Wall clock time and date at job start Mon Mar 30 2020 00:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 5 5 C 1.53003 * 109.46807 * 184.99648 * 4 2 1 6 6 C 1.53004 * 109.46807 * 179.97438 * 5 4 2 7 7 N 1.46499 * 109.46960 * 180.02562 * 6 5 4 8 8 C 1.36938 * 119.99967 * 179.97438 * 7 6 5 9 9 H 1.08001 * 119.99692 * 0.02562 * 8 7 6 10 10 C 1.38815 * 120.00016 * 179.97438 * 8 7 6 11 11 N 1.31615 * 119.99844 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99729 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47011 * 60.00822 * 12 10 8 14 14 H 1.48500 * 109.46798 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47377 * 300.00366 * 12 10 8 16 16 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 17 17 C 1.34777 * 119.99828 * 84.72116 * 16 2 1 18 18 O 1.21553 * 119.99924 * 0.28083 * 17 16 2 19 19 C 1.47873 * 120.00239 * 180.27771 * 17 16 2 20 20 N 1.34544 * 126.04993 * 180.02562 * 19 17 16 21 21 C 1.30867 * 107.26866 * 179.97438 * 20 19 17 22 22 N 1.34582 * 107.62651 * 0.02562 * 21 20 19 23 23 H 0.97004 * 125.74959 * 180.02562 * 22 21 20 24 24 N 1.28849 * 108.50193 * 359.72999 * 22 21 20 25 25 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 27 27 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 28 28 H 1.08993 * 109.47108 * 304.99684 * 4 2 1 29 29 H 1.08998 * 109.47048 * 65.00196 * 4 2 1 30 30 H 1.08988 * 109.47304 * 300.00405 * 5 4 2 31 31 H 1.08998 * 109.46869 * 60.00439 * 5 4 2 32 32 H 1.09002 * 109.47337 * 300.00120 * 6 5 4 33 33 H 1.08998 * 109.47048 * 60.00548 * 6 5 4 34 34 H 0.97002 * 120.00258 * 0.02562 * 7 6 5 35 35 H 0.97003 * 120.00168 * 180.02562 * 11 10 8 36 36 H 0.97001 * 120.00384 * 265.00562 * 16 2 1 37 37 H 1.08000 * 126.18731 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5649 -0.6134 1.3136 6 6 4.0748 -1.3341 2.5632 7 7 5.5348 -1.2303 2.6252 8 6 6.2185 -1.8035 3.6640 9 1 5.6814 -2.3325 4.4373 10 6 7.6020 -1.7056 3.7224 11 7 8.2565 -1.0613 2.7796 12 14 8.5346 -2.4882 5.1391 13 1 8.2777 -3.9507 5.1529 14 1 9.9893 -2.2423 4.9698 15 1 8.0783 -1.8932 6.4209 16 7 2.0184 -0.6906 -1.1962 17 6 2.1417 -0.0196 -2.3585 18 8 1.8527 1.1598 -2.4130 19 6 2.6288 -0.7180 -3.5674 20 7 2.7982 -0.1699 -4.7844 21 6 3.2423 -1.1122 -5.5765 22 7 3.3462 -2.2401 -4.8498 23 1 3.6513 -3.1001 -5.1787 24 7 2.9782 -1.9836 -3.6419 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.6054 -0.2618 2.1369 29 1 1.7517 -1.7715 1.2056 30 1 3.9994 -1.0728 0.4259 31 1 3.8532 0.4369 1.3573 32 1 3.6402 -0.8742 3.4508 33 1 3.7865 -2.3844 2.5200 34 1 6.0172 -0.7548 1.9308 35 1 9.2233 -0.9932 2.8202 36 1 2.2490 -1.6318 -1.1527 37 1 3.4813 -1.0044 -6.6242 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700680294.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:16 Heat of formation + Delta-G solvation = 21.936551 kcal Electronic energy + Delta-G solvation = -19606.108658 eV Core-core repulsion = 16419.108626 eV Total energy + Delta-G solvation = -3187.000032 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.47091 -40.79867 -37.98792 -36.53768 -34.45267 -34.28847 -33.14754 -31.93603 -30.74979 -27.24992 -26.02900 -24.70828 -23.87910 -22.44900 -21.94430 -21.53138 -19.85055 -19.12512 -18.49078 -17.47209 -17.30661 -16.65649 -15.96887 -15.83464 -15.78755 -15.34560 -15.29575 -15.02515 -14.43961 -13.86517 -13.44163 -13.24180 -13.18662 -13.01743 -12.73364 -12.39799 -12.28283 -12.09600 -11.87039 -11.79259 -11.75681 -11.59886 -11.49824 -11.33193 -10.92178 -10.79833 -10.17237 -9.00998 -7.95636 -5.25388 0.24994 1.15449 1.46674 1.50676 1.56834 1.64807 2.04710 2.24622 2.56093 3.20421 3.37915 3.52151 3.64979 3.96272 4.06602 4.11383 4.28370 4.40509 4.59155 4.67249 4.84000 4.86783 4.86904 4.91352 5.00003 5.11748 5.25232 5.32772 5.33834 5.43275 5.50257 5.51456 5.93380 6.26510 6.34102 6.93890 7.09211 7.31812 8.09253 8.31424 9.28184 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.018940 B = 0.003768 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.997674 B = 7429.240346 C = 8482.912406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.142 3.858 3 H 0.071 0.929 4 C -0.108 4.108 5 C -0.115 4.115 6 C 0.150 3.850 7 N -0.752 5.752 8 C -0.250 4.250 9 H 0.078 0.922 10 C -0.078 4.078 11 N -0.973 5.973 12 Si 0.978 3.022 13 H -0.275 1.275 14 H -0.295 1.295 15 H -0.277 1.277 16 N -0.693 5.693 17 C 0.609 3.391 18 O -0.557 6.557 19 C 0.121 3.879 20 N -0.516 5.516 21 C 0.219 3.781 22 N -0.379 5.379 23 H 0.473 0.527 24 N -0.278 5.278 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.043 0.957 28 H 0.099 0.901 29 H 0.089 0.911 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.023 0.977 33 H 0.026 0.974 34 H 0.371 0.629 35 H 0.251 0.749 36 H 0.415 0.585 37 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.488 -5.256 -16.425 23.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.039 3.961 3 H 0.089 0.911 4 C -0.146 4.146 5 C -0.153 4.153 6 C 0.024 3.976 7 N -0.394 5.394 8 C -0.381 4.381 9 H 0.096 0.904 10 C -0.270 4.270 11 N -0.624 5.624 12 Si 0.806 3.194 13 H -0.201 1.201 14 H -0.221 1.221 15 H -0.203 1.203 16 N -0.345 5.345 17 C 0.391 3.609 18 O -0.432 6.432 19 C -0.159 4.159 20 N -0.241 5.241 21 C -0.078 4.078 22 N -0.105 5.105 23 H 0.324 0.676 24 N -0.121 5.121 25 H 0.092 0.908 26 H 0.105 0.895 27 H 0.062 0.938 28 H 0.117 0.883 29 H 0.108 0.892 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.041 0.959 33 H 0.044 0.956 34 H 0.202 0.798 35 H 0.060 0.940 36 H 0.252 0.748 37 H 0.300 0.700 Dipole moment (debyes) X Y Z Total from point charges -15.851 -4.447 -15.745 22.780 hybrid contribution 1.494 -0.901 -0.123 1.749 sum -14.358 -5.348 -15.868 22.057 Atomic orbital electron populations 1.22113 0.93232 1.03250 1.02705 1.21150 0.95218 0.96735 0.83044 0.91111 1.21762 0.93460 1.02353 0.97026 1.21610 0.96630 0.99811 0.97250 1.20858 0.83119 0.97415 0.96171 1.42669 1.02627 1.65970 1.28165 1.19674 0.90096 1.26565 1.01801 0.90393 1.25641 0.97499 1.02389 1.01476 1.69833 1.07095 1.48882 1.36580 0.85153 0.76995 0.78415 0.78860 1.20078 1.22140 1.20264 1.45850 1.65595 1.14786 1.08313 1.16607 0.77358 0.85175 0.81733 1.90782 1.51272 1.16263 1.84886 1.23658 1.08039 0.88829 0.95327 1.71241 1.19335 1.32519 1.01028 1.27688 0.97453 0.80465 1.02212 1.45169 1.45335 1.15067 1.04930 0.67586 1.74182 1.16507 1.17070 1.04374 0.90769 0.89539 0.93765 0.88292 0.89246 0.92905 0.93407 0.95918 0.95610 0.79816 0.94003 0.74832 0.69978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 9.48 71.98 0.68 -2.28 16 2 C 0.14 3.36 2.57 44.99 0.12 3.48 16 3 H 0.07 2.01 7.58 -2.39 -0.02 2.00 16 4 C -0.11 -2.43 4.75 30.60 0.15 -2.28 16 5 C -0.11 -3.72 5.22 30.60 0.16 -3.56 16 6 C 0.15 6.03 6.26 86.38 0.54 6.57 16 7 N -0.75 -39.89 5.60 -343.44 -1.92 -41.81 16 8 C -0.25 -14.35 9.99 84.03 0.84 -13.51 16 9 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 10 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 11 N -0.97 -61.32 13.06 21.65 0.28 -61.04 16 12 Si 0.98 46.70 29.55 68.60 2.03 48.72 16 13 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 14 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 15 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 16 N -0.69 -17.52 4.53 -445.38 -2.02 -19.53 16 17 C 0.61 19.01 7.79 86.79 0.68 19.69 16 18 O -0.56 -21.37 16.76 -3.88 -0.07 -21.44 16 19 C 0.12 3.36 7.96 137.13 1.09 4.45 16 20 N -0.52 -13.19 11.41 -193.04 -2.20 -15.40 16 21 C 0.22 2.66 13.14 180.30 2.37 5.03 16 22 N -0.38 -4.33 6.93 -60.38 -0.42 -4.75 16 23 H 0.47 0.83 8.96 -219.79 -1.97 -1.14 16 24 N -0.28 -5.92 11.98 -52.44 -0.63 -6.55 16 25 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.05 1.79 7.75 -2.39 -0.02 1.77 16 31 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.37 21.15 7.67 -92.71 -0.71 20.44 16 35 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 36 H 0.41 9.17 8.30 -92.71 -0.77 8.40 16 37 H 0.29 -0.24 8.06 -2.91 -0.02 -0.26 16 Total: -1.00 -84.78 323.41 -0.20 -84.98 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: -2.34 Total: 23.36 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: 7.09 Total: 13.45 kcal Atomic # 7 Polarization: -142.17 SS G_CDS: -6.91 Total: -149.08 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -0.07 Total: -21.44 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.72 kcal Total: -84.78 -0.20 -84.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700680294.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.916 kcal (2) G-P(sol) polarization free energy of solvation -84.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds