Wall clock time and date at job start Mon Mar 30 2020 00:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36938 * 119.99593 * 2 1 4 4 H 1.08001 * 119.99482 * 213.54685 * 3 2 1 5 5 C 1.38810 * 120.00401 * 33.54922 * 3 2 1 6 6 N 1.31620 * 120.00043 * 5.67939 * 5 3 2 7 7 Si 1.86805 * 119.99851 * 185.68480 * 5 3 2 8 8 H 1.48501 * 109.46943 * 359.97438 * 7 5 3 9 9 H 1.48496 * 109.47019 * 119.99897 * 7 5 3 10 10 H 1.48506 * 109.46648 * 239.99906 * 7 5 3 11 11 C 1.46492 * 120.00041 * 179.97438 * 2 1 3 12 12 C 1.53007 * 109.47074 * 90.00083 * 11 2 1 13 13 C 1.52998 * 109.47047 * 179.97438 * 12 11 2 14 14 N 1.46505 * 109.46685 * 180.02562 * 13 12 11 15 15 C 1.46498 * 120.00215 * 270.00035 * 14 13 12 16 16 C 1.34781 * 119.99511 * 90.00365 * 14 13 12 17 17 O 1.21612 * 120.00489 * 0.94360 * 16 14 13 18 18 C 1.47239 * 119.99624 * 180.93967 * 16 14 13 19 19 C 1.37005 * 127.18476 * 170.09500 * 18 16 14 20 20 N 1.33322 * 106.36764 * 180.02562 * 19 18 16 21 21 N 1.28510 * 109.44026 * 0.02562 * 20 19 18 22 22 N 1.28709 * 110.64106 * 359.97438 * 21 20 19 23 23 H 0.97005 * 126.03582 * 179.97438 * 22 21 20 24 24 H 1.08997 * 109.47539 * 265.10234 * 1 2 3 25 25 H 1.09008 * 109.46949 * 25.10560 * 1 2 3 26 26 H 1.08999 * 109.46759 * 145.10118 * 1 2 3 27 27 H 0.96997 * 120.00150 * 179.97438 * 6 5 3 28 28 H 1.09007 * 109.47557 * 330.00413 * 11 2 1 29 29 H 1.08997 * 109.47358 * 210.00037 * 11 2 1 30 30 H 1.09004 * 109.46839 * 60.00284 * 12 11 2 31 31 H 1.08990 * 109.47162 * 300.00531 * 12 11 2 32 32 H 1.08992 * 109.47142 * 60.00807 * 13 12 11 33 33 H 1.08997 * 109.47521 * 300.00038 * 13 12 11 34 34 H 1.08999 * 109.47170 * 263.28963 * 15 14 13 35 35 H 1.09001 * 109.46943 * 23.28496 * 15 14 13 36 36 H 1.08995 * 109.46743 * 143.28932 * 15 14 13 37 37 H 1.07991 * 126.81663 * 0.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.0947 1.2638 -0.5169 5 6 1.6290 2.2880 0.6643 6 7 0.5357 2.1649 1.3868 7 14 2.4800 3.9457 0.5329 8 1 3.6805 3.8186 -0.3321 9 1 1.5454 4.9363 -0.0590 10 1 2.8910 4.3997 1.8858 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7110 -1.4418 13 6 3.2181 -3.0356 -1.4412 14 7 3.4628 -3.4588 -2.8223 15 6 2.4867 -4.3052 -3.5130 16 6 4.5860 -3.0694 -3.4574 17 8 5.4045 -2.3810 -2.8784 18 6 4.8221 -3.4774 -4.8522 19 6 5.8024 -3.0214 -5.6938 20 7 5.6340 -3.6640 -6.8497 21 7 4.6310 -4.4616 -6.7536 22 7 4.1068 -4.3919 -5.5802 23 1 3.3402 -4.8971 -5.2666 24 1 -0.3634 -0.0877 1.0239 25 1 -0.3633 0.9307 -0.4361 26 1 -0.3633 -0.8429 -0.5880 27 1 0.1721 2.9349 1.8513 28 1 1.6084 -2.0282 0.5147 29 1 3.1499 -1.1381 0.5143 30 1 3.0417 -0.9515 -1.9559 31 1 1.5002 -1.8414 -1.9556 32 1 2.6294 -3.7953 -0.9271 33 1 4.1705 -2.9047 -0.9276 34 1 2.7953 -5.3481 -3.4418 35 1 1.5078 -4.1835 -3.0492 36 1 2.4307 -4.0135 -4.5617 37 1 6.5609 -2.2873 -5.4660 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700187126.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:04 Heat of formation + Delta-G solvation = 102.650730 kcal Electronic energy + Delta-G solvation = -20124.272272 eV Core-core repulsion = 16940.772270 eV Total energy + Delta-G solvation = -3183.500002 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.69836 -39.94168 -36.57822 -35.64281 -33.95299 -32.46665 -31.53617 -30.19047 -27.70274 -26.25187 -25.69437 -23.87931 -23.30770 -22.12673 -20.86213 -20.26370 -18.30929 -17.22894 -16.78227 -16.71909 -16.32851 -15.40283 -14.85981 -14.67290 -14.45200 -14.04548 -13.59761 -13.41825 -13.04389 -12.81031 -12.61916 -12.46431 -11.87645 -11.54900 -11.35795 -11.02290 -11.01285 -10.85745 -10.80182 -10.47099 -10.35553 -10.19888 -9.94404 -9.80754 -9.73628 -9.00255 -8.50270 -6.58615 -5.75715 -3.30107 0.62038 2.01946 2.11005 2.58222 2.85010 3.37705 3.45260 3.48665 3.82904 4.24940 4.33430 4.49863 4.65973 4.70150 4.85557 5.04120 5.16944 5.32866 5.42682 5.65902 5.71263 5.83873 5.97455 6.01924 6.22180 6.39150 6.43097 6.74627 6.75826 6.96815 6.98266 7.31833 7.65022 7.73180 7.83973 7.96903 8.48435 9.25860 9.85732 10.40195 11.30644 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.026798 B = 0.003962 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.595948 B = 7065.976349 C = 7663.077544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.600 5.600 3 C -0.259 4.259 4 H 0.064 0.936 5 C 0.009 3.991 6 N -0.905 5.905 7 Si 0.902 3.098 8 H -0.276 1.276 9 H -0.289 1.289 10 H -0.288 1.288 11 C 0.155 3.845 12 C -0.153 4.153 13 C 0.117 3.883 14 N -0.607 5.607 15 C 0.054 3.946 16 C 0.590 3.410 17 O -0.503 6.503 18 C -0.060 4.060 19 C 0.031 3.969 20 N -0.270 5.270 21 N -0.057 5.057 22 N -0.383 5.383 23 H 0.452 0.548 24 H 0.020 0.980 25 H 0.048 0.952 26 H -0.008 1.008 27 H 0.253 0.747 28 H 0.034 0.966 29 H 0.049 0.951 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.098 0.902 36 H 0.064 0.936 37 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.187 -16.102 -10.254 19.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.322 5.322 3 C -0.389 4.389 4 H 0.082 0.918 5 C -0.190 4.190 6 N -0.549 5.549 7 Si 0.732 3.268 8 H -0.201 1.201 9 H -0.216 1.216 10 H -0.215 1.215 11 C 0.027 3.973 12 C -0.194 4.194 13 C -0.005 4.005 14 N -0.341 5.341 15 C -0.090 4.090 16 C 0.374 3.626 17 O -0.375 6.375 18 C -0.194 4.194 19 C -0.128 4.128 20 N -0.135 5.135 21 N -0.039 5.039 22 N -0.118 5.118 23 H 0.307 0.693 24 H 0.038 0.962 25 H 0.067 0.933 26 H 0.010 0.990 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.117 0.883 36 H 0.082 0.918 37 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 3.534 -16.183 -11.210 20.001 hybrid contribution -0.291 1.093 1.111 1.585 sum 3.243 -15.090 -10.099 18.445 Atomic orbital electron populations 1.20729 0.83221 0.96804 0.97463 1.43768 1.01503 1.00709 1.86260 1.19181 1.04916 0.88025 1.26817 0.91809 1.25285 0.97855 0.99245 0.96575 1.70014 1.22288 1.29369 1.33258 0.86219 0.79171 0.83978 0.77445 1.20071 1.21596 1.21493 1.20632 0.96312 0.88608 0.91773 1.22641 0.99168 0.95102 1.02511 1.21761 1.02071 0.97442 0.79210 1.47847 1.19715 1.50843 1.15676 1.22193 0.95122 0.94354 0.97316 1.16830 0.82132 0.80556 0.83036 1.90908 1.44602 1.36856 1.65182 1.22474 0.99645 1.00668 0.96594 1.23957 0.99179 1.01207 0.88466 1.74985 1.10135 1.06323 1.22089 1.78166 1.06271 1.17987 1.01435 1.46758 1.25463 1.29769 1.09825 0.69263 0.96211 0.93329 0.98996 0.93727 0.94803 0.93219 0.91620 0.92860 0.90260 0.89283 0.91682 0.88315 0.91753 0.77812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.97 9.00 59.85 0.54 4.50 16 2 N -0.60 -15.13 2.89 -181.12 -0.52 -15.65 16 3 C -0.26 -7.25 9.55 -15.06 -0.14 -7.39 16 4 H 0.06 1.78 7.83 -52.49 -0.41 1.37 16 5 C 0.01 0.27 5.17 -17.43 -0.09 0.18 16 6 N -0.91 -26.59 11.08 55.49 0.61 -25.97 16 7 Si 0.90 22.08 29.56 -169.99 -5.02 17.06 16 8 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 9 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 10 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 11 C 0.15 3.08 5.69 -4.04 -0.02 3.06 16 12 C -0.15 -2.52 5.86 -26.73 -0.16 -2.68 16 13 C 0.12 1.45 5.38 -4.04 -0.02 1.42 16 14 N -0.61 -6.52 2.87 -182.93 -0.53 -7.05 16 15 C 0.05 0.33 8.93 59.85 0.53 0.86 16 16 C 0.59 7.60 7.66 -12.60 -0.10 7.51 16 17 O -0.50 -8.39 16.51 5.27 0.09 -8.31 16 18 C -0.06 -0.66 6.74 -82.33 -0.55 -1.21 16 19 C 0.03 0.36 11.88 -17.35 -0.21 0.15 16 20 N -0.27 -3.39 12.35 30.47 0.38 -3.01 16 21 N -0.06 -0.63 13.35 60.35 0.81 0.17 16 22 N -0.38 -3.34 6.07 33.31 0.20 -3.13 16 23 H 0.45 2.30 5.09 -190.33 -0.97 1.33 16 24 H 0.02 0.51 7.74 -51.93 -0.40 0.11 16 25 H 0.05 1.28 7.21 -51.92 -0.37 0.91 16 26 H -0.01 -0.18 8.11 -51.93 -0.42 -0.60 16 27 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.03 0.61 8.07 -51.93 -0.42 0.19 16 29 H 0.05 1.02 8.04 -51.93 -0.42 0.60 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.08 0.77 8.07 -51.93 -0.42 0.35 16 33 H 0.09 1.22 7.41 -51.93 -0.38 0.84 16 34 H 0.06 0.22 7.81 -51.93 -0.41 -0.18 16 35 H 0.10 0.52 8.02 -51.93 -0.42 0.11 16 36 H 0.06 0.34 5.15 -51.93 -0.27 0.07 16 37 H 0.21 1.97 8.06 -52.49 -0.42 1.54 16 LS Contribution 313.06 15.07 4.72 4.72 Total: -1.00 -34.38 313.06 -5.20 -39.58 By element: Atomic # 1 Polarization: 0.90 SS G_CDS: -5.71 Total: -4.81 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: -0.22 Total: 6.41 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: 0.95 Total: -54.64 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: 0.09 Total: -8.31 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -34.38 -5.20 -39.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700187126.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.229 kcal (2) G-P(sol) polarization free energy of solvation -34.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds