Wall clock time and date at job start Mon Mar 30 2020 00:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36938 * 119.99593 * 2 1 4 4 H 1.08001 * 119.99482 * 213.54685 * 3 2 1 5 5 C 1.38810 * 120.00401 * 33.54922 * 3 2 1 6 6 N 1.31620 * 120.00043 * 5.67939 * 5 3 2 7 7 Si 1.86805 * 119.99851 * 185.68480 * 5 3 2 8 8 H 1.48501 * 109.46943 * 359.97438 * 7 5 3 9 9 H 1.48496 * 109.47019 * 119.99897 * 7 5 3 10 10 H 1.48506 * 109.46648 * 239.99906 * 7 5 3 11 11 C 1.46492 * 120.00041 * 179.97438 * 2 1 3 12 12 C 1.53007 * 109.47074 * 90.00083 * 11 2 1 13 13 C 1.52998 * 109.47047 * 179.97438 * 12 11 2 14 14 N 1.46505 * 109.46685 * 180.02562 * 13 12 11 15 15 C 1.46498 * 120.00215 * 270.00035 * 14 13 12 16 16 C 1.34781 * 119.99511 * 90.00365 * 14 13 12 17 17 O 1.21612 * 120.00489 * 0.94360 * 16 14 13 18 18 C 1.47239 * 119.99624 * 180.93967 * 16 14 13 19 19 C 1.37005 * 127.18476 * 170.09500 * 18 16 14 20 20 N 1.33322 * 106.36764 * 180.02562 * 19 18 16 21 21 N 1.28510 * 109.44026 * 0.02562 * 20 19 18 22 22 N 1.28709 * 110.64106 * 359.97438 * 21 20 19 23 23 H 0.97005 * 126.03582 * 179.97438 * 22 21 20 24 24 H 1.08997 * 109.47539 * 265.10234 * 1 2 3 25 25 H 1.09008 * 109.46949 * 25.10560 * 1 2 3 26 26 H 1.08999 * 109.46759 * 145.10118 * 1 2 3 27 27 H 0.96997 * 120.00150 * 179.97438 * 6 5 3 28 28 H 1.09007 * 109.47557 * 330.00413 * 11 2 1 29 29 H 1.08997 * 109.47358 * 210.00037 * 11 2 1 30 30 H 1.09004 * 109.46839 * 60.00284 * 12 11 2 31 31 H 1.08990 * 109.47162 * 300.00531 * 12 11 2 32 32 H 1.08992 * 109.47142 * 60.00807 * 13 12 11 33 33 H 1.08997 * 109.47521 * 300.00038 * 13 12 11 34 34 H 1.08999 * 109.47170 * 263.28963 * 15 14 13 35 35 H 1.09001 * 109.46943 * 23.28496 * 15 14 13 36 36 H 1.08995 * 109.46743 * 143.28932 * 15 14 13 37 37 H 1.07991 * 126.81663 * 0.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.0947 1.2638 -0.5169 5 6 1.6290 2.2880 0.6643 6 7 0.5357 2.1649 1.3868 7 14 2.4800 3.9457 0.5329 8 1 3.6805 3.8186 -0.3321 9 1 1.5454 4.9363 -0.0590 10 1 2.8910 4.3997 1.8858 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7110 -1.4418 13 6 3.2181 -3.0356 -1.4412 14 7 3.4628 -3.4588 -2.8223 15 6 2.4867 -4.3052 -3.5130 16 6 4.5860 -3.0694 -3.4574 17 8 5.4045 -2.3810 -2.8784 18 6 4.8221 -3.4774 -4.8522 19 6 5.8024 -3.0214 -5.6938 20 7 5.6340 -3.6640 -6.8497 21 7 4.6310 -4.4616 -6.7536 22 7 4.1068 -4.3919 -5.5802 23 1 3.3402 -4.8971 -5.2666 24 1 -0.3634 -0.0877 1.0239 25 1 -0.3633 0.9307 -0.4361 26 1 -0.3633 -0.8429 -0.5880 27 1 0.1721 2.9349 1.8513 28 1 1.6084 -2.0282 0.5147 29 1 3.1499 -1.1381 0.5143 30 1 3.0417 -0.9515 -1.9559 31 1 1.5002 -1.8414 -1.9556 32 1 2.6294 -3.7953 -0.9271 33 1 4.1705 -2.9047 -0.9276 34 1 2.7953 -5.3481 -3.4418 35 1 1.5078 -4.1835 -3.0492 36 1 2.4307 -4.0135 -4.5617 37 1 6.5609 -2.2873 -5.4660 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700187126.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:03 Heat of formation + Delta-G solvation = 77.749359 kcal Electronic energy + Delta-G solvation = -20125.352077 eV Core-core repulsion = 16940.772270 eV Total energy + Delta-G solvation = -3184.579807 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.55097 -40.92406 -37.95845 -37.05013 -34.98186 -33.94436 -32.72817 -31.70020 -28.47944 -27.93160 -27.36893 -25.03762 -24.30781 -23.35819 -22.10373 -21.65521 -19.17620 -18.69842 -18.08961 -17.59104 -17.51062 -16.82922 -16.24853 -15.87486 -15.52755 -15.44841 -14.91397 -14.61527 -14.49765 -14.26946 -13.42809 -13.39493 -13.35940 -13.00775 -12.80322 -12.56987 -12.52594 -12.37613 -12.25059 -12.15751 -11.89574 -11.83615 -11.42207 -11.36293 -10.71336 -10.65511 -9.90574 -8.61491 -7.88192 -5.45237 -0.25451 1.11702 1.31921 1.42626 1.44401 1.55196 1.73303 1.94388 2.48006 3.03330 3.27376 3.44929 3.71096 3.78892 3.87337 4.01607 4.08616 4.25981 4.46271 4.52517 4.60528 4.63447 4.76438 4.87450 4.89530 4.94208 5.19897 5.27236 5.35356 5.54171 5.58302 5.63701 5.65717 6.06423 6.38505 6.78354 7.10188 7.16528 7.86431 8.32758 9.15447 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.026798 B = 0.003962 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.595948 B = 7065.976349 C = 7663.077544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.621 5.621 3 C -0.269 4.269 4 H 0.055 0.945 5 C -0.042 4.042 6 N -0.934 5.934 7 Si 0.964 3.036 8 H -0.271 1.271 9 H -0.287 1.287 10 H -0.286 1.286 11 C 0.151 3.849 12 C -0.133 4.133 13 C 0.126 3.874 14 N -0.603 5.603 15 C 0.041 3.959 16 C 0.588 3.412 17 O -0.552 6.552 18 C -0.061 4.061 19 C 0.025 3.975 20 N -0.294 5.294 21 N -0.060 5.060 22 N -0.355 5.355 23 H 0.468 0.532 24 H -0.002 1.002 25 H 0.018 0.982 26 H 0.032 0.968 27 H 0.251 0.749 28 H 0.061 0.939 29 H 0.035 0.965 30 H 0.025 0.975 31 H 0.062 0.938 32 H 0.120 0.880 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.115 0.885 36 H 0.072 0.928 37 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.628 -17.987 -10.983 21.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.345 5.345 3 C -0.399 4.399 4 H 0.073 0.927 5 C -0.238 4.238 6 N -0.579 5.579 7 Si 0.791 3.209 8 H -0.196 1.196 9 H -0.214 1.214 10 H -0.213 1.213 11 C 0.025 3.975 12 C -0.174 4.174 13 C 0.003 3.997 14 N -0.334 5.334 15 C -0.101 4.101 16 C 0.373 3.627 17 O -0.428 6.428 18 C -0.195 4.195 19 C -0.135 4.135 20 N -0.159 5.159 21 N -0.042 5.042 22 N -0.094 5.094 23 H 0.327 0.673 24 H 0.016 0.984 25 H 0.037 0.963 26 H 0.050 0.950 27 H 0.060 0.940 28 H 0.079 0.921 29 H 0.054 0.946 30 H 0.044 0.956 31 H 0.081 0.919 32 H 0.138 0.862 33 H 0.090 0.910 34 H 0.119 0.881 35 H 0.133 0.867 36 H 0.090 0.910 37 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 2.942 -18.142 -11.972 21.934 hybrid contribution -0.163 1.581 1.318 2.065 sum 2.779 -16.561 -10.654 19.887 Atomic orbital electron populations 1.20512 0.83020 0.96852 0.96561 1.44047 1.02013 1.01739 1.86654 1.19371 1.04680 0.89617 1.26265 0.92730 1.25973 0.98655 1.02448 0.96718 1.70147 1.23482 1.30025 1.34254 0.85269 0.78236 0.80038 0.77322 1.19592 1.21362 1.21303 1.20810 0.95485 0.87160 0.94060 1.22312 0.99492 0.96224 0.99406 1.21577 1.01245 0.96368 0.80488 1.47869 1.19816 1.50534 1.15198 1.22595 0.94749 0.95384 0.97356 1.17044 0.82240 0.79954 0.83416 1.90886 1.46447 1.39166 1.66304 1.22159 1.00088 1.01414 0.95865 1.24228 0.99596 1.01331 0.88373 1.74988 1.10984 1.07159 1.22732 1.78106 1.06201 1.17810 1.02132 1.46735 1.25152 1.28741 1.08749 0.67270 0.98353 0.96314 0.94952 0.94022 0.92106 0.94638 0.95555 0.91898 0.86216 0.90957 0.88082 0.86671 0.90996 0.76959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.48 9.00 127.77 1.15 9.63 16 2 N -0.62 -31.24 2.89 -726.92 -2.10 -33.34 16 3 C -0.27 -15.21 9.55 84.03 0.80 -14.40 16 4 H 0.05 3.13 7.83 -2.91 -0.02 3.10 16 5 C -0.04 -2.39 5.17 84.86 0.44 -1.95 16 6 N -0.93 -55.61 11.08 21.65 0.24 -55.37 16 7 Si 0.96 45.98 29.56 68.60 2.03 48.00 16 8 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 9 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 10 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 11 C 0.15 5.86 5.69 86.38 0.49 6.35 16 12 C -0.13 -4.20 5.86 30.60 0.18 -4.02 16 13 C 0.13 2.80 5.38 86.38 0.47 3.27 16 14 N -0.60 -11.34 2.87 -850.91 -2.44 -13.79 16 15 C 0.04 0.32 8.93 127.77 1.14 1.46 16 16 C 0.59 14.49 7.66 86.61 0.66 15.15 16 17 O -0.55 -18.63 16.51 -4.07 -0.07 -18.69 16 18 C -0.06 -1.24 6.74 40.41 0.27 -0.97 16 19 C 0.02 0.55 11.88 84.18 1.00 1.55 16 20 N -0.29 -7.07 12.35 -57.51 -0.71 -7.78 16 21 N -0.06 -1.24 13.35 37.02 0.49 -0.75 16 22 N -0.35 -5.27 6.07 -48.52 -0.29 -5.57 16 23 H 0.47 3.05 5.09 -219.89 -1.12 1.93 16 24 H 0.00 -0.10 7.74 -2.39 -0.02 -0.11 16 25 H 0.02 0.97 7.21 -2.38 -0.02 0.96 16 26 H 0.03 1.27 8.11 -2.39 -0.02 1.25 16 27 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 28 H 0.06 2.03 8.07 -2.38 -0.02 2.01 16 29 H 0.04 1.46 8.04 -2.39 -0.02 1.44 16 30 H 0.03 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.12 1.77 8.07 -2.39 -0.02 1.75 16 33 H 0.07 1.91 7.41 -2.39 -0.02 1.89 16 34 H 0.10 0.14 7.81 -2.39 -0.02 0.12 16 35 H 0.11 0.62 8.02 -2.39 -0.02 0.60 16 36 H 0.07 0.46 5.15 -2.39 -0.01 0.45 16 37 H 0.21 4.11 8.06 -2.92 -0.02 4.09 16 Total: -1.00 -76.48 313.06 3.71 -72.76 By element: Atomic # 1 Polarization: -1.49 SS G_CDS: -0.04 Total: -1.52 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: 6.60 Total: 16.05 kcal Atomic # 7 Polarization: -111.79 SS G_CDS: -4.81 Total: -116.60 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.07 Total: -18.69 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.00 kcal Total: -76.48 3.71 -72.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700187126.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.513 kcal (2) G-P(sol) polarization free energy of solvation -76.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds