Wall clock time and date at job start Mon Mar 30 2020 00:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08991 * 109.47231 * 2 1 4 4 C 1.52999 * 109.46652 * 240.00299 * 2 1 3 5 5 N 1.46500 * 109.47076 * 185.00212 * 4 2 1 6 6 C 1.46502 * 120.00047 * 270.00324 * 5 4 2 7 7 C 1.36938 * 120.00227 * 89.99643 * 5 4 2 8 8 H 1.08000 * 119.99946 * 342.71019 * 7 5 4 9 9 C 1.38810 * 119.99993 * 162.98061 * 7 5 4 10 10 N 1.31619 * 120.00121 * 345.45701 * 9 7 5 11 11 Si 1.86805 * 120.00005 * 165.45656 * 9 7 5 12 12 H 1.48502 * 109.46914 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47208 * 120.00104 * 11 9 7 14 14 H 1.48503 * 109.46906 * 240.00007 * 11 9 7 15 15 N 1.46496 * 109.47061 * 120.00784 * 2 1 3 16 16 C 1.34778 * 119.99681 * 274.99533 * 15 2 1 17 17 O 1.21555 * 120.00014 * 359.97438 * 16 15 2 18 18 C 1.47875 * 120.00159 * 180.02562 * 16 15 2 19 19 N 1.34544 * 126.04526 * 0.02562 * 18 16 15 20 20 C 1.30872 * 107.27142 * 180.02562 * 19 18 16 21 21 N 1.34584 * 107.62246 * 359.97438 * 20 19 18 22 22 C 1.46497 * 125.75115 * 179.97438 * 21 20 19 23 23 N 1.28860 * 108.50407 * 359.73539 * 21 20 19 24 24 H 1.09004 * 109.46887 * 299.99653 * 1 2 3 25 25 H 1.08994 * 109.47309 * 59.99530 * 1 2 3 26 26 H 1.08998 * 109.47078 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47636 * 64.99998 * 4 2 1 28 28 H 1.08997 * 109.47375 * 304.99994 * 4 2 1 29 29 H 1.09001 * 109.46956 * 265.07799 * 6 5 4 30 30 H 1.09002 * 109.47194 * 25.07385 * 6 5 4 31 31 H 1.08996 * 109.47418 * 145.08148 * 6 5 4 32 32 H 0.97005 * 120.00193 * 180.02562 * 10 9 7 33 33 H 0.96999 * 120.00537 * 94.99574 * 15 2 1 34 34 H 1.07996 * 126.19323 * 180.02562 * 20 19 18 35 35 H 1.09000 * 109.47177 * 90.00030 * 22 21 20 36 36 H 1.09005 * 109.47657 * 210.00268 * 22 21 20 37 37 H 1.08998 * 109.47051 * 330.00412 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5000 -0.8264 -1.1907 6 6 4.3343 0.2340 -1.7613 7 6 4.0849 -1.9159 -0.6025 8 1 3.5078 -2.5498 0.0544 9 6 5.4211 -2.2024 -0.8460 10 7 6.0481 -1.6175 -1.8446 11 14 6.3293 -3.4181 0.2434 12 1 5.4069 -3.9321 1.2875 13 1 6.8232 -4.5494 -0.5820 14 1 7.4800 -2.7386 0.8910 15 7 2.0183 -0.6908 1.1960 16 6 2.1471 -0.0185 2.3571 17 8 1.8585 1.1611 2.4116 18 6 2.6405 -0.7155 3.5643 19 7 2.9947 -2.0112 3.6412 20 6 3.3728 -2.2382 4.8734 21 7 3.2527 -1.0843 5.5556 22 6 3.5698 -0.8908 6.9726 23 7 2.8164 -0.1771 4.7511 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.7516 -0.1583 -2.1370 28 1 1.6053 -1.7197 -1.2953 29 1 4.6148 -0.0330 -2.7802 30 1 3.7756 1.1699 -1.7718 31 1 5.2332 0.3541 -1.1567 32 1 6.9818 -1.8180 -2.0150 33 1 2.2490 -1.6319 1.1525 34 1 3.7194 -3.1807 5.2707 35 1 4.6139 -0.5944 7.0741 36 1 2.9292 -0.1114 7.3853 37 1 3.4025 -1.8225 7.5129 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699450262.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:14 Heat of formation + Delta-G solvation = 62.027413 kcal Electronic energy + Delta-G solvation = -20895.812317 eV Core-core repulsion = 17710.550756 eV Total energy + Delta-G solvation = -3185.261562 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.40018 -40.63344 -38.07552 -35.82070 -35.50433 -33.16748 -32.75566 -31.74377 -28.59472 -28.05876 -27.36906 -25.29694 -23.64500 -23.09127 -21.79460 -21.32505 -19.33205 -18.49778 -17.74345 -17.33872 -17.24328 -16.92697 -16.03529 -15.74115 -15.53282 -15.11230 -14.83308 -14.54835 -14.00350 -13.96298 -13.76258 -13.45915 -13.08343 -12.85690 -12.81912 -12.71519 -12.54088 -12.18850 -11.97573 -11.88613 -11.75180 -11.49928 -11.42871 -11.26361 -10.58225 -10.55675 -9.94783 -8.79232 -7.77308 -5.19465 0.34165 1.16633 1.37210 1.45863 1.48100 1.60379 2.18365 2.37926 2.55126 3.20099 3.37070 3.52186 3.72179 3.90469 4.12456 4.34829 4.39664 4.42424 4.49709 4.67247 4.78019 4.85296 4.86187 4.88389 5.00602 5.15767 5.33101 5.37125 5.45965 5.57803 5.65454 5.69187 5.75649 6.34023 6.51897 7.01197 7.17091 7.23818 7.91041 8.33921 9.27216 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.014752 B = 0.007882 C = 0.005617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.650078 B = 3551.714820 C = 4983.382417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.121 3.879 3 H 0.056 0.944 4 C 0.142 3.858 5 N -0.617 5.617 6 C 0.180 3.820 7 C -0.233 4.233 8 H 0.081 0.919 9 C -0.062 4.062 10 N -0.944 5.944 11 Si 0.955 3.045 12 H -0.253 1.253 13 H -0.294 1.294 14 H -0.305 1.305 15 N -0.670 5.670 16 C 0.605 3.395 17 O -0.574 6.574 18 C 0.120 3.880 19 N -0.512 5.512 20 C 0.200 3.800 21 N -0.300 5.300 22 C 0.075 3.925 23 N -0.284 5.284 24 H 0.043 0.957 25 H 0.088 0.912 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.006 0.994 30 H 0.022 0.978 31 H 0.012 0.988 32 H 0.243 0.757 33 H 0.411 0.589 34 H 0.279 0.721 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.857 -2.946 16.254 18.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.014 3.986 3 H 0.074 0.926 4 C 0.016 3.984 5 N -0.339 5.339 6 C 0.035 3.965 7 C -0.363 4.363 8 H 0.098 0.902 9 C -0.256 4.256 10 N -0.593 5.593 11 Si 0.785 3.215 12 H -0.177 1.177 13 H -0.222 1.222 14 H -0.233 1.233 15 N -0.321 5.321 16 C 0.388 3.612 17 O -0.452 6.452 18 C -0.160 4.160 19 N -0.238 5.238 20 C -0.095 4.095 21 N -0.096 5.096 22 C -0.064 4.064 23 N -0.125 5.125 24 H 0.062 0.938 25 H 0.107 0.893 26 H 0.088 0.912 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.025 0.975 30 H 0.040 0.960 31 H 0.031 0.969 32 H 0.052 0.948 33 H 0.249 0.751 34 H 0.294 0.706 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -8.061 -1.700 16.087 18.074 hybrid contribution 1.350 -0.866 0.473 1.672 sum -6.711 -2.566 16.560 18.052 Atomic orbital electron populations 1.22027 0.93094 1.02894 1.02547 1.21918 0.94781 0.96640 0.85282 0.92562 1.21266 0.83115 0.99595 0.94469 1.44157 1.01048 1.20680 1.68037 1.20502 0.92400 0.87440 0.96133 1.19495 0.94131 1.03475 1.19208 0.90187 1.25612 0.99234 1.01700 0.99057 1.70281 1.10313 1.48187 1.30486 0.85330 0.78585 0.78439 0.79178 1.17665 1.22186 1.23331 1.45719 1.63715 1.14731 1.07898 1.16616 0.77546 0.85034 0.82006 1.90712 1.53040 1.16124 1.85338 1.23588 1.08278 0.90150 0.93936 1.71262 1.18042 1.14174 1.20323 1.27470 0.99983 0.95173 0.86865 1.47842 1.42877 1.06256 1.12631 1.22766 1.04339 1.07892 0.71356 1.74212 1.17020 1.19449 1.01864 0.93801 0.89326 0.91162 0.90581 0.91621 0.97533 0.95989 0.96868 0.94792 0.75114 0.70606 0.87908 0.88188 0.83615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.21 9.48 71.98 0.68 -3.53 16 2 C 0.12 4.46 2.88 44.99 0.13 4.58 16 3 H 0.06 2.36 7.58 -2.39 -0.02 2.34 16 4 C 0.14 5.49 5.30 86.38 0.46 5.95 16 5 N -0.62 -30.67 2.82 -726.95 -2.05 -32.73 16 6 C 0.18 9.34 8.97 127.77 1.15 10.49 16 7 C -0.23 -12.46 8.81 84.03 0.74 -11.72 16 8 H 0.08 4.07 6.40 -2.91 -0.02 4.05 16 9 C -0.06 -3.54 5.09 84.86 0.43 -3.10 16 10 N -0.94 -57.13 10.45 21.65 0.23 -56.90 16 11 Si 0.96 45.79 29.58 68.60 2.03 47.81 16 12 H -0.25 -11.22 7.11 99.48 0.71 -10.51 16 13 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 14 H -0.31 -15.09 7.11 99.48 0.71 -14.39 16 15 N -0.67 -26.94 4.48 -445.38 -2.00 -28.93 16 16 C 0.61 26.18 7.80 86.79 0.68 26.86 16 17 O -0.57 -27.59 16.75 -3.89 -0.07 -27.66 16 18 C 0.12 4.65 7.96 137.13 1.09 5.75 16 19 N -0.51 -17.44 11.09 -193.03 -2.14 -19.58 16 20 C 0.20 4.43 12.62 180.30 2.27 6.71 16 21 N -0.30 -6.75 3.72 -373.46 -1.39 -8.14 16 22 C 0.07 0.63 11.38 127.77 1.45 2.08 16 23 N -0.28 -9.81 12.08 -52.44 -0.63 -10.44 16 24 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.08 2.63 8.07 -2.39 -0.02 2.61 16 28 H 0.07 2.40 8.04 -2.39 -0.02 2.38 16 29 H 0.01 0.35 7.51 -2.39 -0.02 0.34 16 30 H 0.02 0.99 8.03 -2.39 -0.02 0.97 16 31 H 0.01 0.73 6.95 -2.39 -0.02 0.72 16 32 H 0.24 14.40 8.31 -92.70 -0.77 13.63 16 33 H 0.41 16.68 6.29 -92.71 -0.58 16.10 16 34 H 0.28 2.49 8.06 -2.91 -0.02 2.47 16 35 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 37 H 0.15 -0.08 8.14 -2.39 -0.02 -0.10 16 Total: -1.00 -82.17 316.67 3.56 -78.61 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 0.50 Total: 13.90 kcal Atomic # 6 Polarization: 34.97 SS G_CDS: 9.08 Total: 44.05 kcal Atomic # 7 Polarization: -148.74 SS G_CDS: -7.99 Total: -156.72 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.07 Total: -27.66 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.81 kcal Total: -82.17 3.56 -78.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699450262.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.637 kcal (2) G-P(sol) polarization free energy of solvation -82.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds