.586072 eV Total energy + Delta-G solvation = -3186.943237 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.06175 -40.82507 -37.75783 -35.47558 -35.18973 -33.19742 -32.86272 -31.87369 -31.01538 -27.40980 -26.42183 -24.47262 -23.64881 -22.28792 -21.37395 -20.99666 -19.24822 -19.19368 -18.07874 -17.25188 -16.73694 -16.62299 -16.30412 -15.87657 -15.42383 -15.29622 -14.99979 -14.29961 -14.25700 -13.74895 -13.59125 -13.40765 -13.22955 -13.09926 -12.99723 -12.73080 -12.60331 -12.19319 -12.14687 -11.86650 -11.67374 -11.12258 -11.03416 -10.98284 -10.86462 -10.59756 -9.98480 -8.99159 -7.91866 -5.21871 0.64607 1.49724 1.52546 1.58723 1.69952 1.81288 1.87661 2.34772 2.58352 3.22846 3.42077 3.66835 3.79169 3.89763 4.06607 4.12559 4.21332 4.33742 4.36332 4.54859 4.59287 4.83962 4.89668 4.93259 4.96879 4.99683 5.16328 5.25842 5.34234 5.37482 5.52271 5.64558 6.28508 6.28856 6.63252 7.13249 7.31257 7.35801 8.09815 8.33621 9.30928 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.017068 B = 0.004173 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.108587 B = 6707.874395 C = 8040.367459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.138 3.862 3 H 0.059 0.941 4 C 0.145 3.855 5 N -0.744 5.744 6 C -0.248 4.248 7 H 0.079 0.921 8 C -0.072 4.072 9 N -0.968 5.968 10 Si 0.974 3.026 11 H -0.275 1.275 12 H -0.298 1.298 13 H -0.280 1.280 14 N -0.708 5.708 15 C 0.517 3.483 16 O -0.582 6.582 17 C -0.120 4.120 18 C -0.004 4.004 19 C 0.222 3.778 20 N -0.583 5.583 21 C 0.276 3.724 22 N -0.475 5.475 23 H 0.459 0.541 24 N -0.339 5.339 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.053 0.947 28 H 0.037 0.963 29 H 0.040 0.960 30 H 0.374 0.626 31 H 0.251 0.749 32 H 0.409 0.591 33 H 0.097 0.903 34 H 0.114 0.886 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.344 -3.987 -17.339 19.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.033 3.967 3 H 0.077 0.923 4 C 0.019 3.981 5 N -0.388 5.388 6 C -0.380 4.380 7 H 0.097 0.903 8 C -0.265 4.265 9 N -0.618 5.618 10 Si 0.803 3.197 11 H -0.201 1.201 12 H -0.224 1.224 13 H -0.206 1.206 14 N -0.359 5.359 15 C 0.304 3.696 16 O -0.463 6.463 17 C -0.161 4.161 18 C -0.045 4.045 19 C -0.061 4.061 20 N -0.313 5.313 21 C -0.022 4.022 22 N -0.194 5.194 23 H 0.308 0.692 24 N -0.170 5.170 25 H 0.091 0.909 26 H 0.097 0.903 27 H 0.072 0.928 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.206 0.794 31 H 0.059 0.941 32 H 0.245 0.755 33 H 0.115 0.885 34 H 0.132 0.868 35 H 0.111 0.889 36 H 0.102 0.898 37 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -9.048 -3.131 -16.951 19.468 hybrid contribution 1.184 -0.891 -0.110 1.486 sum -7.864 -4.023 -17.061 19.212 Atomic orbital electron populations 1.21995 0.92674 1.03086 1.02640 1.21099 0.95361 0.96166 0.84032 0.92268 1.21131 0.84018 0.97984 0.94995 1.42541 1.01879 1.69974 1.24358 1.19613 0.89941 1.28646 0.99774 0.90335 1.25558 0.97491 1.02948 1.00487 1.69823 1.07059 1.52591 1.32346 0.85218 0.77053 0.78624 0.78853 1.20112 1.22414 1.20636 1.45977 1.66263 1.14619 1.09036 1.20853 0.76589 0.86852 0.85270 1.90653 1.52426 1.17357 1.85850 1.21460 1.04038 0.99403 0.91157 1.19500 1.02457 0.96118 0.86403 1.24206 0.87613 0.97227 0.97059 1.70458 1.21037 1.24017 1.15764 1.27063 0.92037 0.91383 0.91704 1.48072 1.05172 1.43682 1.22508 0.69221 1.77908 1.17477 1.19229 1.02368 0.90900 0.90290 0.92815 0.94547 0.94195 0.79358 0.94070 0.75518 0.88466 0.86775 0.88857 0.89815 0.71181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.80 9.48 71.98 0.68 -3.12 16 2 C 0.14 4.67 2.73 45.00 0.12 4.79 16 3 H 0.06 2.34 7.58 -2.39 -0.02 2.32 16 4 C 0.15 5.56 5.82 86.38 0.50 6.07 16 5 N -0.74 -37.18 5.43 -343.44 -1.87 -39.05 16 6 C -0.25 -13.63 9.99 84.03 0.84 -12.79 16 7 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 8 C -0.07 -4.12 5.50 84.86 0.47 -3.66 16 9 N -0.97 -59.33 13.06 21.65 0.28 -59.05 16 10 Si 0.97 45.77 29.55 68.60 2.03 47.79 16 11 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 12 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 13 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 14 N -0.71 -22.82 4.52 -442.52 -2.00 -24.82 16 15 C 0.52 17.11 7.79 87.66 0.68 17.79 16 16 O -0.58 -22.95 15.64 -3.04 -0.05 -23.00 16 17 C -0.12 -3.22 5.68 29.85 0.17 -3.05 16 18 C 0.00 -0.12 5.13 29.85 0.15 0.03 16 19 C 0.22 5.89 7.39 138.63 1.03 6.91 16 20 N -0.58 -14.76 11.19 -191.80 -2.15 -16.90 16 21 C 0.28 3.97 13.13 180.36 2.37 6.34 16 22 N -0.47 -6.75 7.45 -60.49 -0.45 -7.20 16 23 H 0.46 2.54 8.96 -213.10 -1.91 0.63 16 24 N -0.34 -8.08 12.80 -51.33 -0.66 -8.74 16 25 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.37 20.34 7.33 -92.71 -0.68 19.66 16 31 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 32 H 0.41 12.34 8.60 -92.71 -0.80 11.54 16 33 H 0.10 2.76 8.14 -2.38 -0.02 2.74 16 34 H 0.11 2.54 8.14 -2.39 -0.02 2.53 16 35 H 0.09 2.51 8.10 -2.39 -0.02 2.49 16 36 H 0.08 2.56 8.10 -2.39 -0.02 2.54 16 37 H 0.27 0.62 8.06 -2.91 -0.02 0.59 16 Total: -1.00 -77.69 323.48 -0.12 -77.81 By element: Atomic # 1 Polarization: 36.12 SS G_CDS: -2.28 Total: 33.85 kcal Atomic # 6 Polarization: 12.30 SS G_CDS: 7.01 Total: 19.32 kcal Atomic # 7 Polarization: -148.93 SS G_CDS: -6.84 Total: -155.76 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.05 Total: -23.00 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.79 kcal Total: -77.69 -0.12 -77.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699399398.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.051 kcal (2) G-P(sol) polarization free energy of solvation -77.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds