Wall clock time and date at job start Mon Mar 30 2020 00:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47469 * 2 1 4 4 C 1.53001 * 109.47110 * 120.00359 * 2 1 3 5 5 N 1.46503 * 109.47280 * 174.99925 * 4 2 1 6 6 C 1.46496 * 119.99978 * 270.00062 * 5 4 2 7 7 C 1.36939 * 119.99675 * 89.99526 * 5 4 2 8 8 H 1.07992 * 120.00364 * 23.62386 * 7 5 4 9 9 C 1.38819 * 119.99849 * 203.61597 * 7 5 4 10 10 N 1.31616 * 119.99776 * 11.31169 * 9 7 5 11 11 Si 1.86797 * 120.00050 * 191.31146 * 9 7 5 12 12 H 1.48501 * 109.46872 * 90.00077 * 11 9 7 13 13 H 1.48493 * 109.46972 * 209.99956 * 11 9 7 14 14 H 1.48502 * 109.47078 * 330.00304 * 11 9 7 15 15 N 1.46504 * 109.47106 * 239.99911 * 2 1 3 16 16 C 1.34778 * 120.00027 * 85.00350 * 15 2 1 17 17 O 1.21279 * 119.99644 * 359.97438 * 16 15 2 18 18 C 1.50692 * 120.00101 * 179.97438 * 16 15 2 19 19 N 1.46499 * 109.47288 * 179.97438 * 18 16 15 20 20 C 1.34431 * 126.82457 * 124.99908 * 19 18 16 21 21 N 1.30835 * 108.07913 * 179.97438 * 20 19 18 22 22 C 1.33241 * 109.82728 * 0.02562 * 21 20 19 23 23 N 1.30710 * 108.94916 * 359.75379 * 22 21 20 24 24 H 1.09001 * 109.47469 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47329 * 299.99796 * 1 2 3 26 26 H 1.09003 * 109.46936 * 59.99751 * 1 2 3 27 27 H 1.09004 * 109.46782 * 294.99645 * 4 2 1 28 28 H 1.08996 * 109.47593 * 54.99642 * 4 2 1 29 29 H 1.08997 * 109.47640 * 94.53340 * 6 5 4 30 30 H 1.09001 * 109.46779 * 214.53631 * 6 5 4 31 31 H 1.09008 * 109.46879 * 334.52914 * 6 5 4 32 32 H 0.96996 * 119.99996 * 180.02562 * 10 9 7 33 33 H 0.96999 * 120.00332 * 264.99822 * 15 2 1 34 34 H 1.09009 * 109.47257 * 60.00314 * 18 16 15 35 35 H 1.09003 * 109.47322 * 299.99968 * 18 16 15 36 36 H 1.08001 * 125.96020 * 0.02562 * 20 19 18 37 37 H 1.07998 * 125.52225 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 3.5000 -0.8265 1.1906 6 6 4.1257 -1.9920 0.5611 7 6 4.2798 0.1648 1.7240 8 1 3.8834 0.8069 2.4965 9 6 5.5799 0.3442 1.2718 10 7 5.9918 -0.2796 0.1885 11 14 6.7448 1.4708 2.2009 12 1 7.4750 0.6878 3.2300 13 1 7.7175 2.0687 1.2514 14 1 5.9680 2.5513 2.8599 15 7 2.0183 -0.6906 -1.1962 16 6 2.1471 -0.0183 -2.3572 17 8 1.8582 1.1583 -2.4117 18 6 2.6499 -0.7285 -3.5874 19 7 2.6986 0.2126 -4.7091 20 6 3.7643 0.4950 -5.4782 21 7 3.3994 1.3825 -6.3677 22 6 2.1140 1.6900 -6.1982 23 7 1.6398 0.9955 -5.1976 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.7516 -0.1584 2.1370 28 1 1.6053 -1.7198 1.2952 29 1 4.3532 -1.7643 -0.4802 30 1 5.0470 -2.2389 1.0887 31 1 3.4425 -2.8401 0.6068 32 1 6.9004 -0.1546 -0.1273 33 1 2.2490 -1.6318 -1.1527 34 1 1.9776 -1.5508 -3.8326 35 1 3.6492 -1.1204 -3.3978 36 1 4.7496 0.0639 -5.3798 37 1 1.5539 2.3957 -6.7937 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699471698.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:27 Heat of formation + Delta-G solvation = 62.315569 kcal Electronic energy + Delta-G solvation = -20837.152035 eV Core-core repulsion = 17651.902969 eV Total energy + Delta-G solvation = -3185.249066 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.98569 -40.69366 -38.07316 -35.78013 -34.95225 -33.13597 -32.17162 -31.90237 -28.80752 -27.93167 -27.39177 -24.01335 -23.14345 -22.88896 -21.84883 -21.33519 -18.80129 -18.37403 -18.29249 -16.97682 -16.82777 -16.52115 -16.08220 -15.67404 -15.48771 -15.15264 -14.92596 -14.75674 -14.37516 -13.88085 -13.73977 -13.32478 -13.08003 -12.85605 -12.78090 -12.64434 -12.55602 -12.28352 -12.02935 -11.83515 -11.70776 -11.26763 -11.02682 -10.75213 -10.63352 -10.45424 -9.93611 -8.70027 -7.82218 -5.26930 0.68521 1.32757 1.43001 1.45599 1.51317 1.67934 2.03009 2.32134 2.50795 3.31912 3.52003 3.58647 3.72091 3.83601 4.08979 4.11297 4.19850 4.39930 4.43427 4.54320 4.76475 4.87730 4.93032 5.01396 5.18603 5.24326 5.37550 5.42391 5.50471 5.67060 5.69533 5.82671 5.85177 6.36515 6.65302 7.11854 7.20573 7.35554 7.91970 8.31272 9.19547 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.017695 B = 0.006069 C = 0.005067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.978065 B = 4612.598454 C = 5524.836226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.127 3.873 3 H 0.031 0.969 4 C 0.144 3.856 5 N -0.612 5.612 6 C 0.171 3.829 7 C -0.260 4.260 8 H 0.061 0.939 9 C -0.044 4.044 10 N -0.923 5.923 11 Si 0.953 3.047 12 H -0.284 1.284 13 H -0.299 1.299 14 H -0.279 1.279 15 N -0.688 5.688 16 C 0.496 3.504 17 O -0.580 6.580 18 C 0.114 3.886 19 N -0.372 5.372 20 C 0.259 3.741 21 N -0.574 5.574 22 C 0.183 3.817 23 N -0.333 5.333 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.034 0.966 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.020 0.980 30 H 0.009 0.991 31 H 0.039 0.961 32 H 0.245 0.755 33 H 0.409 0.591 34 H 0.150 0.850 35 H 0.160 0.840 36 H 0.257 0.743 37 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.671 -7.162 -6.940 12.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.019 3.981 3 H 0.049 0.951 4 C 0.017 3.983 5 N -0.334 5.334 6 C 0.027 3.973 7 C -0.391 4.391 8 H 0.078 0.922 9 C -0.240 4.240 10 N -0.570 5.570 11 Si 0.783 3.217 12 H -0.210 1.210 13 H -0.226 1.226 14 H -0.204 1.204 15 N -0.339 5.339 16 C 0.281 3.719 17 O -0.459 6.459 18 C -0.011 4.011 19 N -0.162 5.162 20 C -0.037 4.037 21 N -0.302 5.302 22 C -0.120 4.120 23 N -0.160 5.160 24 H 0.098 0.902 25 H 0.092 0.908 26 H 0.053 0.947 27 H 0.077 0.923 28 H 0.099 0.901 29 H 0.039 0.961 30 H 0.028 0.972 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.246 0.754 34 H 0.168 0.832 35 H 0.178 0.822 36 H 0.272 0.728 37 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -8.258 -6.231 -6.934 12.454 hybrid contribution 1.287 0.608 0.630 1.557 sum -6.971 -5.623 -6.305 10.952 Atomic orbital electron populations 1.22009 0.93964 1.02924 1.01535 1.21612 0.93755 0.96235 0.86480 0.95098 1.21349 0.83357 0.99329 0.94288 1.44084 1.00741 1.20521 1.68067 1.20694 0.94315 0.85931 0.96368 1.19404 0.95124 1.10674 1.13872 0.92162 1.25558 1.00224 1.00744 0.97437 1.70110 1.16918 1.46956 1.23004 0.85486 0.79242 0.79141 0.77866 1.21030 1.22633 1.20442 1.45636 1.65632 1.14154 1.08445 1.20945 0.77865 0.87291 0.85792 1.90722 1.51745 1.17934 1.85503 1.21873 1.08115 0.90117 0.81010 1.50080 1.08031 1.32760 1.25365 1.26879 0.95722 0.93749 0.87353 1.70528 1.13932 1.17889 1.27857 1.26553 0.90883 0.99612 0.94964 1.78056 1.12626 1.10724 1.14625 0.90164 0.90849 0.94718 0.92305 0.90149 0.96147 0.97205 0.94234 0.94533 0.75437 0.83240 0.82227 0.72775 0.74367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.01 9.48 71.98 0.68 -3.32 16 2 C 0.13 4.42 2.88 44.99 0.13 4.55 16 3 H 0.03 1.42 7.58 -2.39 -0.02 1.40 16 4 C 0.14 4.95 5.33 86.38 0.46 5.41 16 5 N -0.61 -27.06 2.78 -726.93 -2.02 -29.08 16 6 C 0.17 7.01 7.61 127.77 0.97 7.98 16 7 C -0.26 -13.60 9.66 84.03 0.81 -12.79 16 8 H 0.06 3.17 7.85 -2.91 -0.02 3.15 16 9 C -0.04 -2.35 5.13 84.86 0.44 -1.92 16 10 N -0.92 -50.54 10.66 21.65 0.23 -50.31 16 11 Si 0.95 44.76 29.57 68.60 2.03 46.78 16 12 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 13 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 14 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 15 N -0.69 -21.66 4.41 -442.54 -1.95 -23.61 16 16 C 0.50 17.22 7.83 87.65 0.69 17.90 16 17 O -0.58 -26.57 15.41 -3.03 -0.05 -26.61 16 18 C 0.11 2.73 7.03 85.63 0.60 3.33 16 19 N -0.37 -10.86 3.40 -355.80 -1.21 -12.07 16 20 C 0.26 6.75 12.63 180.36 2.28 9.03 16 21 N -0.57 -17.18 11.19 -204.00 -2.28 -19.46 16 22 C 0.18 5.39 13.03 180.77 2.36 7.75 16 23 N -0.33 -11.25 11.83 -61.25 -0.72 -11.98 16 24 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.06 2.04 8.03 -2.39 -0.02 2.02 16 28 H 0.08 2.20 7.86 -2.39 -0.02 2.18 16 29 H 0.02 0.87 6.90 -2.39 -0.02 0.85 16 30 H 0.01 0.44 7.30 -2.39 -0.02 0.42 16 31 H 0.04 1.25 7.84 -2.38 -0.02 1.23 16 32 H 0.25 13.29 8.31 -92.71 -0.77 12.52 16 33 H 0.41 10.51 7.17 -92.71 -0.66 9.84 16 34 H 0.15 2.43 8.14 -2.38 -0.02 2.41 16 35 H 0.16 2.94 8.09 -2.39 -0.02 2.92 16 36 H 0.26 4.16 8.06 -2.91 -0.02 4.13 16 37 H 0.24 5.10 8.06 -2.91 -0.02 5.08 16 Total: -1.00 -77.64 316.80 3.85 -73.79 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: 0.41 Total: 14.61 kcal Atomic # 6 Polarization: 28.52 SS G_CDS: 9.41 Total: 37.93 kcal Atomic # 7 Polarization: -138.55 SS G_CDS: -7.96 Total: -146.51 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.05 Total: -26.61 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -77.64 3.85 -73.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699471698.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.109 kcal (2) G-P(sol) polarization free energy of solvation -77.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds