Wall clock time and date at job start Mon Mar 30 2020 00:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 C 1.52999 * 109.47114 * 239.99813 * 2 1 3 5 5 C 1.52997 * 109.47080 * 174.99701 * 4 2 1 6 6 C 1.53003 * 109.47411 * 180.02562 * 5 4 2 7 7 N 1.46492 * 109.47475 * 180.02562 * 6 5 4 8 8 C 1.36945 * 120.00229 * 180.02562 * 7 6 5 9 9 H 1.08001 * 119.99459 * 359.97438 * 8 7 6 10 10 C 1.38806 * 120.00047 * 180.02562 * 8 7 6 11 11 N 1.31616 * 119.99828 * 180.02562 * 10 8 7 12 12 Si 1.86803 * 120.00192 * 359.97438 * 10 8 7 13 13 H 1.48493 * 109.47142 * 90.00164 * 12 10 8 14 14 H 1.48502 * 109.47240 * 210.00217 * 12 10 8 15 15 H 1.48501 * 109.47026 * 329.99951 * 12 10 8 16 16 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 17 17 C 1.34777 * 119.99828 * 274.72131 * 16 2 1 18 18 O 1.21623 * 119.99969 * 0.28063 * 17 16 2 19 19 C 1.47233 * 120.00130 * 180.27637 * 17 16 2 20 20 C 1.37009 * 127.19148 * 179.68422 * 19 17 16 21 21 N 1.33313 * 106.37197 * 179.90582 * 20 19 17 22 22 N 1.28512 * 109.44256 * 0.37295 * 21 20 19 23 23 N 1.28717 * 110.63585 * 359.76099 * 22 21 20 24 24 H 0.97002 * 126.03520 * 180.02562 * 23 22 21 25 25 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 27 27 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 28 28 H 1.08997 * 109.47492 * 295.00122 * 4 2 1 29 29 H 1.09007 * 109.47243 * 54.99904 * 4 2 1 30 30 H 1.09002 * 109.47641 * 299.99883 * 5 4 2 31 31 H 1.08998 * 109.46968 * 60.00255 * 5 4 2 32 32 H 1.09002 * 109.46933 * 300.00830 * 6 5 4 33 33 H 1.09007 * 109.47158 * 60.00052 * 6 5 4 34 34 H 0.97002 * 119.99926 * 359.97438 * 7 6 5 35 35 H 0.97002 * 119.99667 * 179.97438 * 11 10 8 36 36 H 0.97001 * 120.00384 * 95.00578 * 16 2 1 37 37 H 1.08003 * 126.81117 * 0.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5647 -0.6133 -1.3137 6 6 4.0748 -1.3340 -2.5632 7 7 5.5348 -1.2311 -2.6247 8 6 6.2186 -1.8045 -3.6634 9 1 5.6814 -2.3330 -4.4371 10 6 7.6020 -1.7075 -3.7213 11 7 8.2591 -2.2582 -4.7199 12 14 8.5311 -0.7940 -2.3827 13 1 8.8913 -1.7401 -1.2963 14 1 9.7676 -0.2022 -2.9539 15 1 7.6731 0.2866 -1.8338 16 7 2.0183 -0.6906 1.1962 17 6 2.1523 -0.0169 2.3557 18 8 1.8630 1.1632 2.4103 19 6 2.6488 -0.7094 3.5564 20 6 2.8466 -0.1711 4.8007 21 7 3.3002 -1.1606 5.5704 22 7 3.3921 -2.2366 4.8739 23 7 3.0154 -2.0257 3.6613 24 1 2.9945 -2.6825 2.9478 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.7516 -1.7715 -1.2056 29 1 1.6053 -0.2618 -2.1370 30 1 3.8532 0.4370 -1.3574 31 1 3.9994 -1.0727 -0.4260 32 1 3.7863 -2.3843 -2.5200 33 1 3.6401 -0.8741 -3.4508 34 1 6.0172 -0.7561 -1.9300 35 1 9.2259 -2.1900 -4.7605 36 1 2.2491 -1.6318 1.1526 37 1 2.6683 0.8514 5.0992 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700664411.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:07 Heat of formation + Delta-G solvation = 31.149165 kcal Electronic energy + Delta-G solvation = -19737.735320 eV Core-core repulsion = 16551.134777 eV Total energy + Delta-G solvation = -3186.600543 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.46502 -40.90333 -38.09709 -36.70571 -34.91329 -34.16990 -33.11925 -32.22636 -30.97170 -27.39844 -25.80687 -24.48862 -24.01311 -22.65107 -22.32923 -21.72551 -20.37597 -19.64086 -17.83485 -17.59082 -17.43299 -16.63514 -16.05669 -16.04738 -15.75211 -15.40785 -15.28439 -14.95368 -14.57454 -13.93553 -13.61301 -13.52838 -13.35009 -13.10432 -12.86531 -12.51236 -12.43781 -12.14801 -12.06998 -11.89847 -11.88867 -11.78343 -11.56717 -11.36388 -10.99271 -10.72564 -10.24493 -9.31716 -8.06102 -5.39374 -0.24226 1.14459 1.34760 1.37451 1.38799 1.45228 1.86900 1.93502 2.44835 3.23962 3.25830 3.45726 3.60090 3.83394 3.90829 4.04834 4.08243 4.15063 4.38956 4.53749 4.61649 4.81710 4.83802 4.86442 4.89706 4.98794 5.11252 5.27540 5.33245 5.41426 5.46566 5.61368 5.73608 6.18770 6.25330 6.88850 7.05739 7.11532 7.83239 8.00125 9.15568 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.016922 B = 0.004338 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.248421 B = 6452.701641 C = 7573.329302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.145 3.855 3 H 0.077 0.923 4 C -0.113 4.113 5 C -0.120 4.120 6 C 0.150 3.850 7 N -0.763 5.763 8 C -0.238 4.238 9 H 0.058 0.942 10 C -0.063 4.063 11 N -0.984 5.984 12 Si 0.954 3.046 13 H -0.277 1.277 14 H -0.296 1.296 15 H -0.254 1.254 16 N -0.704 5.704 17 C 0.601 3.399 18 O -0.548 6.548 19 C -0.064 4.064 20 C 0.026 3.974 21 N -0.298 5.298 22 N -0.060 5.060 23 N -0.350 5.350 24 H 0.467 0.533 25 H 0.072 0.928 26 H 0.047 0.953 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.031 0.969 33 H 0.022 0.978 34 H 0.364 0.636 35 H 0.258 0.742 36 H 0.411 0.589 37 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.341 2.752 16.091 24.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.042 3.958 3 H 0.095 0.905 4 C -0.151 4.151 5 C -0.158 4.158 6 C 0.024 3.976 7 N -0.409 5.409 8 C -0.369 4.369 9 H 0.076 0.924 10 C -0.254 4.254 11 N -0.634 5.634 12 Si 0.781 3.219 13 H -0.203 1.203 14 H -0.223 1.223 15 H -0.179 1.179 16 N -0.356 5.356 17 C 0.385 3.615 18 O -0.424 6.424 19 C -0.199 4.199 20 C -0.134 4.134 21 N -0.162 5.162 22 N -0.043 5.043 23 N -0.081 5.081 24 H 0.318 0.682 25 H 0.091 0.909 26 H 0.066 0.934 27 H 0.099 0.901 28 H 0.109 0.891 29 H 0.112 0.888 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.049 0.951 33 H 0.041 0.959 34 H 0.197 0.803 35 H 0.067 0.933 36 H 0.247 0.753 37 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -18.037 2.534 16.985 24.905 hybrid contribution 0.850 0.286 -0.911 1.279 sum -17.186 2.820 16.074 23.700 Atomic orbital electron populations 1.22128 0.93524 1.03226 1.02735 1.21101 0.94944 0.96974 0.82817 0.90452 1.21787 0.93530 1.02550 0.97229 1.21695 0.96697 1.00292 0.97096 1.20874 0.81921 0.98013 0.96753 1.42809 1.03924 1.66565 1.27610 1.19085 0.90162 1.26291 1.01330 0.92415 1.25504 0.97320 1.02136 1.00480 1.69880 1.07543 1.51606 1.34393 0.85426 0.78138 0.79176 0.79120 1.20324 1.22252 1.17884 1.45953 1.66092 1.14417 1.09108 1.16742 0.77452 0.85708 0.81638 1.90869 1.51323 1.15729 1.84433 1.22303 1.12590 0.86110 0.98894 1.24285 0.98926 1.01715 0.88444 1.75003 1.17682 0.96543 1.26955 1.78200 1.15866 1.20692 0.89504 1.45593 1.41400 1.09598 1.11473 0.68196 0.90870 0.93368 0.90119 0.89064 0.88816 0.92615 0.91586 0.95120 0.95949 0.80293 0.93284 0.75298 0.76471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 9.49 71.98 0.68 -1.18 16 2 C 0.15 2.06 2.58 44.99 0.12 2.18 16 3 H 0.08 1.44 7.57 -2.39 -0.02 1.42 16 4 C -0.11 -1.63 4.75 30.59 0.15 -1.48 16 5 C -0.12 -2.75 5.22 30.59 0.16 -2.59 16 6 C 0.15 5.03 6.26 86.38 0.54 5.57 16 7 N -0.76 -34.40 5.41 -343.45 -1.86 -36.25 16 8 C -0.24 -13.40 10.47 84.03 0.88 -12.52 16 9 H 0.06 3.55 8.06 -2.91 -0.02 3.53 16 10 C -0.06 -3.68 5.50 84.86 0.47 -3.21 16 11 N -0.98 -62.74 13.97 21.65 0.30 -62.44 16 12 Si 0.95 45.13 27.74 68.60 1.90 47.03 16 13 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 14 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 15 H -0.25 -10.89 6.52 99.48 0.65 -10.24 16 16 N -0.70 -8.93 4.53 -445.99 -2.02 -10.95 16 17 C 0.60 10.68 7.78 86.61 0.67 11.36 16 18 O -0.55 -13.63 16.58 -4.10 -0.07 -13.70 16 19 C -0.06 -1.04 7.17 40.41 0.29 -0.75 16 20 C 0.03 0.49 11.87 84.18 1.00 1.49 16 21 N -0.30 -6.63 12.35 -57.50 -0.71 -7.34 16 22 N -0.06 -1.20 13.35 37.02 0.49 -0.71 16 23 N -0.35 -4.63 6.97 -48.52 -0.34 -4.97 16 24 H 0.47 2.43 8.32 -219.89 -1.83 0.60 16 25 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 26 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 30 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.07 1.42 7.75 -2.39 -0.02 1.40 16 32 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 34 H 0.36 15.72 5.53 -92.71 -0.51 15.21 16 35 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 36 H 0.41 2.87 7.87 -92.71 -0.73 2.14 16 37 H 0.22 3.14 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -77.00 319.29 0.64 -76.36 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -2.02 Total: 14.11 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: 4.95 Total: -1.14 kcal Atomic # 7 Polarization: -118.53 SS G_CDS: -4.13 Total: -122.66 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.07 Total: -13.70 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.90 Total: 47.03 kcal Total: -77.00 0.64 -76.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700664411.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.506 kcal (2) G-P(sol) polarization free energy of solvation -77.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds