Wall clock time and date at job start Mon Mar 30 2020 00:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.47203 * 2 1 4 4 C 1.53004 * 109.46960 * 119.99988 * 2 1 3 5 5 N 1.46491 * 109.47435 * 174.99983 * 4 2 1 6 6 C 1.46501 * 120.00296 * 269.99963 * 5 4 2 7 7 C 1.36933 * 120.00172 * 90.00022 * 5 4 2 8 8 H 1.07999 * 120.00482 * 23.62055 * 7 5 4 9 9 C 1.38815 * 120.00138 * 203.63073 * 7 5 4 10 10 N 1.31624 * 120.00019 * 11.29046 * 9 7 5 11 11 Si 1.86806 * 120.00165 * 191.29708 * 9 7 5 12 12 H 1.48500 * 109.46980 * 59.99452 * 11 9 7 13 13 H 1.48490 * 109.47168 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.46643 * 299.99764 * 11 9 7 15 15 N 1.46497 * 109.47356 * 239.99478 * 2 1 3 16 16 C 1.34781 * 119.99793 * 85.00479 * 15 2 1 17 17 O 1.21549 * 119.99962 * 359.97438 * 16 15 2 18 18 C 1.47873 * 119.99996 * 179.97438 * 16 15 2 19 19 N 1.34546 * 126.04851 * 0.02974 * 18 16 15 20 20 C 1.30873 * 107.26825 * 179.97438 * 19 18 16 21 21 N 1.34577 * 107.62469 * 359.97438 * 20 19 18 22 22 C 1.46496 * 125.74709 * 180.02562 * 21 20 19 23 23 N 1.28855 * 108.50703 * 359.97438 * 21 20 19 24 24 H 1.09002 * 109.47400 * 300.00540 * 1 2 3 25 25 H 1.09003 * 109.47238 * 60.00292 * 1 2 3 26 26 H 1.09004 * 109.47598 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46909 * 295.00189 * 4 2 1 28 28 H 1.09004 * 109.47313 * 54.99716 * 4 2 1 29 29 H 1.09001 * 109.47034 * 94.54182 * 6 5 4 30 30 H 1.08997 * 109.47851 * 214.55100 * 6 5 4 31 31 H 1.09001 * 109.46873 * 334.55134 * 6 5 4 32 32 H 0.97000 * 119.99404 * 180.02562 * 10 9 7 33 33 H 0.96995 * 120.00553 * 265.00215 * 15 2 1 34 34 H 1.07995 * 126.18291 * 180.02562 * 20 19 18 35 35 H 1.08999 * 109.47425 * 89.99732 * 22 21 20 36 36 H 1.09007 * 109.47388 * 209.99449 * 22 21 20 37 37 H 1.09005 * 109.47441 * 329.99668 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.4999 -0.8265 1.1907 6 6 4.1257 -1.9920 0.5614 7 6 4.2797 0.1647 1.7242 8 1 3.8833 0.8069 2.4967 9 6 5.5797 0.3442 1.2719 10 7 5.9917 -0.2797 0.1886 11 14 6.7447 1.4710 2.2007 12 1 6.9135 0.9724 3.5893 13 1 8.0635 1.4906 1.5185 14 1 6.1831 2.8454 2.2331 15 7 2.0183 -0.6907 -1.1961 16 6 2.1471 -0.0184 -2.3571 17 8 1.8577 1.1609 -2.4118 18 6 2.6406 -0.7154 -3.5643 19 7 2.9939 -2.0113 -3.6415 20 6 3.3724 -2.2381 -4.8736 21 7 3.2524 -1.0842 -5.5556 22 6 3.5701 -0.8905 -6.9725 23 7 2.8100 -0.1786 -4.7528 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.7515 -0.1583 2.1370 28 1 1.6052 -1.7198 1.2952 29 1 4.3533 -1.7642 -0.4799 30 1 5.0468 -2.2392 1.0891 31 1 3.4423 -2.8400 0.6067 32 1 6.9003 -0.1545 -0.1272 33 1 2.2490 -1.6318 -1.1525 34 1 3.7177 -3.1809 -5.2712 35 1 2.6836 -1.0909 -7.5744 36 1 3.8947 0.1374 -7.1350 37 1 4.3683 -1.5738 -7.2627 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699450263.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:16 Heat of formation + Delta-G solvation = 58.901977 kcal Electronic energy + Delta-G solvation = -20893.826685 eV Core-core repulsion = 17708.429595 eV Total energy + Delta-G solvation = -3185.397091 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.37688 -40.61949 -38.03941 -35.81051 -35.48145 -33.11308 -32.73844 -31.85411 -28.59183 -27.94302 -27.39069 -25.29596 -23.60926 -23.03717 -21.78832 -21.38115 -19.14430 -18.74608 -17.71960 -17.36492 -17.25148 -16.73671 -16.09982 -15.74781 -15.41401 -15.17683 -14.95765 -14.47511 -13.99052 -13.92554 -13.75204 -13.42077 -13.06838 -12.83332 -12.79265 -12.64659 -12.56480 -12.29061 -12.04117 -11.83458 -11.71973 -11.50011 -11.39279 -11.26532 -10.62177 -10.53590 -9.95282 -8.70380 -7.79119 -5.26697 0.36710 1.19979 1.39389 1.44171 1.46439 1.51981 2.18377 2.42269 2.52325 3.20950 3.34180 3.54487 3.74187 3.92958 4.18725 4.35905 4.41267 4.43888 4.52612 4.67648 4.79513 4.86455 4.87854 4.92032 5.02212 5.18233 5.36991 5.38321 5.40007 5.62410 5.67311 5.72844 5.83831 6.36111 6.50733 7.03610 7.19478 7.23690 7.91843 8.33680 9.22717 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.017560 B = 0.006344 C = 0.005364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.123036 B = 4412.783784 C = 5218.540218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.119 3.881 3 H 0.042 0.958 4 C 0.143 3.857 5 N -0.612 5.612 6 C 0.178 3.822 7 C -0.261 4.261 8 H 0.071 0.929 9 C -0.053 4.053 10 N -0.931 5.931 11 Si 0.963 3.037 12 H -0.273 1.273 13 H -0.298 1.298 14 H -0.283 1.283 15 N -0.668 5.668 16 C 0.605 3.395 17 O -0.577 6.577 18 C 0.121 3.879 19 N -0.508 5.508 20 C 0.203 3.797 21 N -0.302 5.302 22 C 0.075 3.925 23 N -0.290 5.290 24 H 0.085 0.915 25 H 0.038 0.962 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.009 0.991 30 H 0.011 0.989 31 H 0.034 0.966 32 H 0.242 0.758 33 H 0.409 0.591 34 H 0.283 0.717 35 H 0.112 0.888 36 H 0.092 0.908 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.280 -8.459 -12.805 16.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.012 3.988 3 H 0.060 0.940 4 C 0.016 3.984 5 N -0.334 5.334 6 C 0.033 3.967 7 C -0.391 4.391 8 H 0.089 0.911 9 C -0.248 4.248 10 N -0.577 5.577 11 Si 0.792 3.208 12 H -0.199 1.199 13 H -0.225 1.225 14 H -0.209 1.209 15 N -0.318 5.318 16 C 0.388 3.612 17 O -0.456 6.456 18 C -0.158 4.158 19 N -0.234 5.234 20 C -0.092 4.092 21 N -0.098 5.098 22 C -0.063 4.063 23 N -0.131 5.131 24 H 0.104 0.896 25 H 0.057 0.943 26 H 0.095 0.905 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.027 0.973 30 H 0.030 0.970 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.245 0.755 34 H 0.299 0.701 35 H 0.130 0.870 36 H 0.110 0.890 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -7.470 -7.204 -12.746 16.436 hybrid contribution 1.341 0.438 0.002 1.411 sum -6.128 -6.766 -12.744 15.676 Atomic orbital electron populations 1.22035 0.93123 1.03046 1.02234 1.21898 0.94514 0.96622 0.85777 0.93992 1.21409 0.83230 0.99392 0.94377 1.44118 1.00959 1.20488 1.67879 1.20578 0.94144 0.86095 0.95888 1.19483 0.95032 1.10654 1.13939 0.91135 1.25772 1.00670 1.01018 0.97385 1.70247 1.16712 1.47298 1.23470 0.85411 0.78021 0.79058 0.78355 1.19866 1.22473 1.20911 1.45506 1.64106 1.14250 1.07929 1.16659 0.77327 0.84980 0.82212 1.90705 1.53005 1.16454 1.85406 1.23513 1.08210 0.90390 0.93654 1.71194 1.18160 1.13739 1.20309 1.27518 0.99825 0.95050 0.86786 1.47814 1.42878 1.06425 1.12652 1.22756 1.05457 1.06806 0.71309 1.74212 1.17129 1.19733 1.02014 0.89603 0.94311 0.90480 0.90902 0.90475 0.97321 0.97014 0.94790 0.94917 0.75456 0.70142 0.86952 0.88959 0.83898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.47 9.48 71.98 0.68 -3.78 16 2 C 0.12 4.78 2.88 44.99 0.13 4.91 16 3 H 0.04 2.07 7.58 -2.39 -0.02 2.05 16 4 C 0.14 5.58 5.33 86.38 0.46 6.04 16 5 N -0.61 -30.58 2.78 -726.95 -2.02 -32.60 16 6 C 0.18 8.75 7.61 127.77 0.97 9.72 16 7 C -0.26 -14.65 9.66 84.03 0.81 -13.84 16 8 H 0.07 3.84 7.85 -2.91 -0.02 3.81 16 9 C -0.05 -3.11 5.13 84.86 0.44 -2.67 16 10 N -0.93 -57.24 10.66 21.65 0.23 -57.01 16 11 Si 0.96 47.36 29.57 68.60 2.03 49.39 16 12 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 13 H -0.30 -14.84 7.11 99.48 0.71 -14.14 16 14 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 15 N -0.67 -28.25 4.41 -445.39 -1.96 -30.21 16 16 C 0.61 28.42 7.80 86.79 0.68 29.09 16 17 O -0.58 -30.79 16.75 -3.87 -0.06 -30.85 16 18 C 0.12 5.02 7.96 137.13 1.09 6.11 16 19 N -0.51 -17.42 11.09 -193.04 -2.14 -19.56 16 20 C 0.20 4.53 12.62 180.30 2.27 6.80 16 21 N -0.30 -7.23 3.72 -373.46 -1.39 -8.62 16 22 C 0.07 0.73 11.38 127.77 1.45 2.18 16 23 N -0.29 -10.76 12.08 -52.44 -0.63 -11.39 16 24 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 25 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 27 H 0.07 2.68 8.03 -2.39 -0.02 2.66 16 28 H 0.08 2.52 7.86 -2.38 -0.02 2.50 16 29 H 0.01 0.47 6.90 -2.39 -0.02 0.45 16 30 H 0.01 0.61 7.30 -2.39 -0.02 0.59 16 31 H 0.03 1.38 7.84 -2.39 -0.02 1.36 16 32 H 0.24 14.69 8.31 -92.71 -0.77 13.92 16 33 H 0.41 16.40 6.88 -92.71 -0.64 15.76 16 34 H 0.28 2.27 8.06 -2.91 -0.02 2.25 16 35 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 37 H 0.14 0.19 8.14 -2.38 -0.02 0.17 16 Total: -1.00 -86.38 317.67 3.48 -82.91 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 0.44 Total: 13.36 kcal Atomic # 6 Polarization: 35.58 SS G_CDS: 8.99 Total: 44.57 kcal Atomic # 7 Polarization: -151.46 SS G_CDS: -7.92 Total: -159.38 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -0.06 Total: -30.85 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.39 kcal Total: -86.38 3.48 -82.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699450263.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.810 kcal (2) G-P(sol) polarization free energy of solvation -86.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds