Wall clock time and date at job start Mon Mar 30 2020 00:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 5 5 C 1.53003 * 109.46807 * 184.99648 * 4 2 1 6 6 C 1.53004 * 109.46807 * 179.97438 * 5 4 2 7 7 N 1.46499 * 109.46960 * 180.02562 * 6 5 4 8 8 C 1.36938 * 119.99967 * 179.97438 * 7 6 5 9 9 H 1.08001 * 119.99692 * 0.02562 * 8 7 6 10 10 C 1.38815 * 120.00016 * 179.97438 * 8 7 6 11 11 N 1.31615 * 119.99844 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99729 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47011 * 60.00822 * 12 10 8 14 14 H 1.48500 * 109.46798 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47377 * 300.00366 * 12 10 8 16 16 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 17 17 C 1.34777 * 119.99828 * 84.72116 * 16 2 1 18 18 O 1.21553 * 119.99924 * 0.28083 * 17 16 2 19 19 C 1.47873 * 120.00239 * 180.27771 * 17 16 2 20 20 N 1.34544 * 126.04993 * 180.02562 * 19 17 16 21 21 C 1.30867 * 107.26866 * 179.97438 * 20 19 17 22 22 N 1.34582 * 107.62651 * 0.02562 * 21 20 19 23 23 H 0.97004 * 125.74959 * 180.02562 * 22 21 20 24 24 N 1.28849 * 108.50193 * 359.72999 * 22 21 20 25 25 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 27 27 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 28 28 H 1.08993 * 109.47108 * 304.99684 * 4 2 1 29 29 H 1.08998 * 109.47048 * 65.00196 * 4 2 1 30 30 H 1.08988 * 109.47304 * 300.00405 * 5 4 2 31 31 H 1.08998 * 109.46869 * 60.00439 * 5 4 2 32 32 H 1.09002 * 109.47337 * 300.00120 * 6 5 4 33 33 H 1.08998 * 109.47048 * 60.00548 * 6 5 4 34 34 H 0.97002 * 120.00258 * 0.02562 * 7 6 5 35 35 H 0.97003 * 120.00168 * 180.02562 * 11 10 8 36 36 H 0.97001 * 120.00384 * 265.00562 * 16 2 1 37 37 H 1.08000 * 126.18731 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5649 -0.6134 1.3136 6 6 4.0748 -1.3341 2.5632 7 7 5.5348 -1.2303 2.6252 8 6 6.2185 -1.8035 3.6640 9 1 5.6814 -2.3325 4.4373 10 6 7.6020 -1.7056 3.7224 11 7 8.2565 -1.0613 2.7796 12 14 8.5346 -2.4882 5.1391 13 1 8.2777 -3.9507 5.1529 14 1 9.9893 -2.2423 4.9698 15 1 8.0783 -1.8932 6.4209 16 7 2.0184 -0.6906 -1.1962 17 6 2.1417 -0.0196 -2.3585 18 8 1.8527 1.1598 -2.4130 19 6 2.6288 -0.7180 -3.5674 20 7 2.7982 -0.1699 -4.7844 21 6 3.2423 -1.1122 -5.5765 22 7 3.3462 -2.2401 -4.8498 23 1 3.6513 -3.1001 -5.1787 24 7 2.9782 -1.9836 -3.6419 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.6054 -0.2618 2.1369 29 1 1.7517 -1.7715 1.2056 30 1 3.9994 -1.0728 0.4259 31 1 3.8532 0.4369 1.3573 32 1 3.6402 -0.8742 3.4508 33 1 3.7865 -2.3844 2.5200 34 1 6.0172 -0.7548 1.9308 35 1 9.2233 -0.9932 2.8202 36 1 2.2490 -1.6318 -1.1527 37 1 3.4813 -1.0044 -6.6242 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700680294.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:17 Heat of formation + Delta-G solvation = 50.718720 kcal Electronic energy + Delta-G solvation = -19604.860569 eV Core-core repulsion = 16419.108626 eV Total energy + Delta-G solvation = -3185.751943 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.71936 -39.69919 -36.73237 -34.82103 -33.65866 -32.80394 -31.86812 -30.70808 -29.32970 -25.73737 -24.95789 -23.26673 -22.86372 -21.10629 -20.73399 -20.48724 -19.14648 -17.56252 -16.97927 -16.61146 -16.29654 -15.16882 -14.80941 -14.61361 -14.53385 -14.02959 -13.70057 -13.44077 -12.97239 -12.66924 -12.47870 -12.17405 -12.06180 -11.28490 -11.13955 -10.97544 -10.82355 -10.77315 -10.76418 -10.45415 -10.37740 -10.20513 -10.01234 -9.99683 -9.65155 -9.11894 -8.82771 -6.87733 -5.72509 -3.01130 1.12158 1.89628 2.32541 2.83802 3.27120 3.46106 3.49976 3.51494 4.04744 4.20187 4.57872 4.63364 4.81306 5.07106 5.19653 5.46918 5.59008 5.61186 5.67028 5.67813 5.82220 5.94921 6.00717 6.11130 6.15470 6.25114 6.37997 6.40435 6.46260 6.47839 6.91992 6.95155 7.32274 7.72437 7.74480 8.10617 8.46608 9.57144 10.16938 10.51217 11.50504 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.018940 B = 0.003768 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.997674 B = 7429.240346 C = 8482.912406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.142 3.858 3 H 0.093 0.907 4 C -0.122 4.122 5 C -0.127 4.127 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.240 4.240 9 H 0.069 0.931 10 C -0.015 4.015 11 N -0.935 5.935 12 Si 0.908 3.092 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.286 1.286 16 N -0.703 5.703 17 C 0.614 3.386 18 O -0.512 6.512 19 C 0.153 3.847 20 N -0.463 5.463 21 C 0.195 3.805 22 N -0.398 5.398 23 H 0.452 0.548 24 N -0.273 5.273 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.017 0.983 33 H 0.017 0.983 34 H 0.383 0.617 35 H 0.255 0.745 36 H 0.408 0.592 37 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.728 -3.437 -16.282 22.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.038 3.962 3 H 0.111 0.889 4 C -0.161 4.161 5 C -0.165 4.165 6 C 0.026 3.974 7 N -0.379 5.379 8 C -0.371 4.371 9 H 0.087 0.913 10 C -0.211 4.211 11 N -0.583 5.583 12 Si 0.739 3.261 13 H -0.213 1.213 14 H -0.217 1.217 15 H -0.213 1.213 16 N -0.356 5.356 17 C 0.396 3.604 18 O -0.384 6.384 19 C -0.128 4.128 20 N -0.187 5.187 21 C -0.103 4.103 22 N -0.121 5.121 23 H 0.299 0.701 24 N -0.114 5.114 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.100 0.900 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.035 0.965 33 H 0.034 0.966 34 H 0.217 0.783 35 H 0.065 0.935 36 H 0.243 0.757 37 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -15.053 -2.557 -15.614 21.838 hybrid contribution 1.272 -1.404 -0.078 1.896 sum -13.781 -3.960 -15.692 21.256 Atomic orbital electron populations 1.22187 0.95162 1.02174 1.02628 1.21144 0.93794 0.97907 0.83312 0.88923 1.21853 0.96931 1.00869 0.96409 1.21748 0.93637 1.01545 0.99582 1.20647 0.86152 0.96445 0.94201 1.42384 1.00256 1.66250 1.28992 1.19211 0.89466 1.27162 1.01273 0.91259 1.24747 0.96439 1.01261 0.98638 1.69658 1.07222 1.47029 1.34430 0.86258 0.78972 0.78945 0.81970 1.21303 1.21689 1.21258 1.45861 1.66426 1.14609 1.08700 1.16282 0.77899 0.85497 0.80768 1.90827 1.49062 1.14467 1.84026 1.23919 1.05747 0.87881 0.95260 1.71308 1.17006 1.29904 1.00487 1.26751 1.00616 0.81920 1.01016 1.45136 1.46786 1.13966 1.06192 0.70112 1.74288 1.16630 1.18183 1.02347 0.92406 0.91258 0.92186 0.89993 0.91276 0.92014 0.91853 0.96467 0.96562 0.78333 0.93501 0.75652 0.75294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.48 37.16 0.35 -1.32 16 2 C 0.14 1.72 2.57 -67.93 -0.17 1.54 16 3 H 0.09 1.28 7.58 -51.93 -0.39 0.88 16 4 C -0.12 -1.48 4.75 -26.73 -0.13 -1.61 16 5 C -0.13 -2.08 5.22 -26.73 -0.14 -2.22 16 6 C 0.15 3.14 6.26 -4.04 -0.03 3.11 16 7 N -0.73 -19.39 5.60 -59.91 -0.34 -19.73 16 8 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 9 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 10 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 11 N -0.93 -29.03 13.06 55.49 0.72 -28.30 16 12 Si 0.91 22.78 29.55 -169.99 -5.02 17.76 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 14 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 15 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 16 N -0.70 -8.84 4.53 -54.74 -0.25 -9.09 16 17 C 0.61 9.25 7.79 -12.32 -0.10 9.15 16 18 O -0.51 -9.30 16.76 5.32 0.09 -9.22 16 19 C 0.15 2.09 7.96 -156.36 -1.24 0.85 16 20 N -0.46 -5.99 11.41 -12.37 -0.14 -6.13 16 21 C 0.19 1.41 13.14 -90.49 -1.19 0.22 16 22 N -0.40 -2.71 6.93 29.56 0.20 -2.50 16 23 H 0.45 1.05 8.96 -190.21 -1.71 -0.66 16 24 N -0.27 -3.03 11.98 32.07 0.38 -2.64 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.06 1.05 7.75 -51.94 -0.40 0.64 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.38 10.68 7.67 -40.82 -0.31 10.37 16 35 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 36 H 0.41 4.61 8.30 -40.82 -0.34 4.27 16 37 H 0.23 0.39 8.06 -52.49 -0.42 -0.04 16 LS Contribution 323.41 15.07 4.87 4.87 Total: -1.00 -37.99 323.41 -8.87 -46.86 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -6.50 Total: 6.03 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: -2.89 Total: 2.10 kcal Atomic # 7 Polarization: -68.99 SS G_CDS: 0.59 Total: -68.40 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.22 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -37.99 -8.87 -46.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700680294.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.574 kcal (2) G-P(sol) polarization free energy of solvation -37.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds