Wall clock time and date at job start Mon Mar 30 2020 00:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.47203 * 2 1 4 4 C 1.53004 * 109.46960 * 119.99988 * 2 1 3 5 5 N 1.46491 * 109.47435 * 174.99983 * 4 2 1 6 6 C 1.46501 * 120.00296 * 269.99963 * 5 4 2 7 7 C 1.36933 * 120.00172 * 90.00022 * 5 4 2 8 8 H 1.07999 * 120.00482 * 23.62055 * 7 5 4 9 9 C 1.38815 * 120.00138 * 203.63073 * 7 5 4 10 10 N 1.31624 * 120.00019 * 11.29046 * 9 7 5 11 11 Si 1.86806 * 120.00165 * 191.29708 * 9 7 5 12 12 H 1.48500 * 109.46980 * 59.99452 * 11 9 7 13 13 H 1.48490 * 109.47168 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.46643 * 299.99764 * 11 9 7 15 15 N 1.46497 * 109.47356 * 239.99478 * 2 1 3 16 16 C 1.34781 * 119.99793 * 85.00479 * 15 2 1 17 17 O 1.21549 * 119.99962 * 359.97438 * 16 15 2 18 18 C 1.47873 * 119.99996 * 179.97438 * 16 15 2 19 19 N 1.34546 * 126.04851 * 0.02974 * 18 16 15 20 20 C 1.30873 * 107.26825 * 179.97438 * 19 18 16 21 21 N 1.34577 * 107.62469 * 359.97438 * 20 19 18 22 22 C 1.46496 * 125.74709 * 180.02562 * 21 20 19 23 23 N 1.28855 * 108.50703 * 359.97438 * 21 20 19 24 24 H 1.09002 * 109.47400 * 300.00540 * 1 2 3 25 25 H 1.09003 * 109.47238 * 60.00292 * 1 2 3 26 26 H 1.09004 * 109.47598 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46909 * 295.00189 * 4 2 1 28 28 H 1.09004 * 109.47313 * 54.99716 * 4 2 1 29 29 H 1.09001 * 109.47034 * 94.54182 * 6 5 4 30 30 H 1.08997 * 109.47851 * 214.55100 * 6 5 4 31 31 H 1.09001 * 109.46873 * 334.55134 * 6 5 4 32 32 H 0.97000 * 119.99404 * 180.02562 * 10 9 7 33 33 H 0.96995 * 120.00553 * 265.00215 * 15 2 1 34 34 H 1.07995 * 126.18291 * 180.02562 * 20 19 18 35 35 H 1.08999 * 109.47425 * 89.99732 * 22 21 20 36 36 H 1.09007 * 109.47388 * 209.99449 * 22 21 20 37 37 H 1.09005 * 109.47441 * 329.99668 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.4999 -0.8265 1.1907 6 6 4.1257 -1.9920 0.5614 7 6 4.2797 0.1647 1.7242 8 1 3.8833 0.8069 2.4967 9 6 5.5797 0.3442 1.2719 10 7 5.9917 -0.2797 0.1886 11 14 6.7447 1.4710 2.2007 12 1 6.9135 0.9724 3.5893 13 1 8.0635 1.4906 1.5185 14 1 6.1831 2.8454 2.2331 15 7 2.0183 -0.6907 -1.1961 16 6 2.1471 -0.0184 -2.3571 17 8 1.8577 1.1609 -2.4118 18 6 2.6406 -0.7154 -3.5643 19 7 2.9939 -2.0113 -3.6415 20 6 3.3724 -2.2381 -4.8736 21 7 3.2524 -1.0842 -5.5556 22 6 3.5701 -0.8905 -6.9725 23 7 2.8100 -0.1786 -4.7528 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.7515 -0.1583 2.1370 28 1 1.6052 -1.7198 1.2952 29 1 4.3533 -1.7642 -0.4799 30 1 5.0468 -2.2392 1.0891 31 1 3.4423 -2.8400 0.6067 32 1 6.9003 -0.1545 -0.1272 33 1 2.2490 -1.6318 -1.1525 34 1 3.7177 -3.1809 -5.2712 35 1 2.6836 -1.0909 -7.5744 36 1 3.8947 0.1374 -7.1350 37 1 4.3683 -1.5738 -7.2627 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699450263.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:17 Heat of formation + Delta-G solvation = 85.861567 kcal Electronic energy + Delta-G solvation = -20892.657630 eV Core-core repulsion = 17708.429595 eV Total energy + Delta-G solvation = -3184.228035 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.21266 -38.94160 -36.22237 -34.46425 -33.91174 -31.55286 -31.19578 -30.16168 -27.66176 -26.05621 -25.51679 -23.94366 -22.27188 -21.46788 -20.23907 -19.75472 -17.83021 -16.70188 -16.61357 -16.15407 -15.62699 -14.80990 -14.72384 -14.23440 -13.63484 -13.61022 -13.33681 -13.15732 -13.02197 -12.71773 -12.05195 -11.87134 -11.75838 -11.34216 -10.98934 -10.75497 -10.70857 -10.46694 -10.27802 -10.21922 -10.09918 -9.90535 -9.77119 -9.54646 -9.34838 -8.50498 -8.26654 -6.64368 -5.62906 -3.09620 1.67288 2.31472 2.40152 3.45798 3.50233 3.51005 3.59982 3.96854 4.34095 4.44192 4.58523 4.81303 4.93823 5.08860 5.24749 5.44354 5.58802 5.77638 5.94921 6.08475 6.18470 6.21770 6.33830 6.49119 6.56457 6.58980 6.65430 6.79242 6.96682 7.24446 7.44609 7.83420 7.89982 8.04463 8.36185 8.48699 8.85871 9.32318 9.95081 10.43775 11.41502 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.017560 B = 0.006344 C = 0.005364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.123036 B = 4412.783784 C = 5218.540218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.117 3.883 3 H 0.088 0.912 4 C 0.143 3.857 5 N -0.598 5.598 6 C 0.162 3.838 7 C -0.256 4.256 8 H 0.067 0.933 9 C 0.005 3.995 10 N -0.902 5.902 11 Si 0.903 3.097 12 H -0.285 1.285 13 H -0.292 1.292 14 H -0.283 1.283 15 N -0.675 5.675 16 C 0.616 3.384 17 O -0.533 6.533 18 C 0.159 3.841 19 N -0.477 5.477 20 C 0.185 3.815 21 N -0.312 5.312 22 C 0.089 3.911 23 N -0.261 5.261 24 H 0.062 0.938 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.061 0.939 28 H 0.043 0.957 29 H 0.036 0.964 30 H 0.041 0.959 31 H -0.005 1.005 32 H 0.250 0.750 33 H 0.405 0.595 34 H 0.223 0.777 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.738 -6.746 -12.124 15.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.009 3.991 3 H 0.106 0.894 4 C 0.015 3.985 5 N -0.320 5.320 6 C 0.017 3.983 7 C -0.386 4.386 8 H 0.085 0.915 9 C -0.194 4.194 10 N -0.547 5.547 11 Si 0.733 3.267 12 H -0.211 1.211 13 H -0.218 1.218 14 H -0.210 1.210 15 N -0.325 5.325 16 C 0.397 3.603 17 O -0.408 6.408 18 C -0.121 4.121 19 N -0.202 5.202 20 C -0.111 4.111 21 N -0.107 5.107 22 C -0.052 4.052 23 N -0.100 5.100 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.014 0.986 32 H 0.060 0.940 33 H 0.241 0.759 34 H 0.240 0.760 35 H 0.105 0.895 36 H 0.116 0.884 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.898 -5.464 -12.069 14.937 hybrid contribution 1.198 -0.029 -0.085 1.201 sum -5.700 -5.493 -12.154 14.505 Atomic orbital electron populations 1.22165 0.96690 1.01248 1.01775 1.21984 0.91812 0.99258 0.85997 0.89423 1.21202 0.85902 0.97290 0.94113 1.43898 0.99023 1.20928 1.68114 1.20857 0.94393 0.84978 0.98079 1.19123 0.94578 1.10663 1.14235 0.91480 1.25039 0.98945 0.99069 0.96325 1.70061 1.17081 1.45559 1.21976 0.86361 0.80340 0.80838 0.79131 1.21138 1.21815 1.20968 1.45495 1.64635 1.14243 1.08102 1.16207 0.77848 0.85215 0.81029 1.90762 1.50886 1.14674 1.84441 1.23950 1.05367 0.89011 0.93794 1.71290 1.16673 1.14901 1.17342 1.26442 1.02641 0.93668 0.88358 1.47338 1.44965 1.07201 1.11244 1.22159 1.02771 1.05716 0.74600 1.74330 1.16326 1.17550 1.01750 0.91893 0.92931 0.93048 0.92122 0.93879 0.94620 0.94067 0.98638 0.93966 0.75911 0.76037 0.89488 0.88396 0.88223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 9.48 37.15 0.35 -2.21 16 2 C 0.12 2.34 2.88 -67.93 -0.20 2.15 16 3 H 0.09 2.08 7.58 -51.93 -0.39 1.68 16 4 C 0.14 2.91 5.33 -4.04 -0.02 2.88 16 5 N -0.60 -15.00 2.78 -181.12 -0.50 -15.50 16 6 C 0.16 3.97 7.61 59.85 0.46 4.43 16 7 C -0.26 -7.16 9.66 -15.06 -0.15 -7.31 16 8 H 0.07 1.83 7.85 -52.49 -0.41 1.42 16 9 C 0.00 0.14 5.13 -17.43 -0.09 0.05 16 10 N -0.90 -27.00 10.66 55.49 0.59 -26.41 16 11 Si 0.90 22.67 29.57 -169.99 -5.03 17.64 16 12 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 13 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 14 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 15 N -0.67 -14.00 4.41 -54.74 -0.24 -14.24 16 16 C 0.62 13.85 7.80 -12.31 -0.10 13.75 16 17 O -0.53 -13.42 16.75 5.32 0.09 -13.33 16 18 C 0.16 3.22 7.96 -156.36 -1.24 1.97 16 19 N -0.48 -8.33 11.09 -12.37 -0.14 -8.46 16 20 C 0.18 2.31 12.62 -90.49 -1.14 1.17 16 21 N -0.31 -4.03 3.72 -69.39 -0.26 -4.29 16 22 C 0.09 0.57 11.38 59.84 0.68 1.25 16 23 N -0.26 -4.81 12.08 32.07 0.39 -4.42 16 24 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 1.18 8.03 -51.93 -0.42 0.76 16 28 H 0.04 0.77 7.86 -51.93 -0.41 0.37 16 29 H 0.04 0.96 6.90 -51.93 -0.36 0.60 16 30 H 0.04 1.10 7.30 -51.93 -0.38 0.72 16 31 H 0.00 -0.10 7.84 -51.93 -0.41 -0.51 16 32 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.41 8.10 6.88 -40.82 -0.28 7.82 16 34 H 0.22 1.47 8.06 -52.49 -0.42 1.05 16 35 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 317.67 15.07 4.79 4.79 Total: -1.00 -37.20 317.67 -6.91 -44.10 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -5.15 Total: 1.97 kcal Atomic # 6 Polarization: 19.59 SS G_CDS: -1.45 Total: 18.15 kcal Atomic # 7 Polarization: -73.15 SS G_CDS: -0.16 Total: -73.32 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.09 Total: -13.33 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.03 Total: 17.64 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -37.20 -6.91 -44.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699450263.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.965 kcal (2) G-P(sol) polarization free energy of solvation -37.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds