Wall clock time and date at job start Mon Mar 30 2020 00:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.36935 * 120.00390 * 2 1 4 4 H 1.07996 * 120.00451 * 202.34112 * 3 2 1 5 5 C 1.38814 * 120.00030 * 22.34208 * 3 2 1 6 6 N 1.31619 * 119.99996 * 11.35473 * 5 3 2 7 7 Si 1.86801 * 120.00253 * 191.35736 * 5 3 2 8 8 H 1.48500 * 109.46941 * 359.97438 * 7 5 3 9 9 H 1.48503 * 109.46989 * 119.99482 * 7 5 3 10 10 H 1.48496 * 109.47124 * 239.99838 * 7 5 3 11 11 C 1.46505 * 119.99977 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.47263 * 270.00297 * 11 2 1 13 13 C 1.53000 * 109.46969 * 179.97438 * 12 11 2 14 14 N 1.46501 * 109.47180 * 179.97438 * 13 12 11 15 15 C 1.34773 * 120.00142 * 180.02562 * 14 13 12 16 16 O 1.21278 * 120.00055 * 359.97438 * 15 14 13 17 17 C 1.50704 * 119.99961 * 180.02562 * 15 14 13 18 18 C 1.50698 * 109.47002 * 179.97438 * 17 15 14 19 19 N 1.33242 * 125.52550 * 90.00378 * 18 17 15 20 20 C 1.30827 * 109.83299 * 179.97438 * 19 18 17 21 21 N 1.34430 * 108.07425 * 0.02562 * 20 19 18 22 22 H 0.96999 * 126.82286 * 179.74054 * 21 20 19 23 23 N 1.30711 * 125.52838 * 269.99659 * 18 17 15 24 24 H 1.09000 * 109.47434 * 274.21356 * 1 2 3 25 25 H 1.09002 * 109.47150 * 34.21324 * 1 2 3 26 26 H 1.08999 * 109.47612 * 154.20685 * 1 2 3 27 27 H 0.96999 * 120.00248 * 180.02562 * 6 5 3 28 28 H 1.08999 * 109.46863 * 149.99795 * 11 2 1 29 29 H 1.09004 * 109.46808 * 30.00622 * 11 2 1 30 30 H 1.08995 * 109.47142 * 60.00122 * 12 11 2 31 31 H 1.08999 * 109.47047 * 299.99778 * 12 11 2 32 32 H 1.09006 * 109.47205 * 60.00473 * 13 12 11 33 33 H 1.08999 * 109.47304 * 299.99926 * 13 12 11 34 34 H 0.97003 * 119.99469 * 0.02562 * 14 13 12 35 35 H 1.09006 * 109.46744 * 59.99864 * 17 15 14 36 36 H 1.08999 * 109.47043 * 299.99758 * 17 15 14 37 37 H 1.07997 * 125.96632 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1688 1.2210 -0.3555 5 6 1.5338 2.3429 0.4570 6 7 0.3842 2.2691 1.0936 7 14 2.3366 4.0048 0.1684 8 1 3.6143 3.8166 -0.5647 9 1 1.4267 4.8614 -0.6338 10 1 2.6073 4.6572 1.4746 11 6 2.1974 -1.2688 0.0006 12 6 2.4524 -1.7099 1.4432 13 6 3.2168 -3.0352 1.4437 14 7 3.4615 -3.4573 2.8251 15 6 4.1241 -4.6047 3.0719 16 8 4.5174 -5.2880 2.1503 17 6 4.3753 -5.0391 4.4929 18 6 5.1283 -6.3445 4.4934 19 7 6.4545 -6.4732 4.4934 20 6 6.7774 -7.7410 4.4944 21 7 5.6419 -8.4606 4.4946 22 1 5.5664 -9.4276 4.4918 23 7 4.5865 -7.5340 4.4941 24 1 -0.3634 0.0755 1.0249 25 1 -0.3633 0.8498 -0.5778 26 1 -0.3634 -0.9252 -0.4471 27 1 -0.0463 3.0777 1.4126 28 1 3.1498 -1.1386 -0.5134 29 1 1.6083 -2.0286 -0.5130 30 1 1.5000 -1.8400 1.9570 31 1 3.0415 -0.9500 1.9567 32 1 4.1693 -2.9055 0.9298 33 1 2.6274 -3.7949 0.9303 34 1 3.1466 -2.9109 3.5622 35 1 3.4228 -5.1693 5.0067 36 1 4.9643 -4.2793 5.0064 37 1 7.7810 -8.1400 4.4943 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001712983263.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:20 Heat of formation + Delta-G solvation = 67.259263 kcal Electronic energy + Delta-G solvation = -19315.270351 eV Core-core repulsion = 16130.235659 eV Total energy + Delta-G solvation = -3185.034691 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.33094 -39.48055 -36.22496 -34.69982 -33.52641 -32.10448 -31.79372 -30.22980 -28.88952 -25.91807 -25.16255 -23.09244 -22.11719 -21.18637 -20.48279 -19.73855 -18.58837 -17.09917 -16.73771 -15.99276 -15.72533 -15.37174 -15.15121 -14.70760 -14.19178 -13.72073 -13.53641 -13.26133 -13.01844 -12.63194 -12.39256 -12.22764 -11.55769 -11.27251 -11.03412 -10.82431 -10.71288 -10.44931 -10.41955 -10.28383 -10.08419 -10.04387 -9.89843 -9.74926 -9.64433 -8.89106 -8.53678 -6.74782 -5.70914 -3.16534 1.36777 2.39347 2.58181 2.70069 3.37118 3.40386 3.46245 3.48378 3.87270 4.37714 4.51800 4.65187 4.88297 5.16253 5.27961 5.31605 5.47478 5.57449 5.87879 5.94772 5.98844 6.12768 6.16955 6.27935 6.47421 6.64804 6.75982 6.79026 6.86477 7.04308 7.41396 7.60770 7.75216 7.83149 7.83408 8.29540 8.42209 9.26178 9.89529 10.38363 11.34266 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.041643 B = 0.002853 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.215210 B = 9811.763985 C =10063.658158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.603 5.603 3 C -0.252 4.252 4 H 0.069 0.931 5 C -0.001 4.001 6 N -0.909 5.909 7 Si 0.904 3.096 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.291 1.291 11 C 0.156 3.844 12 C -0.150 4.150 13 C 0.121 3.879 14 N -0.724 5.724 15 C 0.518 3.482 16 O -0.538 6.538 17 C -0.052 4.052 18 C 0.252 3.748 19 N -0.534 5.534 20 C 0.262 3.738 21 N -0.485 5.485 22 H 0.441 0.559 23 N -0.305 5.305 24 H 0.027 0.973 25 H 0.044 0.956 26 H -0.004 1.004 27 H 0.251 0.749 28 H 0.045 0.955 29 H 0.039 0.961 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.402 0.598 35 H 0.118 0.882 36 H 0.123 0.877 37 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.966 -18.901 9.070 22.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.326 5.326 3 C -0.381 4.381 4 H 0.087 0.913 5 C -0.199 4.199 6 N -0.555 5.555 7 Si 0.734 3.266 8 H -0.203 1.203 9 H -0.217 1.217 10 H -0.218 1.218 11 C 0.028 3.972 12 C -0.191 4.191 13 C -0.003 4.003 14 N -0.375 5.375 15 C 0.302 3.698 16 O -0.414 6.414 17 C -0.094 4.094 18 C -0.031 4.031 19 N -0.262 5.262 20 C -0.038 4.038 21 N -0.203 5.203 22 H 0.286 0.714 23 N -0.134 5.134 24 H 0.046 0.954 25 H 0.063 0.937 26 H 0.015 0.985 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.237 0.763 35 H 0.136 0.864 36 H 0.141 0.859 37 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 8.587 -19.030 8.426 22.514 hybrid contribution 0.434 0.437 0.392 0.730 sum 9.020 -18.593 8.818 22.468 Atomic orbital electron populations 1.20799 0.82521 0.95583 0.99228 1.43997 1.01974 1.00734 1.85879 1.19279 0.97948 0.85425 1.35478 0.91305 1.25036 0.97730 0.98539 0.98556 1.70077 1.17895 1.26890 1.40648 0.86182 0.78672 0.84294 0.77405 1.20318 1.21666 1.21760 1.20717 0.95966 0.88201 0.92324 1.22549 0.99630 0.93985 1.02905 1.21512 1.00298 0.97074 0.81399 1.46085 1.57808 1.23502 1.10129 1.20138 0.78062 0.81222 0.90355 1.90718 1.50692 1.53837 1.46199 1.19935 1.01371 0.91449 0.96686 1.23319 0.88763 0.93636 0.97418 1.70360 1.13853 1.18068 1.23934 1.26068 0.94205 0.87383 0.96096 1.48076 1.04530 1.10421 1.57271 0.71359 1.77980 1.10424 0.99009 1.26015 0.95429 0.93702 0.98511 0.93861 0.93626 0.94309 0.92123 0.91209 0.91770 0.91995 0.76327 0.86401 0.85881 0.76101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.05 9.01 59.84 0.54 4.58 16 2 N -0.60 -15.18 2.93 -181.12 -0.53 -15.71 16 3 C -0.25 -6.90 9.67 -15.06 -0.15 -7.05 16 4 H 0.07 1.86 7.84 -52.49 -0.41 1.44 16 5 C 0.00 -0.02 5.13 -17.43 -0.09 -0.11 16 6 N -0.91 -26.39 10.59 55.49 0.59 -25.80 16 7 Si 0.90 21.84 29.57 -169.99 -5.03 16.81 16 8 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 9 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 11 C 0.16 3.16 5.71 -4.04 -0.02 3.14 16 12 C -0.15 -2.63 5.65 -26.73 -0.15 -2.78 16 13 C 0.12 1.85 5.67 -4.04 -0.02 1.82 16 14 N -0.72 -9.52 5.56 -60.29 -0.33 -9.85 16 15 C 0.52 7.38 7.82 -10.99 -0.09 7.29 16 16 O -0.54 -10.00 16.03 5.56 0.09 -9.91 16 17 C -0.05 -0.56 6.33 -29.03 -0.18 -0.74 16 18 C 0.25 3.26 6.63 -156.86 -1.04 2.22 16 19 N -0.53 -6.63 11.19 -11.98 -0.13 -6.76 16 20 C 0.26 2.12 13.13 -90.66 -1.19 0.93 16 21 N -0.48 -4.02 7.45 29.53 0.22 -3.80 16 22 H 0.44 1.83 8.96 -182.33 -1.63 0.19 16 23 N -0.31 -3.85 12.80 32.42 0.41 -3.44 16 24 H 0.03 0.73 7.42 -51.93 -0.39 0.34 16 25 H 0.04 1.19 7.19 -51.93 -0.37 0.82 16 26 H 0.00 -0.08 7.84 -51.93 -0.41 -0.49 16 27 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.05 0.91 8.03 -51.93 -0.42 0.49 16 29 H 0.04 0.72 7.86 -51.93 -0.41 0.32 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.40 4.26 8.47 -40.82 -0.35 3.92 16 35 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.12 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.22 0.57 8.06 -52.49 -0.42 0.15 16 LS Contribution 321.02 15.07 4.84 4.84 Total: -1.00 -37.24 321.02 -8.75 -45.98 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -6.48 Total: -1.65 kcal Atomic # 6 Polarization: 11.69 SS G_CDS: -2.39 Total: 9.30 kcal Atomic # 7 Polarization: -65.59 SS G_CDS: 0.22 Total: -65.37 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.09 Total: -9.91 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -37.24 -8.75 -45.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001712983263.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.244 kcal (2) G-P(sol) polarization free energy of solvation -37.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds