Wall clock time and date at job start Mon Mar 30 2020 00:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.46843 * 2 1 4 4 C 1.52997 * 109.46913 * 120.00079 * 2 1 3 5 5 C 1.53003 * 109.46776 * 185.00369 * 4 2 1 6 6 N 1.46505 * 109.47172 * 180.02562 * 5 4 2 7 7 C 1.34775 * 120.00040 * 180.02562 * 6 5 4 8 8 O 1.21612 * 119.99824 * 5.13046 * 7 6 5 9 9 C 1.47236 * 119.99551 * 185.12889 * 7 6 5 10 10 C 1.37001 * 127.19356 * 354.39676 * 9 7 6 11 11 N 1.33316 * 106.37230 * 180.24225 * 10 9 7 12 12 N 1.28512 * 109.44185 * 359.55435 * 11 10 9 13 13 N 1.28720 * 110.63474 * 0.46297 * 12 11 10 14 14 C 1.46493 * 126.03591 * 179.72150 * 13 12 11 15 15 N 1.46498 * 109.47281 * 240.00470 * 2 1 3 16 16 C 1.36934 * 120.00045 * 84.99401 * 15 2 1 17 17 H 1.07993 * 120.00516 * 0.02562 * 16 15 2 18 18 C 1.38821 * 119.99971 * 179.97438 * 16 15 2 19 19 N 1.31616 * 119.99402 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00056 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47040 * 60.00336 * 20 18 16 22 22 H 1.48497 * 109.47219 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47401 * 300.00366 * 20 18 16 24 24 H 1.08996 * 109.46827 * 59.99546 * 1 2 3 25 25 H 1.08997 * 109.46547 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47177 * 300.00010 * 1 2 3 27 27 H 1.08994 * 109.47289 * 65.00344 * 4 2 1 28 28 H 1.08998 * 109.47208 * 304.99805 * 4 2 1 29 29 H 1.08994 * 109.47231 * 59.99940 * 5 4 2 30 30 H 1.09004 * 109.47096 * 300.00012 * 5 4 2 31 31 H 0.97004 * 119.99318 * 359.97438 * 6 5 4 32 32 H 1.07999 * 126.81125 * 359.97235 * 10 9 7 33 33 H 1.09003 * 109.46887 * 274.07070 * 14 13 12 34 34 H 1.09000 * 109.47346 * 34.06420 * 14 13 12 35 35 H 1.08992 * 109.47452 * 154.07138 * 14 13 12 36 36 H 0.97003 * 119.99519 * 265.00104 * 15 2 1 37 37 H 0.97005 * 119.99228 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3137 6 7 4.0533 -1.3044 2.5096 7 6 5.3741 -1.3397 2.7752 8 8 6.1520 -0.7203 2.0750 9 6 5.8753 -2.1283 3.9131 10 6 5.1310 -2.7898 4.8540 11 7 6.0006 -3.3581 5.6896 12 7 7.1981 -3.0901 5.3079 13 7 7.1837 -2.3543 4.2519 14 6 8.3586 -1.8479 3.5383 15 7 2.0184 -0.6905 -1.1962 16 6 2.1491 -0.0073 -2.3757 17 1 1.8926 1.0406 -2.4242 18 6 2.6124 -0.6615 -3.5091 19 7 2.9255 -1.9385 -3.4499 20 14 2.7914 0.2706 -5.1180 21 1 3.7465 1.3931 -4.9361 22 1 3.3003 -0.6478 -6.1681 23 1 1.4692 0.8074 -5.5288 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.7517 -1.7715 1.2055 28 1 1.6054 -0.2617 2.1369 29 1 3.8532 0.4370 1.3574 30 1 3.9995 -1.0727 0.4259 31 1 3.4259 -1.7359 3.1105 32 1 4.0535 -2.8374 4.9105 33 1 8.6871 -0.9145 3.9956 34 1 9.1621 -2.5823 3.5941 35 1 8.1009 -1.6700 2.4943 36 1 2.2491 -1.6317 -1.1526 37 1 3.2496 -2.3955 -4.2418 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700322970.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:04 Heat of formation + Delta-G solvation = 42.173274 kcal Electronic energy + Delta-G solvation = -19851.976617 eV Core-core repulsion = 16665.854115 eV Total energy + Delta-G solvation = -3186.122502 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.39948 -40.67376 -38.13754 -36.20487 -35.47460 -34.19367 -32.73878 -30.91435 -29.58610 -28.96469 -25.99049 -25.29438 -24.00635 -22.95054 -21.94030 -21.16553 -19.40172 -19.03189 -17.92102 -17.77401 -17.01901 -16.83381 -16.32127 -15.63066 -15.58005 -15.31928 -15.15786 -14.49048 -14.28541 -14.10522 -13.92355 -13.54602 -13.25160 -13.19111 -12.77516 -12.60239 -12.30696 -12.29254 -12.19647 -12.09654 -11.65319 -11.56812 -11.32215 -11.23011 -10.90282 -10.68772 -10.15646 -8.94656 -7.90364 -5.16426 -0.18697 1.03908 1.18030 1.48502 1.50329 1.55961 1.93222 2.04833 2.59407 3.27362 3.39679 3.44263 3.69600 3.95331 4.00005 4.03313 4.18418 4.26148 4.40096 4.49999 4.61724 4.71332 4.81863 4.91155 4.92165 5.06340 5.12362 5.22717 5.27289 5.36390 5.44789 5.57546 5.66070 6.32946 6.33913 6.97910 7.20430 7.39443 8.18106 8.38833 9.32868 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.024024 B = 0.003912 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.236496 B = 7155.382040 C = 7921.455110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.164 3.836 3 H 0.044 0.956 4 C -0.118 4.118 5 C 0.135 3.865 6 N -0.690 5.690 7 C 0.591 3.409 8 O -0.570 6.570 9 C -0.080 4.080 10 C 0.017 3.983 11 N -0.300 5.300 12 N -0.079 5.079 13 N -0.254 5.254 14 C 0.069 3.931 15 N -0.735 5.735 16 C -0.233 4.233 17 H 0.074 0.926 18 C -0.075 4.075 19 N -0.969 5.969 20 Si 0.963 3.037 21 H -0.281 1.281 22 H -0.299 1.299 23 H -0.279 1.279 24 H 0.030 0.970 25 H 0.044 0.956 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.109 0.891 29 H 0.061 0.939 30 H 0.044 0.956 31 H 0.421 0.579 32 H 0.240 0.760 33 H 0.112 0.888 34 H 0.124 0.876 35 H 0.104 0.896 36 H 0.372 0.628 37 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.696 0.944 17.737 17.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.055 3.945 3 H 0.063 0.937 4 C -0.156 4.156 5 C 0.011 3.989 6 N -0.342 5.342 7 C 0.376 3.624 8 O -0.449 6.449 9 C -0.215 4.215 10 C -0.144 4.144 11 N -0.161 5.161 12 N -0.059 5.059 13 N -0.052 5.052 14 C -0.071 4.071 15 N -0.376 5.376 16 C -0.365 4.365 17 H 0.092 0.908 18 C -0.267 4.267 19 N -0.620 5.620 20 Si 0.793 3.207 21 H -0.208 1.208 22 H -0.226 1.226 23 H -0.205 1.205 24 H 0.049 0.951 25 H 0.064 0.936 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.127 0.873 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.259 0.741 32 H 0.256 0.744 33 H 0.130 0.870 34 H 0.143 0.857 35 H 0.123 0.877 36 H 0.204 0.796 37 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 4.165 0.829 18.131 18.621 hybrid contribution -0.415 0.349 -1.948 2.022 sum 3.751 1.178 16.182 16.653 Atomic orbital electron populations 1.22276 0.97303 1.01038 1.00821 1.20463 0.93036 0.95325 0.85648 0.93750 1.21942 0.92223 1.02424 0.99037 1.21245 0.95524 0.96559 0.85548 1.45519 1.05755 1.55887 1.27031 1.16858 0.83428 0.80033 0.82104 1.90818 1.56801 1.45794 1.51490 1.21998 0.85841 1.10289 1.03364 1.24558 1.03006 0.96036 0.90839 1.74871 0.95329 1.21313 1.24636 1.78238 1.18177 1.09589 0.99938 1.47938 1.07897 1.31042 1.18294 1.22805 0.83874 1.02498 0.97918 1.42654 1.78373 1.10275 1.06290 1.19564 1.34343 0.94091 0.88539 0.90842 1.25430 1.03378 0.96784 1.01142 1.69792 1.52920 1.10110 1.29223 0.85354 0.77867 0.77370 0.80067 1.20762 1.22561 1.20495 0.95091 0.93638 0.90529 0.90628 0.87258 0.92086 0.93777 0.74075 0.74427 0.86960 0.85729 0.87705 0.79562 0.94339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.69 9.49 71.98 0.68 -4.01 16 2 C 0.16 5.58 2.89 44.99 0.13 5.71 16 3 H 0.04 1.57 8.08 -2.39 -0.02 1.55 16 4 C -0.12 -2.88 4.87 30.59 0.15 -2.73 16 5 C 0.13 3.82 5.57 86.38 0.48 4.30 16 6 N -0.69 -14.83 5.55 -466.56 -2.59 -17.42 16 7 C 0.59 15.42 7.79 86.61 0.67 16.09 16 8 O -0.57 -19.23 14.85 -4.07 -0.06 -19.29 16 9 C -0.08 -1.81 6.98 40.41 0.28 -1.53 16 10 C 0.02 0.31 11.54 84.18 0.97 1.28 16 11 N -0.30 -7.34 12.35 -57.51 -0.71 -8.05 16 12 N -0.08 -1.98 13.14 37.02 0.49 -1.50 16 13 N -0.25 -5.82 3.79 -356.79 -1.35 -7.17 16 14 C 0.07 1.15 10.98 127.77 1.40 2.55 16 15 N -0.74 -34.41 4.57 -322.93 -1.48 -35.88 16 16 C -0.23 -12.51 9.93 84.04 0.83 -11.68 16 17 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 18 C -0.08 -4.26 5.50 84.86 0.47 -3.79 16 19 N -0.97 -58.65 13.06 21.65 0.28 -58.37 16 20 Si 0.96 45.96 29.55 68.60 2.03 47.99 16 21 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 22 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 23 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 24 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.04 1.68 7.75 -2.38 -0.02 1.66 16 31 H 0.42 5.45 7.51 -92.71 -0.70 4.76 16 32 H 0.24 2.02 7.56 -2.91 -0.02 2.00 16 33 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.10 2.12 6.36 -2.39 -0.02 2.11 16 36 H 0.37 18.88 7.80 -92.71 -0.72 18.16 16 37 H 0.25 14.74 8.31 -92.70 -0.77 13.97 16 Total: -1.00 -73.66 320.05 2.36 -71.30 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: -0.32 Total: 22.19 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: 6.08 Total: 6.20 kcal Atomic # 7 Polarization: -123.03 SS G_CDS: -5.36 Total: -128.38 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.06 Total: -19.29 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -73.66 2.36 -71.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700322970.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.470 kcal (2) G-P(sol) polarization free energy of solvation -73.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds