Wall clock time and date at job start Mon Mar 30 2020 00:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.46843 * 2 1 4 4 C 1.52997 * 109.46913 * 120.00079 * 2 1 3 5 5 C 1.53003 * 109.46776 * 185.00369 * 4 2 1 6 6 N 1.46505 * 109.47172 * 180.02562 * 5 4 2 7 7 C 1.34775 * 120.00040 * 180.02562 * 6 5 4 8 8 O 1.21612 * 119.99824 * 5.13046 * 7 6 5 9 9 C 1.47236 * 119.99551 * 185.12889 * 7 6 5 10 10 C 1.37001 * 127.19356 * 354.39676 * 9 7 6 11 11 N 1.33316 * 106.37230 * 180.24225 * 10 9 7 12 12 N 1.28512 * 109.44185 * 359.55435 * 11 10 9 13 13 N 1.28720 * 110.63474 * 0.46297 * 12 11 10 14 14 C 1.46493 * 126.03591 * 179.72150 * 13 12 11 15 15 N 1.46498 * 109.47281 * 240.00470 * 2 1 3 16 16 C 1.36934 * 120.00045 * 84.99401 * 15 2 1 17 17 H 1.07993 * 120.00516 * 0.02562 * 16 15 2 18 18 C 1.38821 * 119.99971 * 179.97438 * 16 15 2 19 19 N 1.31616 * 119.99402 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00056 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47040 * 60.00336 * 20 18 16 22 22 H 1.48497 * 109.47219 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47401 * 300.00366 * 20 18 16 24 24 H 1.08996 * 109.46827 * 59.99546 * 1 2 3 25 25 H 1.08997 * 109.46547 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47177 * 300.00010 * 1 2 3 27 27 H 1.08994 * 109.47289 * 65.00344 * 4 2 1 28 28 H 1.08998 * 109.47208 * 304.99805 * 4 2 1 29 29 H 1.08994 * 109.47231 * 59.99940 * 5 4 2 30 30 H 1.09004 * 109.47096 * 300.00012 * 5 4 2 31 31 H 0.97004 * 119.99318 * 359.97438 * 6 5 4 32 32 H 1.07999 * 126.81125 * 359.97235 * 10 9 7 33 33 H 1.09003 * 109.46887 * 274.07070 * 14 13 12 34 34 H 1.09000 * 109.47346 * 34.06420 * 14 13 12 35 35 H 1.08992 * 109.47452 * 154.07138 * 14 13 12 36 36 H 0.97003 * 119.99519 * 265.00104 * 15 2 1 37 37 H 0.97005 * 119.99228 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3137 6 7 4.0533 -1.3044 2.5096 7 6 5.3741 -1.3397 2.7752 8 8 6.1520 -0.7203 2.0750 9 6 5.8753 -2.1283 3.9131 10 6 5.1310 -2.7898 4.8540 11 7 6.0006 -3.3581 5.6896 12 7 7.1981 -3.0901 5.3079 13 7 7.1837 -2.3543 4.2519 14 6 8.3586 -1.8479 3.5383 15 7 2.0184 -0.6905 -1.1962 16 6 2.1491 -0.0073 -2.3757 17 1 1.8926 1.0406 -2.4242 18 6 2.6124 -0.6615 -3.5091 19 7 2.9255 -1.9385 -3.4499 20 14 2.7914 0.2706 -5.1180 21 1 3.7465 1.3931 -4.9361 22 1 3.3003 -0.6478 -6.1681 23 1 1.4692 0.8074 -5.5288 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.7517 -1.7715 1.2055 28 1 1.6054 -0.2617 2.1369 29 1 3.8532 0.4370 1.3574 30 1 3.9995 -1.0727 0.4259 31 1 3.4259 -1.7359 3.1105 32 1 4.0535 -2.8374 4.9105 33 1 8.6871 -0.9145 3.9956 34 1 9.1621 -2.5823 3.5941 35 1 8.1009 -1.6700 2.4943 36 1 2.2491 -1.6317 -1.1526 37 1 3.2496 -2.3955 -4.2418 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700322970.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:05 Heat of formation + Delta-G solvation = 67.772209 kcal Electronic energy + Delta-G solvation = -19850.866564 eV Core-core repulsion = 16665.854115 eV Total energy + Delta-G solvation = -3185.012448 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.48978 -39.56327 -36.71576 -35.09801 -34.36164 -32.46934 -31.64000 -29.31963 -28.35524 -28.01008 -24.61455 -23.70519 -22.94856 -21.89955 -20.82154 -19.82197 -18.26171 -17.26860 -17.01060 -16.79956 -15.89423 -15.43513 -14.82434 -14.64001 -14.18807 -14.01267 -13.55995 -13.53212 -13.20759 -13.05964 -12.56861 -12.28470 -12.09135 -11.61268 -11.36303 -11.19415 -10.97715 -10.78969 -10.69694 -10.45010 -10.38336 -10.20630 -9.94992 -9.73455 -9.67134 -9.07024 -8.92028 -6.99385 -5.78497 -3.07438 0.74701 1.89123 2.09414 2.94242 3.04559 3.43340 3.48156 3.48689 4.09928 4.31058 4.52819 4.57947 4.76859 4.82009 5.15720 5.18638 5.31515 5.39741 5.50919 5.60765 5.69291 5.79904 5.99109 6.10287 6.13630 6.22248 6.29940 6.35335 6.51151 6.62195 6.81409 7.01806 7.31295 7.68560 7.95146 8.12653 8.39837 9.51336 10.07313 10.41823 11.43990 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.024024 B = 0.003912 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.236496 B = 7155.382040 C = 7921.455110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.175 3.825 3 H 0.050 0.950 4 C -0.134 4.134 5 C 0.123 3.877 6 N -0.708 5.708 7 C 0.590 3.410 8 O -0.531 6.531 9 C -0.064 4.064 10 C -0.002 4.002 11 N -0.275 5.275 12 N -0.064 5.064 13 N -0.255 5.255 14 C 0.074 3.926 15 N -0.724 5.724 16 C -0.240 4.240 17 H 0.070 0.930 18 C -0.011 4.011 19 N -0.933 5.933 20 Si 0.905 3.095 21 H -0.286 1.286 22 H -0.292 1.292 23 H -0.286 1.286 24 H 0.054 0.946 25 H 0.046 0.954 26 H 0.036 0.964 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.400 0.600 32 H 0.199 0.801 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.119 0.881 36 H 0.383 0.617 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.823 0.362 15.996 16.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.064 3.936 3 H 0.068 0.932 4 C -0.172 4.172 5 C 0.001 3.999 6 N -0.358 5.358 7 C 0.373 3.627 8 O -0.408 6.408 9 C -0.199 4.199 10 C -0.163 4.163 11 N -0.137 5.137 12 N -0.045 5.045 13 N -0.051 5.051 14 C -0.066 4.066 15 N -0.366 5.366 16 C -0.371 4.371 17 H 0.088 0.912 18 C -0.207 4.207 19 N -0.581 5.581 20 Si 0.736 3.264 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.213 1.213 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.055 0.945 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.235 0.765 32 H 0.215 0.785 33 H 0.114 0.886 34 H 0.120 0.880 35 H 0.138 0.862 36 H 0.217 0.783 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.334 0.226 16.323 17.174 hybrid contribution -0.752 0.477 -1.495 1.741 sum 4.582 0.704 14.827 15.535 Atomic orbital electron populations 1.22426 0.99036 1.00900 1.00036 1.20150 0.91962 0.95577 0.85900 0.93209 1.22084 0.93427 1.02104 0.99628 1.21598 0.94802 0.97390 0.86124 1.45807 1.05831 1.56445 1.27750 1.16672 0.83327 0.80503 0.82206 1.90831 1.55766 1.44118 1.50057 1.22094 0.85335 1.09311 1.03161 1.23885 1.01462 0.98250 0.92664 1.74879 0.94931 1.20297 1.23632 1.78268 1.17780 1.09054 0.99415 1.47649 1.07164 1.31695 1.18608 1.22602 0.84091 1.00992 0.98919 1.42451 1.78137 1.10648 1.05367 1.19177 1.36732 0.93847 0.87376 0.91234 1.24719 1.02065 0.95933 0.98029 1.69643 1.50770 1.08675 1.29018 0.86297 0.77760 0.78662 0.83642 1.21244 1.21746 1.21325 0.92689 0.93476 0.94514 0.91349 0.91649 0.91184 0.89258 0.76510 0.78464 0.88569 0.88007 0.86249 0.78290 0.93486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 9.49 37.16 0.35 -2.35 16 2 C 0.17 3.12 2.89 -67.93 -0.20 2.92 16 3 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 4 C -0.13 -1.82 4.87 -26.73 -0.13 -1.95 16 5 C 0.12 1.81 5.57 -4.04 -0.02 1.78 16 6 N -0.71 -8.30 5.55 -61.44 -0.34 -8.64 16 7 C 0.59 7.96 7.79 -12.61 -0.10 7.86 16 8 O -0.53 -8.86 14.85 5.27 0.08 -8.79 16 9 C -0.06 -0.77 6.98 -82.33 -0.57 -1.35 16 10 C 0.00 -0.02 11.54 -17.36 -0.20 -0.22 16 11 N -0.27 -3.60 12.35 30.47 0.38 -3.23 16 12 N -0.06 -0.85 13.14 60.35 0.79 -0.05 16 13 N -0.25 -3.04 3.79 -64.13 -0.24 -3.28 16 14 C 0.07 0.65 10.98 59.84 0.66 1.30 16 15 N -0.72 -16.93 4.57 -53.42 -0.24 -17.17 16 16 C -0.24 -6.42 9.93 -15.06 -0.15 -6.57 16 17 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 18 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 19 N -0.93 -27.57 13.06 55.49 0.72 -26.85 16 20 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.09 1.66 7.75 -51.93 -0.40 1.26 16 31 H 0.40 3.31 7.51 -40.82 -0.31 3.01 16 32 H 0.20 1.26 7.56 -52.49 -0.40 0.87 16 33 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.12 1.18 6.36 -51.93 -0.33 0.85 16 36 H 0.38 9.57 7.80 -40.82 -0.32 9.25 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 320.05 15.07 4.82 4.82 Total: -1.00 -33.14 320.05 -4.62 -37.76 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -5.10 Total: 7.34 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -0.46 Total: 1.02 kcal Atomic # 7 Polarization: -60.29 SS G_CDS: 1.07 Total: -59.22 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.08 Total: -8.79 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.14 -4.62 -37.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700322970.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.533 kcal (2) G-P(sol) polarization free energy of solvation -33.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds