Wall clock time and date at job start Mon Mar 30 2020 00:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46562 * 2 1 4 4 C 1.52993 * 109.47573 * 240.00270 * 2 1 3 5 5 N 1.46497 * 109.47396 * 184.99871 * 4 2 1 6 6 C 1.46500 * 119.99972 * 270.00216 * 5 4 2 7 7 C 1.36937 * 119.99969 * 89.99450 * 5 4 2 8 8 H 1.07995 * 120.00294 * 22.03543 * 7 5 4 9 9 C 1.38808 * 120.00127 * 202.02797 * 7 5 4 10 10 N 1.31623 * 120.00114 * 11.43573 * 9 7 5 11 11 Si 1.86800 * 120.00191 * 191.43415 * 9 7 5 12 12 H 1.48506 * 109.47016 * 90.00383 * 11 9 7 13 13 H 1.48497 * 109.47274 * 210.00035 * 11 9 7 14 14 H 1.48500 * 109.47370 * 330.00187 * 11 9 7 15 15 N 1.46500 * 109.46830 * 119.99501 * 2 1 3 16 16 C 1.34774 * 120.00447 * 275.00051 * 15 2 1 17 17 O 1.21279 * 120.00144 * 0.02562 * 16 15 2 18 18 C 1.50698 * 119.99769 * 180.02562 * 16 15 2 19 19 N 1.46508 * 109.47009 * 180.02562 * 18 16 15 20 20 C 1.34424 * 126.82370 * 125.00194 * 19 18 16 21 21 N 1.30832 * 108.07474 * 180.02562 * 20 19 18 22 22 C 1.33241 * 109.83339 * 359.97438 * 21 20 19 23 23 N 1.30716 * 108.94110 * 0.27010 * 22 21 20 24 24 H 1.08994 * 109.47561 * 299.99705 * 1 2 3 25 25 H 1.08996 * 109.46999 * 60.00598 * 1 2 3 26 26 H 1.09001 * 109.46562 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.47059 * 304.99710 * 4 2 1 28 28 H 1.09003 * 109.47118 * 64.99653 * 4 2 1 29 29 H 1.08995 * 109.47472 * 94.04060 * 6 5 4 30 30 H 1.09001 * 109.46831 * 214.04305 * 6 5 4 31 31 H 1.09001 * 109.46632 * 334.03625 * 6 5 4 32 32 H 0.96998 * 120.00006 * 179.97438 * 10 9 7 33 33 H 0.97002 * 119.99175 * 95.00898 * 15 2 1 34 34 H 1.09005 * 109.47218 * 60.00873 * 18 16 15 35 35 H 1.09003 * 109.47788 * 300.00171 * 18 16 15 36 36 H 1.07995 * 125.96288 * 0.02562 * 20 19 18 37 37 H 1.07995 * 125.52727 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 7 3.5001 -0.8262 -1.1905 6 6 4.3344 0.2343 -1.7611 7 6 4.0851 -1.9156 -0.6022 8 1 3.5323 -2.8382 -0.5040 9 6 5.3886 -1.8343 -0.1320 10 7 5.9844 -0.6640 -0.0434 11 14 6.2972 -3.3856 0.3750 12 1 7.0186 -3.9424 -0.7976 13 1 7.2720 -3.0604 1.4470 14 1 5.3236 -4.3875 0.8786 15 7 2.0183 -0.6905 1.1962 16 6 2.1470 -0.0182 2.3572 17 8 1.8582 1.1585 2.4118 18 6 2.6498 -0.7285 3.5875 19 7 2.6984 0.2127 4.7092 20 6 2.1086 0.0681 5.9084 21 7 2.3902 1.1230 6.6292 22 6 3.1545 1.9590 5.9275 23 7 3.3660 1.4479 4.7432 24 1 -0.3634 0.5137 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 1.6055 -1.7198 -1.2951 28 1 1.7517 -0.1582 -2.1369 29 1 4.5996 0.9475 -0.9807 30 1 5.2420 -0.2022 -2.1781 31 1 3.7823 0.7464 -2.5491 32 1 6.8951 -0.6071 0.2855 33 1 2.2491 -1.6317 1.1526 34 1 3.6492 -1.1202 3.3980 35 1 1.9777 -1.5508 3.8326 36 1 1.5073 -0.7723 6.2222 37 1 3.5340 2.9071 6.2788 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699471697.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:25 Heat of formation + Delta-G solvation = 85.508695 kcal Electronic energy + Delta-G solvation = -20956.091378 eV Core-core repulsion = 17771.848041 eV Total energy + Delta-G solvation = -3184.243337 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.84160 -39.19220 -36.42343 -34.10968 -33.69198 -31.49082 -30.97760 -30.24771 -27.58606 -26.21976 -25.67618 -22.60064 -21.76845 -21.66776 -20.39046 -19.75753 -17.19950 -17.14535 -16.56939 -15.65772 -15.30751 -14.98027 -14.62470 -14.44403 -13.98653 -13.78312 -13.28144 -13.23205 -12.89678 -12.52963 -12.25406 -11.96744 -11.56070 -11.45207 -11.34710 -10.94176 -10.77239 -10.46980 -10.30754 -10.12178 -9.93269 -9.90818 -9.81886 -9.55311 -9.12241 -8.65155 -8.38590 -6.86067 -5.81034 -3.28200 1.84927 2.40658 3.06495 3.17383 3.25552 3.32841 3.36746 3.72973 4.37456 4.42624 4.63717 4.99733 5.09750 5.26617 5.29279 5.42750 5.52682 5.59694 5.80569 5.91872 6.10235 6.17736 6.37093 6.38746 6.44234 6.64773 6.70368 6.82453 6.91169 7.16509 7.34027 7.62831 7.75345 8.12282 8.26765 8.28779 8.77789 9.12457 9.76763 10.27196 11.22539 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.016276 B = 0.006905 C = 0.005528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.897638 B = 4054.145741 C = 5063.791989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.121 3.879 3 H 0.076 0.924 4 C 0.143 3.857 5 N -0.599 5.599 6 C 0.164 3.836 7 C -0.260 4.260 8 H 0.067 0.933 9 C 0.007 3.993 10 N -0.896 5.896 11 Si 0.897 3.103 12 H -0.287 1.287 13 H -0.292 1.292 14 H -0.279 1.279 15 N -0.684 5.684 16 C 0.506 3.494 17 O -0.533 6.533 18 C 0.107 3.893 19 N -0.359 5.359 20 C 0.245 3.755 21 N -0.551 5.551 22 C 0.180 3.820 23 N -0.276 5.276 24 H 0.050 0.950 25 H 0.059 0.941 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.028 0.972 30 H 0.045 0.955 31 H -0.004 1.004 32 H 0.253 0.747 33 H 0.404 0.596 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.216 0.784 37 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.942 -2.669 5.588 10.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.013 3.987 3 H 0.095 0.905 4 C 0.014 3.986 5 N -0.321 5.321 6 C 0.019 3.981 7 C -0.390 4.390 8 H 0.085 0.915 9 C -0.193 4.193 10 N -0.540 5.540 11 Si 0.727 3.273 12 H -0.214 1.214 13 H -0.218 1.218 14 H -0.205 1.205 15 N -0.334 5.334 16 C 0.289 3.711 17 O -0.410 6.410 18 C -0.019 4.019 19 N -0.150 5.150 20 C -0.052 4.052 21 N -0.278 5.278 22 C -0.123 4.123 23 N -0.103 5.103 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.046 0.954 30 H 0.064 0.936 31 H 0.014 0.986 32 H 0.064 0.936 33 H 0.240 0.760 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.232 0.768 37 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -8.622 -1.423 5.341 10.242 hybrid contribution 0.726 -1.466 0.275 1.659 sum -7.896 -2.889 5.616 10.111 Atomic orbital electron populations 1.22151 0.96851 1.01230 1.01573 1.21846 0.91717 0.98447 0.86713 0.90544 1.21184 0.85985 0.97873 0.93553 1.43890 0.98880 1.22635 1.66669 1.20803 0.92996 0.90453 0.93846 1.19069 0.97061 0.89506 1.33338 0.91539 1.25027 0.98613 0.96125 0.99544 1.70078 1.13214 1.21563 1.49107 0.86400 0.80020 0.82788 0.78110 1.21441 1.21800 1.20485 1.45615 1.65188 1.14326 1.08307 1.20083 0.78706 0.87613 0.84733 1.90722 1.50076 1.15300 1.84907 1.21673 1.05842 0.89830 0.84556 1.49995 1.37741 1.15439 1.11841 1.25962 0.97251 0.99024 0.82964 1.70463 1.19933 1.03581 1.33846 1.25976 0.97258 1.00685 0.88357 1.78325 1.17863 0.93766 1.20336 0.93102 0.92191 0.92955 0.93292 0.92934 0.95387 0.93629 0.98593 0.93633 0.75991 0.85930 0.85827 0.76764 0.77018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 9.48 37.16 0.35 -1.93 16 2 C 0.12 2.14 2.88 -67.93 -0.20 1.95 16 3 H 0.08 1.63 7.58 -51.93 -0.39 1.24 16 4 C 0.14 2.61 5.36 -4.05 -0.02 2.59 16 5 N -0.60 -13.72 2.82 -181.12 -0.51 -14.23 16 6 C 0.16 3.93 9.01 59.85 0.54 4.47 16 7 C -0.26 -6.28 8.02 -15.06 -0.12 -6.40 16 8 H 0.07 1.53 7.84 -52.49 -0.41 1.11 16 9 C 0.01 0.17 5.13 -17.43 -0.09 0.08 16 10 N -0.90 -24.82 10.57 55.49 0.59 -24.23 16 11 Si 0.90 20.09 29.57 -169.99 -5.03 15.06 16 12 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 15 N -0.68 -11.98 4.49 -53.81 -0.24 -12.22 16 16 C 0.51 9.31 7.83 -10.99 -0.09 9.23 16 17 O -0.53 -12.00 15.39 5.56 0.09 -11.91 16 18 C 0.11 1.53 7.03 -5.19 -0.04 1.50 16 19 N -0.36 -5.73 3.41 -63.81 -0.22 -5.95 16 20 C 0.24 3.22 12.63 -90.66 -1.14 2.08 16 21 N -0.55 -8.43 11.19 -15.83 -0.18 -8.61 16 22 C 0.18 2.87 13.03 -91.81 -1.20 1.68 16 23 N -0.28 -5.24 11.80 29.29 0.35 -4.90 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.83 8.03 -51.92 -0.42 0.42 16 28 H 0.05 0.89 7.86 -51.93 -0.41 0.48 16 29 H 0.03 0.75 7.44 -51.93 -0.39 0.37 16 30 H 0.04 1.18 7.16 -51.93 -0.37 0.80 16 31 H 0.00 -0.10 7.85 -51.93 -0.41 -0.50 16 32 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.40 6.68 7.40 -40.82 -0.30 6.38 16 34 H 0.12 1.83 8.14 -51.93 -0.42 1.41 16 35 H 0.12 1.10 8.09 -51.93 -0.42 0.68 16 36 H 0.22 1.64 8.06 -52.49 -0.42 1.21 16 37 H 0.21 2.57 8.06 -52.49 -0.42 2.15 16 LS Contribution 317.20 15.07 4.78 4.78 Total: -1.00 -34.16 317.20 -7.56 -41.73 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -5.19 Total: 5.25 kcal Atomic # 6 Polarization: 17.24 SS G_CDS: -2.00 Total: 15.24 kcal Atomic # 7 Polarization: -69.93 SS G_CDS: -0.21 Total: -70.15 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.09 Total: -11.91 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.03 Total: 15.06 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.16 -7.56 -41.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699471697.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.234 kcal (2) G-P(sol) polarization free energy of solvation -34.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds