Wall clock time and date at job start Mon Mar 30 2020 00:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46495 * 109.47615 * 2 1 4 4 C 1.36940 * 119.99795 * 275.30774 * 3 2 1 5 5 H 1.08004 * 119.99985 * 37.58022 * 4 3 2 6 6 C 1.38810 * 120.00295 * 217.57310 * 4 3 2 7 7 N 1.31621 * 119.99638 * 21.43181 * 6 4 3 8 8 Si 1.86801 * 120.00273 * 201.43783 * 6 4 3 9 9 H 1.48503 * 109.46963 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47346 * 119.99936 * 8 6 4 11 11 H 1.48504 * 109.46631 * 239.99766 * 8 6 4 12 12 C 1.46497 * 120.00518 * 95.30429 * 3 2 1 13 13 C 1.53002 * 109.47302 * 270.00818 * 12 3 2 14 14 C 1.52999 * 109.47156 * 180.02562 * 13 12 3 15 15 N 1.46501 * 109.47003 * 179.97438 * 14 13 12 16 16 C 1.34777 * 119.99965 * 179.97438 * 15 14 13 17 17 O 1.21555 * 120.00148 * 359.97438 * 16 15 14 18 18 C 1.47870 * 120.00088 * 180.02562 * 16 15 14 19 19 N 1.34544 * 126.05025 * 180.02562 * 18 16 15 20 20 C 1.30869 * 107.27234 * 180.02562 * 19 18 16 21 21 N 1.34586 * 107.62396 * 359.97438 * 20 19 18 22 22 H 0.96998 * 125.74529 * 179.74115 * 21 20 19 23 23 N 1.28849 * 108.50396 * 0.02562 * 21 20 19 24 24 H 1.09003 * 109.46648 * 60.00258 * 1 2 3 25 25 H 1.09001 * 109.47428 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47464 * 300.00800 * 1 2 3 27 27 H 1.09003 * 109.47088 * 239.99314 * 2 1 3 28 28 H 1.09003 * 109.47137 * 119.99945 * 2 1 3 29 29 H 0.97004 * 119.99827 * 180.02562 * 7 6 4 30 30 H 1.08996 * 109.47589 * 150.00148 * 12 3 2 31 31 H 1.08998 * 109.46761 * 29.99917 * 12 3 2 32 32 H 1.08996 * 109.47345 * 59.99181 * 13 12 3 33 33 H 1.09005 * 109.46843 * 299.99850 * 13 12 3 34 34 H 1.08996 * 109.47689 * 59.99359 * 14 13 12 35 35 H 1.08998 * 109.46807 * 299.99038 * 14 13 12 36 36 H 0.97003 * 120.00275 * 359.97438 * 15 14 13 37 37 H 1.08002 * 126.18782 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1432 2.0632 -1.1809 5 1 1.4106 1.9277 -1.9628 6 6 3.2113 2.9288 -1.3729 7 7 4.3028 2.7978 -0.6491 8 14 3.0994 4.2795 -2.6584 9 1 1.7777 4.2134 -3.3321 10 1 3.2552 5.6022 -2.0016 11 1 4.1768 4.0962 -3.6639 12 6 2.3732 2.0327 1.2632 13 6 1.1426 2.7383 1.8365 14 6 1.5133 3.4193 3.1554 15 7 0.3351 4.0954 3.7040 16 6 0.4249 4.7666 4.8693 17 8 1.4834 4.8106 5.4654 18 6 -0.7645 5.4485 5.4233 19 7 -0.8123 6.1500 6.5704 20 6 -2.0372 6.5907 6.7055 21 7 -2.7438 6.1624 5.6432 22 1 -3.6840 6.3369 5.4804 23 7 -1.9626 5.4765 4.8819 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5140 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 5.0490 3.4030 -0.7831 30 1 3.1617 2.7641 1.0859 31 1 2.7254 1.2834 1.9721 32 1 0.3541 2.0069 2.0137 33 1 0.7903 3.4876 1.1275 34 1 2.3017 4.1507 2.9777 35 1 1.8658 2.6703 3.8645 36 1 -0.5097 4.0600 3.2285 37 1 -2.4129 7.1897 7.5219 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707464676.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:35 Heat of formation + Delta-G solvation = 40.922112 kcal Electronic energy + Delta-G solvation = -19850.720641 eV Core-core repulsion = 16664.543885 eV Total energy + Delta-G solvation = -3186.176756 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.48220 -40.61180 -38.17660 -36.29495 -34.46592 -33.80827 -33.25696 -32.08686 -30.21530 -27.45886 -25.93282 -24.65432 -23.77322 -22.54105 -22.06633 -21.41151 -19.84796 -18.61353 -18.39275 -17.48017 -17.05317 -16.90317 -16.41375 -15.81093 -15.69026 -15.55967 -14.89842 -14.83503 -14.23654 -14.05135 -13.25398 -13.23968 -13.17467 -12.77442 -12.72617 -12.57529 -12.31434 -12.12403 -11.92520 -11.80222 -11.65187 -11.45881 -11.37492 -11.22281 -10.81276 -10.48467 -10.20438 -8.53040 -7.79145 -5.43341 0.22499 1.15256 1.44955 1.49081 1.58278 1.61745 2.03427 2.21581 2.52344 3.17345 3.26819 3.52891 3.67716 4.03159 4.16539 4.31180 4.46821 4.55413 4.74962 4.77562 4.84896 4.90600 4.97429 5.05566 5.17725 5.25065 5.30104 5.35684 5.47481 5.62543 5.71898 5.86750 5.94054 6.32733 6.50335 6.92276 7.06747 7.20987 7.90844 8.43193 9.15615 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.020830 B = 0.004069 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.863531 B = 6879.461835 C = 7297.635920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.134 3.866 3 N -0.602 5.602 4 C -0.264 4.264 5 H 0.055 0.945 6 C -0.034 4.034 7 N -0.917 5.917 8 Si 0.952 3.048 9 H -0.266 1.266 10 H -0.291 1.291 11 H -0.292 1.292 12 C 0.151 3.849 13 C -0.123 4.123 14 C 0.133 3.867 15 N -0.695 5.695 16 C 0.604 3.396 17 O -0.559 6.559 18 C 0.125 3.875 19 N -0.515 5.515 20 C 0.221 3.779 21 N -0.377 5.377 22 H 0.474 0.526 23 N -0.276 5.276 24 H 0.036 0.964 25 H 0.065 0.935 26 H 0.051 0.949 27 H 0.029 0.971 28 H 0.045 0.955 29 H 0.251 0.749 30 H 0.061 0.939 31 H 0.031 0.969 32 H 0.071 0.929 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.069 0.931 36 H 0.417 0.583 37 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.742 5.848 12.605 23.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.009 3.991 3 N -0.323 5.323 4 C -0.395 4.395 5 H 0.073 0.927 6 C -0.232 4.232 7 N -0.561 5.561 8 Si 0.781 3.219 9 H -0.190 1.190 10 H -0.218 1.218 11 H -0.219 1.219 12 C 0.024 3.976 13 C -0.163 4.163 14 C 0.009 3.991 15 N -0.347 5.347 16 C 0.387 3.613 17 O -0.435 6.435 18 C -0.155 4.155 19 N -0.241 5.241 20 C -0.076 4.076 21 N -0.103 5.103 22 H 0.326 0.674 23 N -0.119 5.119 24 H 0.055 0.945 25 H 0.084 0.916 26 H 0.070 0.930 27 H 0.047 0.953 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.049 0.951 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.254 0.746 37 H 0.302 0.698 Dipole moment (debyes) X Y Z Total from point charges -17.521 5.615 12.635 22.319 hybrid contribution -0.568 0.956 -0.877 1.416 sum -18.088 6.571 11.758 22.553 Atomic orbital electron populations 1.22174 0.97309 1.00768 1.00825 1.20998 0.93803 0.85670 0.98664 1.43993 1.76450 1.09598 1.02271 1.19221 1.04111 1.21287 0.94861 0.92710 1.25828 0.94006 1.03262 1.00079 1.70135 1.03818 1.38028 1.44151 0.85456 0.77762 0.79617 0.79098 1.19037 1.21774 1.21871 1.20692 0.95121 0.96194 0.85586 1.22193 1.00905 0.99597 0.93651 1.21303 0.86787 0.95779 0.95266 1.45751 1.15098 1.51996 1.21880 1.16718 0.85231 0.78326 0.81035 1.90796 1.29751 1.62081 1.60860 1.23437 0.92671 1.05118 0.94284 1.71241 1.21524 1.14195 1.17142 1.27719 0.85852 0.99272 0.94752 1.45165 1.14306 1.35213 1.15637 0.67446 1.74187 1.02183 1.14866 1.20692 0.94528 0.91642 0.93041 0.95256 0.93625 0.94008 0.92133 0.95108 0.91018 0.92855 0.92991 0.91252 0.74647 0.69758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.08 10.21 71.98 0.73 -4.35 16 2 C 0.13 5.51 6.44 86.38 0.56 6.06 16 3 N -0.60 -29.40 2.43 -702.02 -1.71 -31.11 16 4 C -0.26 -14.31 9.45 84.03 0.79 -13.51 16 5 H 0.06 2.97 7.92 -2.91 -0.02 2.94 16 6 C -0.03 -1.90 4.95 84.86 0.42 -1.48 16 7 N -0.92 -53.83 11.47 21.65 0.25 -53.58 16 8 Si 0.95 44.58 29.60 68.60 2.03 46.61 16 9 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 10 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 11 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 12 C 0.15 6.92 5.33 86.38 0.46 7.38 16 13 C -0.12 -4.56 5.65 30.59 0.17 -4.39 16 14 C 0.13 4.62 5.67 86.38 0.49 5.11 16 15 N -0.70 -21.49 5.55 -465.95 -2.59 -24.08 16 16 C 0.60 20.88 7.83 86.79 0.68 21.56 16 17 O -0.56 -23.81 17.09 -3.89 -0.07 -23.88 16 18 C 0.12 3.52 7.96 137.13 1.09 4.61 16 19 N -0.52 -13.08 11.41 -193.03 -2.20 -15.28 16 20 C 0.22 2.42 13.14 180.30 2.37 4.79 16 21 N -0.38 -3.74 6.93 -60.38 -0.42 -4.16 16 22 H 0.47 -0.14 8.96 -219.80 -1.97 -2.11 16 23 N -0.28 -5.71 11.98 -52.44 -0.63 -6.33 16 24 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.05 1.64 6.64 -2.39 -0.02 1.63 16 27 H 0.03 1.26 8.08 -2.39 -0.02 1.24 16 28 H 0.05 1.74 7.83 -2.39 -0.02 1.73 16 29 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 30 H 0.06 3.25 5.52 -2.39 -0.01 3.24 16 31 H 0.03 1.35 7.86 -2.39 -0.02 1.33 16 32 H 0.07 2.39 6.64 -2.39 -0.02 2.37 16 33 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 34 H 0.05 2.02 8.14 -2.39 -0.02 2.01 16 35 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.42 10.95 8.17 -92.71 -0.76 10.19 16 37 H 0.29 -0.68 8.06 -2.91 -0.02 -0.71 16 Total: -1.00 -79.03 319.15 0.81 -78.22 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -1.62 Total: 7.81 kcal Atomic # 6 Polarization: 18.02 SS G_CDS: 7.77 Total: 25.79 kcal Atomic # 7 Polarization: -127.24 SS G_CDS: -7.30 Total: -134.54 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.07 Total: -23.88 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -79.03 0.81 -78.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707464676.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.142 kcal (2) G-P(sol) polarization free energy of solvation -79.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds