Wall clock time and date at job start Mon Mar 30 2020 00:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 C 1.52999 * 109.47114 * 239.99813 * 2 1 3 5 5 C 1.52997 * 109.47080 * 174.99701 * 4 2 1 6 6 C 1.53003 * 109.47411 * 180.02562 * 5 4 2 7 7 N 1.46492 * 109.47475 * 180.02562 * 6 5 4 8 8 C 1.36945 * 120.00229 * 180.02562 * 7 6 5 9 9 H 1.08001 * 119.99459 * 359.97438 * 8 7 6 10 10 C 1.38806 * 120.00047 * 180.02562 * 8 7 6 11 11 N 1.31616 * 119.99828 * 180.02562 * 10 8 7 12 12 Si 1.86803 * 120.00192 * 359.97438 * 10 8 7 13 13 H 1.48493 * 109.47142 * 90.00164 * 12 10 8 14 14 H 1.48502 * 109.47240 * 210.00217 * 12 10 8 15 15 H 1.48501 * 109.47026 * 329.99951 * 12 10 8 16 16 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 17 17 C 1.34777 * 119.99828 * 274.72131 * 16 2 1 18 18 O 1.21623 * 119.99969 * 0.28063 * 17 16 2 19 19 C 1.47233 * 120.00130 * 180.27637 * 17 16 2 20 20 C 1.37009 * 127.19148 * 179.68422 * 19 17 16 21 21 N 1.33313 * 106.37197 * 179.90582 * 20 19 17 22 22 N 1.28512 * 109.44256 * 0.37295 * 21 20 19 23 23 N 1.28717 * 110.63585 * 359.76099 * 22 21 20 24 24 H 0.97002 * 126.03520 * 180.02562 * 23 22 21 25 25 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 27 27 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 28 28 H 1.08997 * 109.47492 * 295.00122 * 4 2 1 29 29 H 1.09007 * 109.47243 * 54.99904 * 4 2 1 30 30 H 1.09002 * 109.47641 * 299.99883 * 5 4 2 31 31 H 1.08998 * 109.46968 * 60.00255 * 5 4 2 32 32 H 1.09002 * 109.46933 * 300.00830 * 6 5 4 33 33 H 1.09007 * 109.47158 * 60.00052 * 6 5 4 34 34 H 0.97002 * 119.99926 * 359.97438 * 7 6 5 35 35 H 0.97002 * 119.99667 * 179.97438 * 11 10 8 36 36 H 0.97001 * 120.00384 * 95.00578 * 16 2 1 37 37 H 1.08003 * 126.81117 * 0.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5647 -0.6133 -1.3137 6 6 4.0748 -1.3340 -2.5632 7 7 5.5348 -1.2311 -2.6247 8 6 6.2186 -1.8045 -3.6634 9 1 5.6814 -2.3330 -4.4371 10 6 7.6020 -1.7075 -3.7213 11 7 8.2591 -2.2582 -4.7199 12 14 8.5311 -0.7940 -2.3827 13 1 8.8913 -1.7401 -1.2963 14 1 9.7676 -0.2022 -2.9539 15 1 7.6731 0.2866 -1.8338 16 7 2.0183 -0.6906 1.1962 17 6 2.1523 -0.0169 2.3557 18 8 1.8630 1.1632 2.4103 19 6 2.6488 -0.7094 3.5564 20 6 2.8466 -0.1711 4.8007 21 7 3.3002 -1.1606 5.5704 22 7 3.3921 -2.2366 4.8739 23 7 3.0154 -2.0257 3.6613 24 1 2.9945 -2.6825 2.9478 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.7516 -1.7715 -1.2056 29 1 1.6053 -0.2618 -2.1370 30 1 3.8532 0.4370 -1.3574 31 1 3.9994 -1.0727 -0.4260 32 1 3.7863 -2.3843 -2.5200 33 1 3.6401 -0.8741 -3.4508 34 1 6.0172 -0.7561 -1.9300 35 1 9.2259 -2.1900 -4.7605 36 1 2.2491 -1.6318 1.1526 37 1 2.6683 0.8514 5.0992 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700664411.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:08 Heat of formation + Delta-G solvation = 59.180382 kcal Electronic energy + Delta-G solvation = -19736.519795 eV Core-core repulsion = 16551.134777 eV Total energy + Delta-G solvation = -3185.385018 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.72765 -40.12463 -37.12089 -35.21684 -34.08845 -32.79282 -31.96132 -31.05485 -29.86694 -26.10921 -24.97533 -23.44819 -22.72736 -21.65718 -21.10339 -20.98891 -19.65402 -17.58679 -17.08329 -16.83337 -16.68302 -15.23027 -15.05852 -14.81881 -14.62719 -14.41588 -14.04344 -13.79860 -13.14709 -12.77044 -12.59292 -12.46145 -12.35432 -11.84262 -11.67911 -11.46332 -11.15914 -11.12664 -11.00590 -10.71274 -10.57039 -10.50281 -10.18315 -9.95241 -9.65574 -9.52769 -8.95822 -7.29936 -5.82705 -3.18756 0.48729 1.92030 2.02278 2.54496 2.68624 3.32496 3.35403 3.41082 3.91596 4.22748 4.45295 4.53662 4.59351 4.75998 4.76533 4.87447 5.18144 5.24370 5.35592 5.45729 5.51253 5.58553 5.67253 5.78290 5.79388 5.92748 5.95921 6.08353 6.13663 6.16592 6.62779 6.66187 6.90478 7.58884 7.86565 7.93151 8.36478 9.15264 9.87765 10.07036 11.35699 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.016922 B = 0.004338 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.248421 B = 6452.701641 C = 7573.329302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.141 3.859 3 H 0.095 0.905 4 C -0.124 4.124 5 C -0.131 4.131 6 C 0.157 3.843 7 N -0.758 5.758 8 C -0.248 4.248 9 H 0.090 0.910 10 C 0.005 3.995 11 N -0.933 5.933 12 Si 0.884 3.116 13 H -0.284 1.284 14 H -0.289 1.289 15 H -0.278 1.278 16 N -0.716 5.716 17 C 0.597 3.403 18 O -0.513 6.513 19 C -0.067 4.067 20 C 0.033 3.967 21 N -0.270 5.270 22 N -0.044 5.044 23 N -0.373 5.373 24 H 0.452 0.548 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.025 0.975 33 H 0.027 0.973 34 H 0.360 0.640 35 H 0.260 0.740 36 H 0.396 0.604 37 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.180 2.505 14.880 22.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.038 3.962 3 H 0.113 0.887 4 C -0.162 4.162 5 C -0.169 4.169 6 C 0.030 3.970 7 N -0.404 5.404 8 C -0.378 4.378 9 H 0.108 0.892 10 C -0.191 4.191 11 N -0.581 5.581 12 Si 0.715 3.285 13 H -0.211 1.211 14 H -0.216 1.216 15 H -0.204 1.204 16 N -0.367 5.367 17 C 0.380 3.620 18 O -0.387 6.387 19 C -0.201 4.201 20 C -0.126 4.126 21 N -0.135 5.135 22 N -0.026 5.026 23 N -0.100 5.100 24 H 0.299 0.701 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.104 0.896 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.043 0.957 33 H 0.045 0.955 34 H 0.193 0.807 35 H 0.070 0.930 36 H 0.230 0.770 37 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -16.826 2.327 15.764 23.174 hybrid contribution 0.588 0.421 -0.428 0.840 sum -16.238 2.748 15.336 22.504 Atomic orbital electron populations 1.22184 0.94807 1.02306 1.02883 1.21185 0.94058 0.97918 0.83056 0.88693 1.21872 0.96618 1.01049 0.96707 1.21806 0.94028 1.01607 0.99454 1.20622 0.84970 0.97041 0.94402 1.42731 1.01689 1.67049 1.28895 1.19066 0.89909 1.27584 1.01197 0.89219 1.24676 0.96186 1.00411 0.97777 1.69700 1.07385 1.49238 1.31795 0.86554 0.79834 0.79954 0.82196 1.21106 1.21568 1.20386 1.46034 1.67025 1.13779 1.09884 1.16741 0.77899 0.86177 0.81213 1.90878 1.49661 1.14221 1.83903 1.22436 1.12600 0.85766 0.99335 1.23939 0.99265 1.01188 0.88233 1.75019 1.16549 0.95949 1.26021 1.78257 1.15102 1.20675 0.88597 1.45630 1.42976 1.09694 1.11733 0.70127 0.92352 0.92092 0.91031 0.91105 0.89586 0.91757 0.92396 0.95710 0.95547 0.80739 0.92983 0.76985 0.77842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.20 9.49 37.16 0.35 -0.85 16 2 C 0.14 1.20 2.58 -67.93 -0.17 1.03 16 3 H 0.10 0.98 7.57 -51.93 -0.39 0.59 16 4 C -0.12 -1.11 4.75 -26.73 -0.13 -1.24 16 5 C -0.13 -1.69 5.22 -26.73 -0.14 -1.83 16 6 C 0.16 2.79 6.26 -4.04 -0.03 2.76 16 7 N -0.76 -17.68 5.41 -59.91 -0.32 -18.00 16 8 C -0.25 -6.98 10.47 -15.06 -0.16 -7.13 16 9 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 10 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 11 N -0.93 -29.22 13.97 55.49 0.78 -28.44 16 12 Si 0.88 22.07 27.74 -169.99 -4.71 17.36 16 13 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 14 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 15 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 16 N -0.72 -5.57 4.53 -54.94 -0.25 -5.82 16 17 C 0.60 5.90 7.78 -12.61 -0.10 5.81 16 18 O -0.51 -6.71 16.58 5.26 0.09 -6.63 16 19 C -0.07 -0.61 7.17 -82.33 -0.59 -1.20 16 20 C 0.03 0.33 11.87 -17.35 -0.21 0.12 16 21 N -0.27 -3.14 12.35 30.47 0.38 -2.77 16 22 N -0.04 -0.47 13.35 60.35 0.81 0.34 16 23 N -0.37 -2.87 6.97 33.31 0.23 -2.64 16 24 H 0.45 1.81 8.32 -190.33 -1.58 0.22 16 25 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.72 7.75 -51.93 -0.40 0.32 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.36 8.24 5.53 -40.82 -0.23 8.01 16 35 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 36 H 0.40 2.11 7.87 -40.82 -0.32 1.79 16 37 H 0.20 1.57 8.06 -52.48 -0.42 1.14 16 LS Contribution 319.29 15.07 4.81 4.81 Total: -1.00 -35.36 319.29 -5.78 -41.15 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -6.32 Total: 3.12 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -1.26 Total: -2.47 kcal Atomic # 7 Polarization: -58.95 SS G_CDS: 1.62 Total: -57.33 kcal Atomic # 8 Polarization: -6.71 SS G_CDS: 0.09 Total: -6.63 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.71 Total: 17.36 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -35.36 -5.78 -41.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700664411.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.328 kcal (2) G-P(sol) polarization free energy of solvation -35.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds