Wall clock time and date at job start Mon Mar 30 2020 00:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08991 * 109.47231 * 2 1 4 4 C 1.52999 * 109.46652 * 240.00299 * 2 1 3 5 5 N 1.46500 * 109.47076 * 185.00212 * 4 2 1 6 6 C 1.46502 * 120.00047 * 270.00324 * 5 4 2 7 7 C 1.36938 * 120.00227 * 89.99643 * 5 4 2 8 8 H 1.08000 * 119.99946 * 342.71019 * 7 5 4 9 9 C 1.38810 * 119.99993 * 162.98061 * 7 5 4 10 10 N 1.31619 * 120.00121 * 345.45701 * 9 7 5 11 11 Si 1.86805 * 120.00005 * 165.45656 * 9 7 5 12 12 H 1.48502 * 109.46914 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47208 * 120.00104 * 11 9 7 14 14 H 1.48503 * 109.46906 * 240.00007 * 11 9 7 15 15 N 1.46496 * 109.47061 * 120.00784 * 2 1 3 16 16 C 1.34778 * 119.99681 * 274.99533 * 15 2 1 17 17 O 1.21555 * 120.00014 * 359.97438 * 16 15 2 18 18 C 1.47875 * 120.00159 * 180.02562 * 16 15 2 19 19 N 1.34544 * 126.04526 * 0.02562 * 18 16 15 20 20 C 1.30872 * 107.27142 * 180.02562 * 19 18 16 21 21 N 1.34584 * 107.62246 * 359.97438 * 20 19 18 22 22 C 1.46497 * 125.75115 * 179.97438 * 21 20 19 23 23 N 1.28860 * 108.50407 * 359.73539 * 21 20 19 24 24 H 1.09004 * 109.46887 * 299.99653 * 1 2 3 25 25 H 1.08994 * 109.47309 * 59.99530 * 1 2 3 26 26 H 1.08998 * 109.47078 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47636 * 64.99998 * 4 2 1 28 28 H 1.08997 * 109.47375 * 304.99994 * 4 2 1 29 29 H 1.09001 * 109.46956 * 265.07799 * 6 5 4 30 30 H 1.09002 * 109.47194 * 25.07385 * 6 5 4 31 31 H 1.08996 * 109.47418 * 145.08148 * 6 5 4 32 32 H 0.97005 * 120.00193 * 180.02562 * 10 9 7 33 33 H 0.96999 * 120.00537 * 94.99574 * 15 2 1 34 34 H 1.07996 * 126.19323 * 180.02562 * 20 19 18 35 35 H 1.09000 * 109.47177 * 90.00030 * 22 21 20 36 36 H 1.09005 * 109.47657 * 210.00268 * 22 21 20 37 37 H 1.08998 * 109.47051 * 330.00412 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5000 -0.8264 -1.1907 6 6 4.3343 0.2340 -1.7613 7 6 4.0849 -1.9159 -0.6025 8 1 3.5078 -2.5498 0.0544 9 6 5.4211 -2.2024 -0.8460 10 7 6.0481 -1.6175 -1.8446 11 14 6.3293 -3.4181 0.2434 12 1 5.4069 -3.9321 1.2875 13 1 6.8232 -4.5494 -0.5820 14 1 7.4800 -2.7386 0.8910 15 7 2.0183 -0.6908 1.1960 16 6 2.1471 -0.0185 2.3571 17 8 1.8585 1.1611 2.4116 18 6 2.6405 -0.7155 3.5643 19 7 2.9947 -2.0112 3.6412 20 6 3.3728 -2.2382 4.8734 21 7 3.2527 -1.0843 5.5556 22 6 3.5698 -0.8908 6.9726 23 7 2.8164 -0.1771 4.7511 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.7516 -0.1583 -2.1370 28 1 1.6053 -1.7197 -1.2953 29 1 4.6148 -0.0330 -2.7802 30 1 3.7756 1.1699 -1.7718 31 1 5.2332 0.3541 -1.1567 32 1 6.9818 -1.8180 -2.0150 33 1 2.2490 -1.6319 1.1525 34 1 3.7194 -3.1807 5.2707 35 1 4.6139 -0.5944 7.0741 36 1 2.9292 -0.1114 7.3853 37 1 3.4025 -1.8225 7.5129 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699450262.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:14 Heat of formation + Delta-G solvation = 87.676302 kcal Electronic energy + Delta-G solvation = -20894.700098 eV Core-core repulsion = 17710.550756 eV Total energy + Delta-G solvation = -3184.149342 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.27344 -39.04123 -36.30067 -34.52250 -33.98153 -31.61049 -31.31744 -30.10388 -27.71308 -26.11939 -25.54550 -24.00929 -22.33061 -21.55152 -20.31680 -19.74213 -17.97413 -16.68850 -16.66866 -16.05273 -15.79005 -14.97273 -14.77927 -14.30128 -13.68761 -13.64400 -13.37921 -13.25205 -12.86413 -12.85817 -12.12211 -11.88839 -11.81845 -11.53887 -11.00103 -10.80491 -10.75329 -10.35394 -10.30328 -10.25878 -10.23296 -9.92196 -9.78035 -9.63069 -9.41778 -8.47301 -8.37358 -6.74346 -5.65901 -3.07036 1.59487 2.25491 2.33726 3.41850 3.49328 3.52865 3.54564 3.85235 4.29477 4.39820 4.56241 4.77899 4.88795 5.04102 5.18651 5.39472 5.55458 5.67043 5.87395 5.99711 6.13043 6.20357 6.26470 6.44238 6.48124 6.53017 6.57666 6.82949 6.88604 7.14694 7.51560 7.75538 7.87769 8.00042 8.31790 8.42374 8.76793 9.29275 9.93329 10.40012 11.39314 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.014752 B = 0.007882 C = 0.005617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.650078 B = 3551.714820 C = 4983.382417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.117 3.883 3 H 0.080 0.920 4 C 0.142 3.858 5 N -0.602 5.602 6 C 0.165 3.835 7 C -0.242 4.242 8 H 0.071 0.929 9 C -0.001 4.001 10 N -0.909 5.909 11 Si 0.897 3.103 12 H -0.271 1.271 13 H -0.293 1.293 14 H -0.294 1.294 15 N -0.671 5.671 16 C 0.612 3.388 17 O -0.539 6.539 18 C 0.155 3.845 19 N -0.474 5.474 20 C 0.185 3.815 21 N -0.312 5.312 22 C 0.088 3.912 23 N -0.261 5.261 24 H 0.053 0.947 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.027 0.973 30 H -0.005 1.005 31 H 0.047 0.953 32 H 0.250 0.750 33 H 0.413 0.587 34 H 0.224 0.776 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.972 -1.387 14.202 15.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.009 3.991 3 H 0.098 0.902 4 C 0.013 3.987 5 N -0.324 5.324 6 C 0.020 3.980 7 C -0.372 4.372 8 H 0.089 0.911 9 C -0.198 4.198 10 N -0.555 5.555 11 Si 0.727 3.273 12 H -0.196 1.196 13 H -0.220 1.220 14 H -0.221 1.221 15 N -0.323 5.323 16 C 0.393 3.607 17 O -0.415 6.415 18 C -0.126 4.126 19 N -0.198 5.198 20 C -0.111 4.111 21 N -0.107 5.107 22 C -0.053 4.053 23 N -0.100 5.100 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.045 0.955 30 H 0.014 0.986 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.251 0.749 34 H 0.240 0.760 35 H 0.106 0.894 36 H 0.116 0.884 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.132 -0.126 14.002 15.714 hybrid contribution 1.108 -1.358 0.974 2.005 sum -6.024 -1.484 14.976 16.210 Atomic orbital electron populations 1.22136 0.96268 1.01632 1.01781 1.22005 0.92415 0.98410 0.86221 0.90205 1.21053 0.86036 0.98389 0.93174 1.43922 0.98944 1.21322 1.68185 1.20805 0.93063 0.86024 0.98059 1.19156 0.94071 1.03748 1.20190 0.91142 1.24867 0.98087 0.99304 0.97586 1.70122 1.10591 1.46126 1.28686 0.86264 0.80009 0.80570 0.80460 1.19607 1.22007 1.22069 1.45680 1.63925 1.14960 1.07707 1.16285 0.78043 0.85261 0.81126 1.90757 1.51371 1.14764 1.84574 1.23960 1.05639 0.89057 0.93905 1.71359 1.16331 1.14848 1.17297 1.26495 1.02518 0.93770 0.88299 1.47374 1.45015 1.07140 1.11219 1.22170 1.03447 1.05059 0.74600 1.74317 1.16419 1.17536 1.01732 0.92819 0.91860 0.92710 0.92690 0.92835 0.95505 0.98602 0.93428 0.93984 0.74891 0.76006 0.89372 0.88411 0.88216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 9.48 37.16 0.35 -2.08 16 2 C 0.12 2.20 2.88 -67.93 -0.20 2.01 16 3 H 0.08 1.66 7.58 -51.93 -0.39 1.27 16 4 C 0.14 2.84 5.30 -4.04 -0.02 2.82 16 5 N -0.60 -15.01 2.82 -181.12 -0.51 -15.52 16 6 C 0.17 4.20 8.97 59.85 0.54 4.74 16 7 C -0.24 -6.51 8.81 -15.06 -0.13 -6.64 16 8 H 0.07 1.83 6.40 -52.49 -0.34 1.49 16 9 C 0.00 -0.03 5.09 -17.43 -0.09 -0.12 16 10 N -0.91 -26.87 10.45 55.49 0.58 -26.29 16 11 Si 0.90 22.17 29.58 -169.99 -5.03 17.14 16 12 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 13 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 14 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 15 N -0.67 -13.51 4.48 -54.74 -0.25 -13.76 16 16 C 0.61 13.01 7.80 -12.32 -0.10 12.91 16 17 O -0.54 -12.60 16.75 5.32 0.09 -12.51 16 18 C 0.15 3.02 7.96 -156.36 -1.24 1.78 16 19 N -0.47 -8.41 11.09 -12.37 -0.14 -8.55 16 20 C 0.18 2.36 12.62 -90.48 -1.14 1.22 16 21 N -0.31 -3.92 3.72 -69.39 -0.26 -4.17 16 22 C 0.09 0.54 11.38 59.85 0.68 1.22 16 23 N -0.26 -4.60 12.08 32.07 0.39 -4.21 16 24 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.05 1.01 8.07 -51.93 -0.42 0.59 16 28 H 0.05 1.03 8.04 -51.93 -0.42 0.62 16 29 H 0.03 0.72 7.51 -51.93 -0.39 0.33 16 30 H 0.00 -0.10 8.03 -51.93 -0.42 -0.52 16 31 H 0.05 1.33 6.95 -51.93 -0.36 0.97 16 32 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.41 8.46 6.29 -40.82 -0.26 8.20 16 34 H 0.22 1.61 8.06 -52.49 -0.42 1.19 16 35 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.10 0.25 8.14 -51.93 -0.42 -0.18 16 LS Contribution 316.67 15.07 4.77 4.77 Total: -1.00 -36.24 316.67 -6.79 -43.03 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -5.08 Total: 2.22 kcal Atomic # 6 Polarization: 19.20 SS G_CDS: -1.35 Total: 17.85 kcal Atomic # 7 Polarization: -72.32 SS G_CDS: -0.18 Total: -72.51 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.09 Total: -12.51 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.03 Total: 17.14 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -36.24 -6.79 -43.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699450262.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.704 kcal (2) G-P(sol) polarization free energy of solvation -36.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds