Wall clock time and date at job start Mon Mar 30 2020 00:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46562 * 2 1 4 4 C 1.52993 * 109.47573 * 240.00270 * 2 1 3 5 5 N 1.46497 * 109.47396 * 184.99871 * 4 2 1 6 6 C 1.46500 * 119.99972 * 270.00216 * 5 4 2 7 7 C 1.36937 * 119.99969 * 89.99450 * 5 4 2 8 8 H 1.07995 * 120.00294 * 22.03543 * 7 5 4 9 9 C 1.38808 * 120.00127 * 202.02797 * 7 5 4 10 10 N 1.31623 * 120.00114 * 11.43573 * 9 7 5 11 11 Si 1.86800 * 120.00191 * 191.43415 * 9 7 5 12 12 H 1.48506 * 109.47016 * 90.00383 * 11 9 7 13 13 H 1.48497 * 109.47274 * 210.00035 * 11 9 7 14 14 H 1.48500 * 109.47370 * 330.00187 * 11 9 7 15 15 N 1.46500 * 109.46830 * 119.99501 * 2 1 3 16 16 C 1.34774 * 120.00447 * 275.00051 * 15 2 1 17 17 O 1.21279 * 120.00144 * 0.02562 * 16 15 2 18 18 C 1.50698 * 119.99769 * 180.02562 * 16 15 2 19 19 N 1.46508 * 109.47009 * 180.02562 * 18 16 15 20 20 C 1.34424 * 126.82370 * 125.00194 * 19 18 16 21 21 N 1.30832 * 108.07474 * 180.02562 * 20 19 18 22 22 C 1.33241 * 109.83339 * 359.97438 * 21 20 19 23 23 N 1.30716 * 108.94110 * 0.27010 * 22 21 20 24 24 H 1.08994 * 109.47561 * 299.99705 * 1 2 3 25 25 H 1.08996 * 109.46999 * 60.00598 * 1 2 3 26 26 H 1.09001 * 109.46562 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.47059 * 304.99710 * 4 2 1 28 28 H 1.09003 * 109.47118 * 64.99653 * 4 2 1 29 29 H 1.08995 * 109.47472 * 94.04060 * 6 5 4 30 30 H 1.09001 * 109.46831 * 214.04305 * 6 5 4 31 31 H 1.09001 * 109.46632 * 334.03625 * 6 5 4 32 32 H 0.96998 * 120.00006 * 179.97438 * 10 9 7 33 33 H 0.97002 * 119.99175 * 95.00898 * 15 2 1 34 34 H 1.09005 * 109.47218 * 60.00873 * 18 16 15 35 35 H 1.09003 * 109.47788 * 300.00171 * 18 16 15 36 36 H 1.07995 * 125.96288 * 0.02562 * 20 19 18 37 37 H 1.07995 * 125.52727 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 7 3.5001 -0.8262 -1.1905 6 6 4.3344 0.2343 -1.7611 7 6 4.0851 -1.9156 -0.6022 8 1 3.5323 -2.8382 -0.5040 9 6 5.3886 -1.8343 -0.1320 10 7 5.9844 -0.6640 -0.0434 11 14 6.2972 -3.3856 0.3750 12 1 7.0186 -3.9424 -0.7976 13 1 7.2720 -3.0604 1.4470 14 1 5.3236 -4.3875 0.8786 15 7 2.0183 -0.6905 1.1962 16 6 2.1470 -0.0182 2.3572 17 8 1.8582 1.1585 2.4118 18 6 2.6498 -0.7285 3.5875 19 7 2.6984 0.2127 4.7092 20 6 2.1086 0.0681 5.9084 21 7 2.3902 1.1230 6.6292 22 6 3.1545 1.9590 5.9275 23 7 3.3660 1.4479 4.7432 24 1 -0.3634 0.5137 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 1.6055 -1.7198 -1.2951 28 1 1.7517 -0.1582 -2.1369 29 1 4.5996 0.9475 -0.9807 30 1 5.2420 -0.2022 -2.1781 31 1 3.7823 0.7464 -2.5491 32 1 6.8951 -0.6071 0.2855 33 1 2.2491 -1.6317 1.1526 34 1 3.6492 -1.1202 3.3980 35 1 1.9777 -1.5508 3.8326 36 1 1.5073 -0.7723 6.2222 37 1 3.5340 2.9071 6.2788 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699471697.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:24 Heat of formation + Delta-G solvation = 62.694778 kcal Electronic energy + Delta-G solvation = -20957.080663 eV Core-core repulsion = 17771.848041 eV Total energy + Delta-G solvation = -3185.232622 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.97975 -40.63459 -38.05682 -35.73891 -34.93342 -33.19360 -32.16720 -31.76952 -28.76360 -28.04214 -27.35652 -23.98147 -23.21730 -22.86124 -21.83391 -21.21558 -18.81059 -18.32193 -18.15642 -17.01019 -16.74880 -16.60641 -15.87310 -15.75463 -15.50988 -15.05448 -14.97976 -14.63591 -14.37719 -13.88283 -13.78191 -13.28599 -13.08503 -12.87140 -12.74610 -12.71733 -12.49486 -12.16446 -11.94202 -11.93129 -11.66278 -11.22624 -10.99455 -10.76713 -10.59800 -10.45374 -9.84174 -8.76682 -7.75160 -5.23565 0.74367 1.33610 1.48529 1.53165 1.60115 1.68178 2.03868 2.42709 2.54826 3.40401 3.51950 3.60593 3.72224 3.83691 4.05784 4.17830 4.18878 4.44247 4.45719 4.55034 4.76897 4.83923 4.91811 5.01628 5.18530 5.23858 5.32740 5.40696 5.50786 5.67603 5.73572 5.75473 5.91925 6.35632 6.73750 7.13344 7.17715 7.40389 7.90936 8.38444 9.28333 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.016276 B = 0.006905 C = 0.005528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.897638 B = 4054.145741 C = 5063.791989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.124 3.876 3 H 0.030 0.970 4 C 0.142 3.858 5 N -0.612 5.612 6 C 0.179 3.821 7 C -0.244 4.244 8 H 0.089 0.911 9 C -0.050 4.050 10 N -0.938 5.938 11 Si 0.956 3.044 12 H -0.298 1.298 13 H -0.310 1.310 14 H -0.248 1.248 15 N -0.680 5.680 16 C 0.496 3.504 17 O -0.582 6.582 18 C 0.112 3.888 19 N -0.372 5.372 20 C 0.263 3.737 21 N -0.572 5.572 22 C 0.181 3.819 23 N -0.345 5.345 24 H 0.036 0.964 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.069 0.931 29 H -0.012 1.012 30 H 0.019 0.981 31 H 0.024 0.976 32 H 0.240 0.760 33 H 0.411 0.589 34 H 0.114 0.886 35 H 0.187 0.813 36 H 0.272 0.728 37 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.310 -5.412 6.066 13.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.017 3.983 3 H 0.048 0.952 4 C 0.015 3.985 5 N -0.335 5.335 6 C 0.034 3.966 7 C -0.374 4.374 8 H 0.106 0.894 9 C -0.245 4.245 10 N -0.585 5.585 11 Si 0.786 3.214 12 H -0.226 1.226 13 H -0.238 1.238 14 H -0.172 1.172 15 N -0.331 5.331 16 C 0.281 3.719 17 O -0.462 6.462 18 C -0.013 4.013 19 N -0.163 5.163 20 C -0.033 4.033 21 N -0.301 5.301 22 C -0.121 4.121 23 N -0.172 5.172 24 H 0.055 0.945 25 H 0.095 0.905 26 H 0.097 0.903 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.006 0.994 30 H 0.038 0.962 31 H 0.043 0.957 32 H 0.049 0.951 33 H 0.248 0.752 34 H 0.131 0.869 35 H 0.204 0.796 36 H 0.288 0.712 37 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -11.044 -4.221 5.803 13.170 hybrid contribution 1.372 -0.601 0.083 1.500 sum -9.672 -4.822 5.886 12.306 Atomic orbital electron populations 1.22001 0.93598 1.02954 1.01728 1.21669 0.94110 0.95833 0.86736 0.95151 1.21392 0.83132 0.99644 0.94301 1.44142 1.00887 1.21978 1.66447 1.20468 0.92842 0.90072 0.93225 1.19511 0.96783 0.90376 1.30773 0.89351 1.25719 0.99861 0.98192 1.00767 1.70299 1.12750 1.23826 1.51617 0.85429 0.78898 0.80427 0.76673 1.22587 1.23794 1.17207 1.45633 1.64786 1.14512 1.08153 1.20822 0.77800 0.87231 0.86004 1.90699 1.52218 1.17504 1.85807 1.21851 1.06522 0.90333 0.82623 1.50067 1.38280 1.14965 1.13021 1.27084 0.95438 0.99390 0.81371 1.70509 1.20640 1.04442 1.34460 1.26495 0.96549 1.01395 0.87687 1.78239 1.20546 0.96134 1.22248 0.94525 0.90526 0.90299 0.90621 0.91295 0.99409 0.96210 0.95725 0.95094 0.75183 0.86851 0.79594 0.71216 0.74848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 9.48 71.98 0.68 -3.07 16 2 C 0.12 4.27 2.88 44.99 0.13 4.40 16 3 H 0.03 1.33 7.58 -2.39 -0.02 1.31 16 4 C 0.14 4.84 5.36 86.38 0.46 5.30 16 5 N -0.61 -27.46 2.82 -726.96 -2.05 -29.50 16 6 C 0.18 8.79 9.01 127.77 1.15 9.94 16 7 C -0.24 -11.40 8.02 84.03 0.67 -10.72 16 8 H 0.09 3.71 7.84 -2.91 -0.02 3.69 16 9 C -0.05 -2.56 5.13 84.86 0.44 -2.13 16 10 N -0.94 -53.84 10.57 21.65 0.23 -53.61 16 11 Si 0.96 41.00 29.57 68.60 2.03 43.03 16 12 H -0.30 -13.20 7.11 99.48 0.71 -12.49 16 13 H -0.31 -14.16 7.11 99.48 0.71 -13.45 16 14 H -0.25 -9.30 7.11 99.48 0.71 -8.59 16 15 N -0.68 -22.87 4.49 -442.54 -1.99 -24.85 16 16 C 0.50 18.03 7.83 87.66 0.69 18.72 16 17 O -0.58 -26.82 15.39 -3.03 -0.05 -26.87 16 18 C 0.11 2.98 7.03 85.63 0.60 3.59 16 19 N -0.37 -11.42 3.41 -355.79 -1.21 -12.63 16 20 C 0.26 6.19 12.63 180.36 2.28 8.46 16 21 N -0.57 -16.68 11.19 -204.01 -2.28 -18.96 16 22 C 0.18 5.79 13.03 180.76 2.36 8.15 16 23 N -0.34 -13.31 11.80 -61.25 -0.72 -14.04 16 24 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.08 2.23 8.03 -2.38 -0.02 2.21 16 28 H 0.07 2.14 7.86 -2.39 -0.02 2.12 16 29 H -0.01 -0.71 7.44 -2.39 -0.02 -0.73 16 30 H 0.02 1.03 7.16 -2.39 -0.02 1.01 16 31 H 0.02 1.03 7.85 -2.39 -0.02 1.01 16 32 H 0.24 13.86 8.31 -92.71 -0.77 13.08 16 33 H 0.41 12.47 7.40 -92.71 -0.69 11.79 16 34 H 0.11 3.27 8.14 -2.38 -0.02 3.25 16 35 H 0.19 2.43 8.09 -2.39 -0.02 2.41 16 36 H 0.27 2.69 8.06 -2.91 -0.02 2.67 16 37 H 0.24 5.74 8.06 -2.91 -0.02 5.72 16 Total: -1.00 -79.18 317.20 3.80 -75.38 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: 0.39 Total: 19.42 kcal Atomic # 6 Polarization: 33.18 SS G_CDS: 9.46 Total: 42.64 kcal Atomic # 7 Polarization: -145.57 SS G_CDS: -8.03 Total: -153.59 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -0.05 Total: -26.87 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Total: -79.18 3.80 -75.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699471697.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.071 kcal (2) G-P(sol) polarization free energy of solvation -79.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds