Wall clock time and date at job start Mon Mar 30 2020 00:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46495 * 109.47615 * 2 1 4 4 C 1.36940 * 119.99795 * 275.30774 * 3 2 1 5 5 H 1.08004 * 119.99985 * 37.58022 * 4 3 2 6 6 C 1.38810 * 120.00295 * 217.57310 * 4 3 2 7 7 N 1.31621 * 119.99638 * 21.43181 * 6 4 3 8 8 Si 1.86801 * 120.00273 * 201.43783 * 6 4 3 9 9 H 1.48503 * 109.46963 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47346 * 119.99936 * 8 6 4 11 11 H 1.48504 * 109.46631 * 239.99766 * 8 6 4 12 12 C 1.46497 * 120.00518 * 95.30429 * 3 2 1 13 13 C 1.53002 * 109.47302 * 270.00818 * 12 3 2 14 14 C 1.52999 * 109.47156 * 180.02562 * 13 12 3 15 15 N 1.46501 * 109.47003 * 179.97438 * 14 13 12 16 16 C 1.34777 * 119.99965 * 179.97438 * 15 14 13 17 17 O 1.21555 * 120.00148 * 359.97438 * 16 15 14 18 18 C 1.47870 * 120.00088 * 180.02562 * 16 15 14 19 19 N 1.34544 * 126.05025 * 180.02562 * 18 16 15 20 20 C 1.30869 * 107.27234 * 180.02562 * 19 18 16 21 21 N 1.34586 * 107.62396 * 359.97438 * 20 19 18 22 22 H 0.96998 * 125.74529 * 179.74115 * 21 20 19 23 23 N 1.28849 * 108.50396 * 0.02562 * 21 20 19 24 24 H 1.09003 * 109.46648 * 60.00258 * 1 2 3 25 25 H 1.09001 * 109.47428 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47464 * 300.00800 * 1 2 3 27 27 H 1.09003 * 109.47088 * 239.99314 * 2 1 3 28 28 H 1.09003 * 109.47137 * 119.99945 * 2 1 3 29 29 H 0.97004 * 119.99827 * 180.02562 * 7 6 4 30 30 H 1.08996 * 109.47589 * 150.00148 * 12 3 2 31 31 H 1.08998 * 109.46761 * 29.99917 * 12 3 2 32 32 H 1.08996 * 109.47345 * 59.99181 * 13 12 3 33 33 H 1.09005 * 109.46843 * 299.99850 * 13 12 3 34 34 H 1.08996 * 109.47689 * 59.99359 * 14 13 12 35 35 H 1.08998 * 109.46807 * 299.99038 * 14 13 12 36 36 H 0.97003 * 120.00275 * 359.97438 * 15 14 13 37 37 H 1.08002 * 126.18782 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1432 2.0632 -1.1809 5 1 1.4106 1.9277 -1.9628 6 6 3.2113 2.9288 -1.3729 7 7 4.3028 2.7978 -0.6491 8 14 3.0994 4.2795 -2.6584 9 1 1.7777 4.2134 -3.3321 10 1 3.2552 5.6022 -2.0016 11 1 4.1768 4.0962 -3.6639 12 6 2.3732 2.0327 1.2632 13 6 1.1426 2.7383 1.8365 14 6 1.5133 3.4193 3.1554 15 7 0.3351 4.0954 3.7040 16 6 0.4249 4.7666 4.8693 17 8 1.4834 4.8106 5.4654 18 6 -0.7645 5.4485 5.4233 19 7 -0.8123 6.1500 6.5704 20 6 -2.0372 6.5907 6.7055 21 7 -2.7438 6.1624 5.6432 22 1 -3.6840 6.3369 5.4804 23 7 -1.9626 5.4765 4.8819 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5140 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 5.0490 3.4030 -0.7831 30 1 3.1617 2.7641 1.0859 31 1 2.7254 1.2834 1.9721 32 1 0.3541 2.0069 2.0137 33 1 0.7903 3.4876 1.1275 34 1 2.3017 4.1507 2.9777 35 1 1.8658 2.6703 3.8645 36 1 -0.5097 4.0600 3.2285 37 1 -2.4129 7.1897 7.5219 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707464676.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:36 Heat of formation + Delta-G solvation = 66.078632 kcal Electronic energy + Delta-G solvation = -19849.629773 eV Core-core repulsion = 16664.543885 eV Total energy + Delta-G solvation = -3185.085887 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.70239 -39.27470 -36.41604 -34.81217 -33.63891 -32.12191 -31.82911 -30.85342 -28.51914 -25.88717 -24.35988 -23.40964 -22.88065 -21.01144 -20.52784 -19.96768 -19.07662 -17.31215 -16.69797 -16.58902 -15.66127 -15.26849 -15.00511 -14.76174 -13.99954 -13.95874 -13.40969 -13.29837 -12.57815 -12.46027 -12.34155 -11.57680 -11.41955 -11.14319 -11.01938 -10.95228 -10.75649 -10.73286 -10.56220 -10.42210 -10.14856 -9.99001 -9.94907 -9.62963 -9.50558 -8.85063 -8.44923 -6.53851 -5.75899 -3.35172 1.15118 1.93998 2.33958 2.99748 3.36748 3.37269 3.45847 3.47722 4.12618 4.22795 4.49824 4.71557 5.27779 5.42310 5.68301 5.69709 5.85438 5.98350 6.01700 6.11493 6.29246 6.38186 6.39432 6.45765 6.48326 6.61312 6.77564 6.79303 6.94087 7.12648 7.20756 7.48184 7.71185 7.82093 7.85443 8.25958 8.55301 9.22580 9.84916 10.43746 11.23488 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.020830 B = 0.004069 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.863531 B = 6879.461835 C = 7297.635920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.140 3.860 3 N -0.585 5.585 4 C -0.260 4.260 5 H 0.059 0.941 6 C 0.013 3.987 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.290 1.290 12 C 0.151 3.849 13 C -0.147 4.147 14 C 0.121 3.879 15 N -0.706 5.706 16 C 0.606 3.394 17 O -0.513 6.513 18 C 0.157 3.843 19 N -0.463 5.463 20 C 0.193 3.807 21 N -0.400 5.400 22 H 0.451 0.549 23 N -0.277 5.277 24 H 0.048 0.952 25 H 0.034 0.966 26 H 0.043 0.957 27 H 0.042 0.958 28 H 0.033 0.967 29 H 0.254 0.746 30 H 0.096 0.904 31 H 0.026 0.974 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.406 0.594 37 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.647 5.264 11.870 20.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.014 3.986 3 N -0.305 5.305 4 C -0.390 4.390 5 H 0.077 0.923 6 C -0.187 4.187 7 N -0.528 5.528 8 Si 0.723 3.277 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.216 1.216 12 C 0.024 3.976 13 C -0.187 4.187 14 C -0.002 4.002 15 N -0.358 5.358 16 C 0.386 3.614 17 O -0.385 6.385 18 C -0.124 4.124 19 N -0.187 5.187 20 C -0.105 4.105 21 N -0.123 5.123 22 H 0.298 0.702 23 N -0.118 5.118 24 H 0.067 0.933 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.113 0.887 31 H 0.044 0.956 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.241 0.759 37 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -14.336 5.042 11.918 19.313 hybrid contribution -1.411 1.157 -0.708 1.957 sum -15.747 6.199 11.210 20.300 Atomic orbital electron populations 1.22372 1.00195 0.98862 1.01131 1.20845 0.91651 0.87397 0.98721 1.43749 1.76040 1.08201 1.02502 1.19020 1.04649 1.21202 0.94155 0.92311 1.25180 0.94215 1.01279 0.98029 1.70009 1.03209 1.37210 1.42345 0.86382 0.77636 0.82389 0.81297 1.20129 1.21402 1.21644 1.20796 0.94374 0.96686 0.85766 1.22559 1.02488 0.99954 0.93748 1.21600 0.86552 0.96232 0.95811 1.45967 1.15311 1.52476 1.22051 1.16359 0.84753 0.78860 0.81406 1.90838 1.27707 1.60332 1.59598 1.24052 0.92660 1.02870 0.92813 1.71321 1.18059 1.12571 1.16749 1.26754 0.87808 1.01381 0.94539 1.45135 1.13591 1.37038 1.16562 0.70250 1.74298 1.02844 1.14558 1.20090 0.93283 0.94664 0.93769 0.93911 0.94810 0.93548 0.88682 0.95559 0.92905 0.91580 0.91006 0.91476 0.75944 0.75341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.98 10.21 37.16 0.38 -2.60 16 2 C 0.14 2.95 6.44 -4.05 -0.03 2.92 16 3 N -0.58 -14.26 2.43 -173.24 -0.42 -14.68 16 4 C -0.26 -7.01 9.45 -15.06 -0.14 -7.15 16 5 H 0.06 1.59 7.92 -52.48 -0.42 1.17 16 6 C 0.01 0.37 4.95 -17.43 -0.09 0.28 16 7 N -0.89 -25.32 11.47 55.49 0.64 -24.68 16 8 Si 0.89 21.41 29.60 -169.99 -5.03 16.38 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 12 C 0.15 3.42 5.33 -4.04 -0.02 3.40 16 13 C -0.15 -2.74 5.65 -26.73 -0.15 -2.89 16 14 C 0.12 2.08 5.67 -4.04 -0.02 2.06 16 15 N -0.71 -10.93 5.55 -61.24 -0.34 -11.27 16 16 C 0.61 10.31 7.83 -12.32 -0.10 10.21 16 17 O -0.51 -10.52 17.09 5.32 0.09 -10.43 16 18 C 0.16 2.28 7.96 -156.35 -1.24 1.03 16 19 N -0.46 -6.20 11.41 -12.36 -0.14 -6.34 16 20 C 0.19 1.41 13.14 -90.48 -1.19 0.22 16 21 N -0.40 -2.69 6.93 29.57 0.20 -2.48 16 22 H 0.45 0.89 8.96 -190.21 -1.71 -0.81 16 23 N -0.28 -3.15 11.98 32.07 0.38 -2.77 16 24 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.04 0.77 6.64 -51.93 -0.34 0.42 16 27 H 0.04 0.93 8.08 -51.93 -0.42 0.51 16 28 H 0.03 0.67 7.83 -51.93 -0.41 0.26 16 29 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.10 2.46 5.52 -51.93 -0.29 2.18 16 31 H 0.03 0.57 7.86 -51.93 -0.41 0.16 16 32 H 0.05 0.93 6.64 -51.93 -0.34 0.58 16 33 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.41 5.51 8.17 -40.82 -0.33 5.18 16 37 H 0.23 0.36 8.06 -52.49 -0.42 -0.06 16 LS Contribution 319.15 15.07 4.81 4.81 Total: -1.00 -35.03 319.15 -8.75 -43.78 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -6.34 Total: 0.21 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: -2.60 Total: 7.48 kcal Atomic # 7 Polarization: -62.55 SS G_CDS: 0.32 Total: -62.22 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.43 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -35.03 -8.75 -43.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707464676.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.855 kcal (2) G-P(sol) polarization free energy of solvation -35.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds