Wall clock time and date at job start Mon Mar 30 2020 00:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.36935 * 120.00390 * 2 1 4 4 H 1.07996 * 120.00451 * 202.34112 * 3 2 1 5 5 C 1.38814 * 120.00030 * 22.34208 * 3 2 1 6 6 N 1.31619 * 119.99996 * 11.35473 * 5 3 2 7 7 Si 1.86801 * 120.00253 * 191.35736 * 5 3 2 8 8 H 1.48500 * 109.46941 * 359.97438 * 7 5 3 9 9 H 1.48503 * 109.46989 * 119.99482 * 7 5 3 10 10 H 1.48496 * 109.47124 * 239.99838 * 7 5 3 11 11 C 1.46505 * 119.99977 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.47263 * 270.00297 * 11 2 1 13 13 C 1.53000 * 109.46969 * 179.97438 * 12 11 2 14 14 N 1.46501 * 109.47180 * 179.97438 * 13 12 11 15 15 C 1.34773 * 120.00142 * 180.02562 * 14 13 12 16 16 O 1.21278 * 120.00055 * 359.97438 * 15 14 13 17 17 C 1.50704 * 119.99961 * 180.02562 * 15 14 13 18 18 C 1.50698 * 109.47002 * 179.97438 * 17 15 14 19 19 N 1.33242 * 125.52550 * 90.00378 * 18 17 15 20 20 C 1.30827 * 109.83299 * 179.97438 * 19 18 17 21 21 N 1.34430 * 108.07425 * 0.02562 * 20 19 18 22 22 H 0.96999 * 126.82286 * 179.74054 * 21 20 19 23 23 N 1.30711 * 125.52838 * 269.99659 * 18 17 15 24 24 H 1.09000 * 109.47434 * 274.21356 * 1 2 3 25 25 H 1.09002 * 109.47150 * 34.21324 * 1 2 3 26 26 H 1.08999 * 109.47612 * 154.20685 * 1 2 3 27 27 H 0.96999 * 120.00248 * 180.02562 * 6 5 3 28 28 H 1.08999 * 109.46863 * 149.99795 * 11 2 1 29 29 H 1.09004 * 109.46808 * 30.00622 * 11 2 1 30 30 H 1.08995 * 109.47142 * 60.00122 * 12 11 2 31 31 H 1.08999 * 109.47047 * 299.99778 * 12 11 2 32 32 H 1.09006 * 109.47205 * 60.00473 * 13 12 11 33 33 H 1.08999 * 109.47304 * 299.99926 * 13 12 11 34 34 H 0.97003 * 119.99469 * 0.02562 * 14 13 12 35 35 H 1.09006 * 109.46744 * 59.99864 * 17 15 14 36 36 H 1.08999 * 109.47043 * 299.99758 * 17 15 14 37 37 H 1.07997 * 125.96632 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1688 1.2210 -0.3555 5 6 1.5338 2.3429 0.4570 6 7 0.3842 2.2691 1.0936 7 14 2.3366 4.0048 0.1684 8 1 3.6143 3.8166 -0.5647 9 1 1.4267 4.8614 -0.6338 10 1 2.6073 4.6572 1.4746 11 6 2.1974 -1.2688 0.0006 12 6 2.4524 -1.7099 1.4432 13 6 3.2168 -3.0352 1.4437 14 7 3.4615 -3.4573 2.8251 15 6 4.1241 -4.6047 3.0719 16 8 4.5174 -5.2880 2.1503 17 6 4.3753 -5.0391 4.4929 18 6 5.1283 -6.3445 4.4934 19 7 6.4545 -6.4732 4.4934 20 6 6.7774 -7.7410 4.4944 21 7 5.6419 -8.4606 4.4946 22 1 5.5664 -9.4276 4.4918 23 7 4.5865 -7.5340 4.4941 24 1 -0.3634 0.0755 1.0249 25 1 -0.3633 0.8498 -0.5778 26 1 -0.3634 -0.9252 -0.4471 27 1 -0.0463 3.0777 1.4126 28 1 3.1498 -1.1386 -0.5134 29 1 1.6083 -2.0286 -0.5130 30 1 1.5000 -1.8400 1.9570 31 1 3.0415 -0.9500 1.9567 32 1 4.1693 -2.9055 0.9298 33 1 2.6274 -3.7949 0.9303 34 1 3.1466 -2.9109 3.5622 35 1 3.4228 -5.1693 5.0067 36 1 4.9643 -4.2793 5.0064 37 1 7.7810 -8.1400 4.4943 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001712983263.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:19 Heat of formation + Delta-G solvation = 40.035428 kcal Electronic energy + Delta-G solvation = -19316.450865 eV Core-core repulsion = 16130.235659 eV Total energy + Delta-G solvation = -3186.215206 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -43.06956 -40.63333 -37.94369 -36.16695 -34.35284 -33.71696 -32.72034 -31.78003 -29.93978 -27.92592 -26.76826 -23.94183 -23.55633 -22.27207 -21.99958 -20.84866 -19.27277 -18.74708 -18.14317 -17.20235 -16.87728 -16.57496 -16.18976 -16.12627 -15.57557 -15.27548 -14.82042 -14.65617 -14.41265 -14.27339 -13.42286 -13.15121 -13.04774 -12.94290 -12.75392 -12.69555 -12.43270 -12.25416 -11.98444 -11.83740 -11.43782 -11.28546 -11.08279 -10.98998 -10.65329 -10.60112 -10.08286 -8.77915 -7.80637 -5.28450 0.64815 1.47743 1.49523 1.59573 1.61199 1.71956 1.85952 2.39163 2.53793 3.17835 3.33932 3.67635 3.68876 3.87798 4.15070 4.17413 4.34935 4.45773 4.52412 4.57013 4.68641 4.83207 4.90284 4.93588 5.24151 5.33333 5.33748 5.35065 5.42596 5.52047 5.67176 5.75689 6.27336 6.36019 6.55255 7.10201 7.18097 7.22653 7.90087 8.33382 9.23114 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.041643 B = 0.002853 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.215210 B = 9811.763985 C =10063.658158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.621 5.621 3 C -0.259 4.259 4 H 0.070 0.930 5 C -0.054 4.054 6 N -0.939 5.939 7 Si 0.967 3.033 8 H -0.268 1.268 9 H -0.293 1.293 10 H -0.291 1.291 11 C 0.150 3.850 12 C -0.129 4.129 13 C 0.134 3.866 14 N -0.715 5.715 15 C 0.519 3.481 16 O -0.585 6.585 17 C -0.047 4.047 18 C 0.233 3.767 19 N -0.577 5.577 20 C 0.274 3.726 21 N -0.475 5.475 22 H 0.458 0.542 23 N -0.341 5.341 24 H 0.006 0.994 25 H 0.016 0.984 26 H 0.029 0.971 27 H 0.247 0.753 28 H 0.048 0.952 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.416 0.584 35 H 0.143 0.857 36 H 0.146 0.854 37 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.237 -19.950 9.643 24.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.344 5.344 3 C -0.390 4.390 4 H 0.088 0.912 5 C -0.249 4.249 6 N -0.586 5.586 7 Si 0.796 3.204 8 H -0.192 1.192 9 H -0.220 1.220 10 H -0.218 1.218 11 C 0.023 3.977 12 C -0.169 4.169 13 C 0.010 3.990 14 N -0.367 5.367 15 C 0.305 3.695 16 O -0.465 6.465 17 C -0.088 4.088 18 C -0.051 4.051 19 N -0.306 5.306 20 C -0.024 4.024 21 N -0.195 5.195 22 H 0.306 0.694 23 N -0.171 5.171 24 H 0.024 0.976 25 H 0.035 0.965 26 H 0.047 0.953 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.253 0.747 35 H 0.161 0.839 36 H 0.164 0.836 37 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 9.868 -20.122 9.019 24.158 hybrid contribution 0.092 0.628 0.186 0.661 sum 9.960 -19.494 9.206 23.748 Atomic orbital electron populations 1.20563 0.82712 0.95945 0.97671 1.44231 1.02245 1.01804 1.86147 1.19571 0.98060 0.86620 1.34711 0.91193 1.25770 0.98483 1.01747 0.98909 1.70231 1.19183 1.27308 1.41848 0.85198 0.78029 0.80153 0.77040 1.19213 1.21960 1.21819 1.20892 0.95918 0.86787 0.94064 1.22186 0.99448 0.94601 1.00676 1.21194 0.99505 0.95656 0.82691 1.45942 1.57482 1.23583 1.09717 1.20704 0.76872 0.80508 0.91408 1.90692 1.52635 1.55225 1.47939 1.20013 1.02997 0.91531 0.94308 1.23650 0.89352 0.94236 0.97834 1.70344 1.13906 1.20455 1.25873 1.27023 0.95726 0.86334 0.93279 1.48016 1.03896 1.11059 1.56532 0.69353 1.77860 1.12511 0.99659 1.27114 0.97611 0.96483 0.95250 0.94340 0.93381 0.92382 0.92440 0.92822 0.92437 0.91991 0.74674 0.83876 0.83611 0.71146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.71 9.01 127.77 1.15 9.86 16 2 N -0.62 -31.00 2.93 -726.95 -2.13 -33.13 16 3 C -0.26 -14.17 9.67 84.03 0.81 -13.36 16 4 H 0.07 3.73 7.84 -2.91 -0.02 3.71 16 5 C -0.05 -3.03 5.13 84.86 0.44 -2.60 16 6 N -0.94 -55.13 10.59 21.65 0.23 -54.90 16 7 Si 0.97 44.98 29.57 68.60 2.03 47.01 16 8 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 9 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 10 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 11 C 0.15 5.89 5.71 86.38 0.49 6.39 16 12 C -0.13 -4.39 5.65 30.59 0.17 -4.22 16 13 C 0.13 3.94 5.67 86.38 0.49 4.43 16 14 N -0.72 -17.83 5.56 -463.05 -2.57 -20.40 16 15 C 0.52 14.24 7.82 87.66 0.69 14.92 16 16 O -0.58 -21.57 16.03 -3.02 -0.05 -21.62 16 17 C -0.05 -0.93 6.33 29.10 0.18 -0.75 16 18 C 0.23 5.76 6.63 138.63 0.92 6.68 16 19 N -0.58 -13.50 11.19 -191.81 -2.15 -15.64 16 20 C 0.27 3.81 13.13 180.36 2.37 6.17 16 21 N -0.48 -7.04 7.45 -60.49 -0.45 -7.49 16 22 H 0.46 2.92 8.96 -213.10 -1.91 1.01 16 23 N -0.34 -8.28 12.80 -51.34 -0.66 -8.94 16 24 H 0.01 0.30 7.42 -2.39 -0.02 0.28 16 25 H 0.02 0.90 7.19 -2.39 -0.02 0.88 16 26 H 0.03 1.23 7.84 -2.39 -0.02 1.21 16 27 H 0.25 14.11 8.31 -92.71 -0.77 13.33 16 28 H 0.05 1.86 8.03 -2.39 -0.02 1.84 16 29 H 0.06 2.06 7.86 -2.38 -0.02 2.04 16 30 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 33 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.42 8.09 8.47 -92.71 -0.79 7.31 16 35 H 0.14 2.04 8.14 -2.38 -0.02 2.02 16 36 H 0.15 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.27 0.37 8.06 -2.91 -0.02 0.35 16 Total: -1.00 -81.07 321.02 0.37 -80.71 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -1.60 Total: 6.86 kcal Atomic # 6 Polarization: 19.83 SS G_CDS: 7.71 Total: 27.55 kcal Atomic # 7 Polarization: -132.78 SS G_CDS: -7.72 Total: -140.50 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.05 Total: -21.62 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -81.07 0.37 -80.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001712983263.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.741 kcal (2) G-P(sol) polarization free energy of solvation -81.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds