Wall clock time and date at job start Mon Mar 30 2020 00:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47469 * 2 1 4 4 C 1.53001 * 109.47110 * 120.00359 * 2 1 3 5 5 N 1.46503 * 109.47280 * 174.99925 * 4 2 1 6 6 C 1.46496 * 119.99978 * 270.00062 * 5 4 2 7 7 C 1.36939 * 119.99675 * 89.99526 * 5 4 2 8 8 H 1.07992 * 120.00364 * 23.62386 * 7 5 4 9 9 C 1.38819 * 119.99849 * 203.61597 * 7 5 4 10 10 N 1.31616 * 119.99776 * 11.31169 * 9 7 5 11 11 Si 1.86797 * 120.00050 * 191.31146 * 9 7 5 12 12 H 1.48501 * 109.46872 * 90.00077 * 11 9 7 13 13 H 1.48493 * 109.46972 * 209.99956 * 11 9 7 14 14 H 1.48502 * 109.47078 * 330.00304 * 11 9 7 15 15 N 1.46504 * 109.47106 * 239.99911 * 2 1 3 16 16 C 1.34778 * 120.00027 * 85.00350 * 15 2 1 17 17 O 1.21279 * 119.99644 * 359.97438 * 16 15 2 18 18 C 1.50692 * 120.00101 * 179.97438 * 16 15 2 19 19 N 1.46499 * 109.47288 * 179.97438 * 18 16 15 20 20 C 1.34431 * 126.82457 * 124.99908 * 19 18 16 21 21 N 1.30835 * 108.07913 * 179.97438 * 20 19 18 22 22 C 1.33241 * 109.82728 * 0.02562 * 21 20 19 23 23 N 1.30710 * 108.94916 * 359.75379 * 22 21 20 24 24 H 1.09001 * 109.47469 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47329 * 299.99796 * 1 2 3 26 26 H 1.09003 * 109.46936 * 59.99751 * 1 2 3 27 27 H 1.09004 * 109.46782 * 294.99645 * 4 2 1 28 28 H 1.08996 * 109.47593 * 54.99642 * 4 2 1 29 29 H 1.08997 * 109.47640 * 94.53340 * 6 5 4 30 30 H 1.09001 * 109.46779 * 214.53631 * 6 5 4 31 31 H 1.09008 * 109.46879 * 334.52914 * 6 5 4 32 32 H 0.96996 * 119.99996 * 180.02562 * 10 9 7 33 33 H 0.96999 * 120.00332 * 264.99822 * 15 2 1 34 34 H 1.09009 * 109.47257 * 60.00314 * 18 16 15 35 35 H 1.09003 * 109.47322 * 299.99968 * 18 16 15 36 36 H 1.08001 * 125.96020 * 0.02562 * 20 19 18 37 37 H 1.07998 * 125.52225 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 3.5000 -0.8265 1.1906 6 6 4.1257 -1.9920 0.5611 7 6 4.2798 0.1648 1.7240 8 1 3.8834 0.8069 2.4965 9 6 5.5799 0.3442 1.2718 10 7 5.9918 -0.2796 0.1885 11 14 6.7448 1.4708 2.2009 12 1 7.4750 0.6878 3.2300 13 1 7.7175 2.0687 1.2514 14 1 5.9680 2.5513 2.8599 15 7 2.0183 -0.6906 -1.1962 16 6 2.1471 -0.0183 -2.3572 17 8 1.8582 1.1583 -2.4117 18 6 2.6499 -0.7285 -3.5874 19 7 2.6986 0.2126 -4.7091 20 6 3.7643 0.4950 -5.4782 21 7 3.3994 1.3825 -6.3677 22 6 2.1140 1.6900 -6.1982 23 7 1.6398 0.9955 -5.1976 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.7516 -0.1584 2.1370 28 1 1.6053 -1.7198 1.2952 29 1 4.3532 -1.7643 -0.4802 30 1 5.0470 -2.2389 1.0887 31 1 3.4425 -2.8401 0.6068 32 1 6.9004 -0.1546 -0.1273 33 1 2.2490 -1.6318 -1.1527 34 1 1.9776 -1.5508 -3.8326 35 1 3.6492 -1.1204 -3.3978 36 1 4.7496 0.0639 -5.3798 37 1 1.5539 2.3957 -6.7937 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699471698.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:27 Heat of formation + Delta-G solvation = 85.114935 kcal Electronic energy + Delta-G solvation = -20836.163381 eV Core-core repulsion = 17651.902969 eV Total energy + Delta-G solvation = -3184.260411 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.88242 -39.29269 -36.47435 -34.15093 -33.76207 -31.43804 -31.01704 -30.37529 -27.67371 -26.26460 -25.66377 -22.65998 -21.80943 -21.64617 -20.40616 -19.94126 -17.27999 -17.06053 -16.81658 -15.54881 -15.47073 -14.90014 -14.80373 -14.45302 -13.91046 -13.79534 -13.45416 -13.26396 -12.93750 -12.65087 -12.20688 -11.95084 -11.67792 -11.48893 -11.16896 -10.90091 -10.84704 -10.61880 -10.29567 -10.05974 -9.97726 -9.92371 -9.88267 -9.59117 -9.19394 -8.68127 -8.46513 -6.83554 -5.81786 -3.27242 1.78136 2.35719 3.00934 3.13740 3.34461 3.41801 3.42373 3.57052 4.44681 4.45844 4.66081 4.93719 5.01604 5.06976 5.28846 5.40765 5.45161 5.63053 5.79267 5.93773 6.03948 6.17963 6.32622 6.42064 6.47066 6.54678 6.58970 6.80534 6.86381 7.07365 7.21612 7.53272 7.73748 7.95625 8.22314 8.31382 8.66179 9.15441 9.77114 10.24939 11.23795 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.017695 B = 0.006069 C = 0.005067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.978065 B = 4612.598454 C = 5524.836226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.120 3.880 3 H 0.085 0.915 4 C 0.143 3.857 5 N -0.598 5.598 6 C 0.162 3.838 7 C -0.255 4.255 8 H 0.068 0.932 9 C 0.006 3.994 10 N -0.907 5.907 11 Si 0.904 3.096 12 H -0.288 1.288 13 H -0.291 1.291 14 H -0.280 1.280 15 N -0.695 5.695 16 C 0.506 3.494 17 O -0.524 6.524 18 C 0.109 3.891 19 N -0.362 5.362 20 C 0.257 3.743 21 N -0.550 5.550 22 C 0.185 3.815 23 N -0.292 5.292 24 H 0.049 0.951 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.042 0.958 29 H 0.029 0.971 30 H 0.043 0.957 31 H -0.005 1.005 32 H 0.251 0.749 33 H 0.395 0.605 34 H 0.113 0.887 35 H 0.133 0.867 36 H 0.219 0.781 37 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.106 -5.468 -6.908 11.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.013 3.987 3 H 0.103 0.897 4 C 0.015 3.985 5 N -0.320 5.320 6 C 0.017 3.983 7 C -0.385 4.385 8 H 0.086 0.914 9 C -0.193 4.193 10 N -0.552 5.552 11 Si 0.735 3.265 12 H -0.215 1.215 13 H -0.218 1.218 14 H -0.205 1.205 15 N -0.346 5.346 16 C 0.289 3.711 17 O -0.399 6.399 18 C -0.017 4.017 19 N -0.152 5.152 20 C -0.040 4.040 21 N -0.278 5.278 22 C -0.118 4.118 23 N -0.119 5.119 24 H 0.068 0.932 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.061 0.939 29 H 0.048 0.952 30 H 0.062 0.938 31 H 0.014 0.986 32 H 0.061 0.939 33 H 0.229 0.771 34 H 0.130 0.870 35 H 0.151 0.849 36 H 0.235 0.765 37 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -7.669 -4.488 -6.927 11.267 hybrid contribution 1.154 0.092 0.574 1.292 sum -6.515 -4.396 -6.354 10.107 Atomic orbital electron populations 1.22150 0.96763 1.01118 1.01802 1.21872 0.91708 0.99106 0.86025 0.89711 1.21207 0.85754 0.97263 0.94325 1.43895 0.99070 1.20871 1.68158 1.20841 0.94670 0.85065 0.97704 1.19190 0.94574 1.10485 1.14225 0.91435 1.24997 0.98868 0.99041 0.96364 1.70004 1.17197 1.45870 1.22153 0.86253 0.80902 0.80438 0.78941 1.21494 1.21762 1.20507 1.45687 1.66229 1.13643 1.09020 1.20112 0.78868 0.87725 0.84442 1.90747 1.49282 1.15372 1.84489 1.21658 1.05932 0.90399 0.83749 1.49945 1.08051 1.32414 1.24827 1.26073 0.94816 0.94697 0.88374 1.70505 1.13626 1.16908 1.26732 1.25937 0.90683 0.99789 0.95359 1.78129 1.10937 1.09297 1.13499 0.93151 0.92055 0.92918 0.92228 0.93922 0.95246 0.93810 0.98617 0.93874 0.77050 0.86961 0.84922 0.76495 0.77022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 9.48 37.15 0.35 -1.99 16 2 C 0.12 2.15 2.88 -67.93 -0.20 1.96 16 3 H 0.08 1.89 7.58 -51.93 -0.39 1.50 16 4 C 0.14 2.62 5.33 -4.04 -0.02 2.60 16 5 N -0.60 -13.61 2.78 -181.12 -0.50 -14.12 16 6 C 0.16 3.47 7.61 59.84 0.46 3.92 16 7 C -0.26 -6.69 9.66 -15.06 -0.15 -6.83 16 8 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 9 C 0.01 0.15 5.13 -17.43 -0.09 0.06 16 10 N -0.91 -24.79 10.66 55.49 0.59 -24.20 16 11 Si 0.90 21.64 29.57 -169.99 -5.03 16.61 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 15 N -0.70 -11.52 4.41 -53.81 -0.24 -11.75 16 16 C 0.51 8.98 7.83 -10.99 -0.09 8.89 16 17 O -0.52 -11.76 15.41 5.56 0.09 -11.67 16 18 C 0.11 1.43 7.03 -5.20 -0.04 1.39 16 19 N -0.36 -5.52 3.40 -63.81 -0.22 -5.74 16 20 C 0.26 3.56 12.63 -90.65 -1.14 2.42 16 21 N -0.55 -8.50 11.19 -15.83 -0.18 -8.68 16 22 C 0.19 2.78 13.03 -91.81 -1.20 1.59 16 23 N -0.29 -4.98 11.83 29.29 0.35 -4.63 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.06 1.09 8.03 -51.93 -0.42 0.67 16 28 H 0.04 0.68 7.86 -51.93 -0.41 0.27 16 29 H 0.03 0.65 6.90 -51.93 -0.36 0.29 16 30 H 0.04 1.05 7.30 -51.93 -0.38 0.68 16 31 H 0.00 -0.08 7.84 -51.92 -0.41 -0.49 16 32 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 33 H 0.40 5.68 7.17 -40.82 -0.29 5.39 16 34 H 0.11 1.10 8.14 -51.92 -0.42 0.68 16 35 H 0.13 1.43 8.09 -51.93 -0.42 1.01 16 36 H 0.22 2.07 8.06 -52.49 -0.42 1.65 16 37 H 0.21 2.33 8.06 -52.49 -0.42 1.91 16 LS Contribution 316.80 15.07 4.77 4.77 Total: -1.00 -34.78 316.80 -7.63 -42.42 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -5.16 Total: 3.00 kcal Atomic # 6 Polarization: 16.11 SS G_CDS: -2.11 Total: 14.00 kcal Atomic # 7 Polarization: -68.93 SS G_CDS: -0.20 Total: -69.13 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.09 Total: -11.67 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.78 -7.63 -42.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699471698.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.530 kcal (2) G-P(sol) polarization free energy of solvation -34.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds