Wall clock time and date at job start Mon Mar 30 2020 00:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46811 * 2 1 4 4 C 1.52997 * 109.47380 * 239.99783 * 2 1 3 5 5 N 1.46497 * 109.46983 * 185.00040 * 4 2 1 6 6 C 1.34780 * 119.99566 * 180.02562 * 5 4 2 7 7 O 1.21280 * 120.00423 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99795 * 180.02562 * 6 5 4 9 9 C 1.52997 * 109.47212 * 179.97438 * 8 6 5 10 10 N 1.46500 * 109.47473 * 179.97438 * 9 8 6 11 11 C 1.35313 * 125.86534 * 124.99947 * 10 9 8 12 12 C 1.35358 * 106.17043 * 180.02562 * 11 10 9 13 13 N 1.33761 * 106.49898 * 359.97438 * 12 11 10 14 14 N 1.28640 * 108.88520 * 359.73620 * 13 12 11 15 15 N 1.46500 * 109.47078 * 119.99593 * 2 1 3 16 16 C 1.36939 * 120.00440 * 275.00144 * 15 2 1 17 17 H 1.08007 * 119.99440 * 0.02562 * 16 15 2 18 18 C 1.38805 * 120.00308 * 179.97438 * 16 15 2 19 19 N 1.31618 * 120.00179 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 120.00108 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.46925 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47078 * 120.00181 * 20 18 16 23 23 H 1.48493 * 109.47060 * 240.00290 * 20 18 16 24 24 H 1.09001 * 109.46558 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47301 * 300.00058 * 1 2 3 26 26 H 1.08998 * 109.47136 * 60.00153 * 1 2 3 27 27 H 1.09001 * 109.46832 * 64.99857 * 4 2 1 28 28 H 1.09002 * 109.47153 * 305.00048 * 4 2 1 29 29 H 0.96995 * 120.00423 * 359.97438 * 5 4 2 30 30 H 1.09002 * 109.47060 * 299.99722 * 8 6 5 31 31 H 1.09001 * 109.47380 * 59.99809 * 8 6 5 32 32 H 1.09002 * 109.47153 * 299.99998 * 9 8 6 33 33 H 1.08998 * 109.47533 * 59.99628 * 9 8 6 34 34 H 1.07993 * 126.91793 * 359.97438 * 11 10 9 35 35 H 1.08005 * 126.74942 * 179.97438 * 12 11 10 36 36 H 0.97006 * 119.99969 * 94.99978 * 15 2 1 37 37 H 0.97000 * 120.00173 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1904 6 6 4.1732 -1.4283 -2.1910 7 8 3.5702 -1.8833 -3.1398 8 6 5.6750 -1.5369 -2.1303 9 6 6.1851 -2.2581 -3.3796 10 7 7.6452 -2.3632 -3.3209 11 6 8.3622 -3.5066 -3.4180 12 6 9.6627 -3.1461 -3.3129 13 7 9.6773 -1.8174 -3.1592 14 7 8.4665 -1.3832 -3.1741 15 7 2.0184 -0.6905 1.1962 16 6 2.1492 -0.0074 2.3758 17 1 1.8919 1.0405 2.4243 18 6 2.6113 -0.6618 3.5093 19 7 2.9244 -1.9389 3.4503 20 14 2.7890 0.2700 5.1186 21 1 2.3742 1.6821 4.9214 22 1 1.9279 -0.3587 6.1523 23 1 4.2057 0.2271 5.5616 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.7517 -0.1583 -2.1369 28 1 1.6055 -1.7198 -1.2951 29 1 3.9825 -0.4621 -0.4318 30 1 6.1100 -0.5385 -2.0837 31 1 5.9631 -2.1005 -1.2429 32 1 5.7502 -3.2565 -3.4258 33 1 5.8971 -1.6950 -4.2673 34 1 7.9749 -4.5058 -3.5516 35 1 10.5199 -3.8023 -3.3464 36 1 2.2491 -1.6317 1.1527 37 1 3.2477 -2.3961 4.2423 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713307343.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:22 Heat of formation + Delta-G solvation = 66.818241 kcal Electronic energy + Delta-G solvation = -19662.030168 eV Core-core repulsion = 16476.976352 eV Total energy + Delta-G solvation = -3185.053816 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.35707 -39.65576 -36.55064 -35.32050 -33.67394 -32.04668 -31.23840 -31.00000 -28.80862 -26.58828 -24.69956 -23.65175 -22.80471 -21.55795 -20.34342 -19.93809 -17.99619 -17.47548 -16.73651 -16.32176 -15.84464 -15.66990 -15.08373 -14.89065 -14.44480 -14.04050 -13.62646 -13.43902 -13.08814 -12.76689 -12.33886 -12.17100 -12.14246 -11.88924 -11.56254 -11.44252 -11.03106 -10.94504 -10.82751 -10.41776 -10.31899 -10.07726 -9.80769 -9.79781 -9.52774 -9.06747 -8.79659 -7.12675 -5.89423 -3.19998 1.45937 2.13228 2.46206 2.70045 3.35436 3.41772 3.43406 3.44029 4.18801 4.39784 4.48187 4.49914 4.81053 4.90771 5.07016 5.09912 5.26313 5.36678 5.39878 5.48754 5.50680 5.65562 5.84500 5.99158 6.01288 6.10145 6.21756 6.40243 6.47721 6.64522 6.71441 6.94771 7.59706 7.73088 8.27938 8.33800 8.38139 9.40373 9.94065 10.29547 11.32568 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.017921 B = 0.004044 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.032427 B = 6922.894925 C = 8106.509116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.159 3.841 3 H 0.054 0.946 4 C 0.114 3.886 5 N -0.706 5.706 6 C 0.519 3.481 7 O -0.558 6.558 8 C -0.157 4.157 9 C 0.133 3.867 10 N -0.289 5.289 11 C -0.048 4.048 12 C -0.056 4.056 13 N -0.275 5.275 14 N -0.085 5.085 15 N -0.724 5.724 16 C -0.244 4.244 17 H 0.072 0.928 18 C -0.009 4.009 19 N -0.931 5.931 20 Si 0.906 3.094 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 H 0.049 0.951 25 H 0.058 0.942 26 H 0.040 0.960 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.413 0.587 30 H 0.111 0.889 31 H 0.105 0.895 32 H 0.115 0.885 33 H 0.109 0.891 34 H 0.191 0.809 35 H 0.189 0.811 36 H 0.385 0.615 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.984 -2.619 -13.545 15.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.048 3.952 3 H 0.072 0.928 4 C -0.010 4.010 5 N -0.357 5.357 6 C 0.304 3.696 7 O -0.438 6.438 8 C -0.198 4.198 9 C 0.012 3.988 10 N -0.083 5.083 11 C -0.199 4.199 12 C -0.213 4.213 13 N -0.141 5.141 14 N -0.065 5.065 15 N -0.367 5.367 16 C -0.375 4.375 17 H 0.090 0.910 18 C -0.206 4.206 19 N -0.578 5.578 20 Si 0.737 3.263 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.059 0.941 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.250 0.750 30 H 0.129 0.871 31 H 0.123 0.877 32 H 0.134 0.866 33 H 0.127 0.873 34 H 0.208 0.792 35 H 0.206 0.794 36 H 0.219 0.781 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.670 -1.266 -13.876 15.043 hybrid contribution 0.072 -1.035 1.314 1.674 sum 5.742 -2.301 -12.562 14.003 Atomic orbital electron populations 1.22364 0.98221 1.01301 1.00454 1.20520 0.92764 0.95789 0.86082 0.92785 1.21734 0.79145 1.01272 0.98849 1.45967 1.08517 1.58062 1.23158 1.20069 0.88774 0.78105 0.82691 1.90692 1.70407 1.48976 1.33756 1.21868 0.94126 1.04572 0.99191 1.21862 0.71642 1.04949 1.00364 1.47596 1.09471 1.05448 1.45763 1.23753 0.92630 0.93839 1.09664 1.23632 0.96982 0.93246 1.07447 1.75122 1.11934 1.10436 1.16564 1.78304 0.94427 1.14612 1.19117 1.42486 1.78113 1.10803 1.05300 1.19270 1.36988 0.93948 0.87299 0.91010 1.24742 1.01876 0.95902 0.98067 1.69666 1.50567 1.08668 1.28942 0.86141 0.77349 0.78840 0.83974 1.20510 1.21843 1.21816 0.93194 0.92264 0.94144 0.91642 0.91671 0.75016 0.87083 0.87676 0.86637 0.87325 0.79209 0.79410 0.78132 0.93464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 9.49 37.16 0.35 -2.34 16 2 C 0.16 2.82 3.05 -67.93 -0.21 2.62 16 3 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 4 C 0.11 1.80 5.23 -4.04 -0.02 1.78 16 5 N -0.71 -10.63 5.39 -60.30 -0.32 -10.95 16 6 C 0.52 7.28 7.83 -10.98 -0.09 7.19 16 7 O -0.56 -9.14 15.98 5.56 0.09 -9.05 16 8 C -0.16 -1.73 5.83 -27.88 -0.16 -1.89 16 9 C 0.13 1.29 5.74 -4.04 -0.02 1.26 16 10 N -0.29 -3.18 3.44 -61.26 -0.21 -3.39 16 11 C -0.05 -0.43 11.57 -17.04 -0.20 -0.62 16 12 C -0.06 -0.56 12.05 -17.74 -0.21 -0.78 16 13 N -0.27 -3.84 12.41 30.24 0.38 -3.46 16 14 N -0.08 -1.18 12.92 60.35 0.78 -0.40 16 15 N -0.72 -16.36 4.56 -53.42 -0.24 -16.61 16 16 C -0.24 -6.26 9.93 -15.06 -0.15 -6.41 16 17 H 0.07 1.81 7.83 -52.48 -0.41 1.39 16 18 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 19 N -0.93 -26.60 13.06 55.49 0.72 -25.87 16 20 Si 0.91 21.41 29.55 -169.99 -5.02 16.39 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.41 6.42 8.14 -40.82 -0.33 6.09 16 30 H 0.11 1.20 8.12 -51.93 -0.42 0.78 16 31 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.12 0.94 8.03 -51.93 -0.42 0.53 16 33 H 0.11 1.03 8.10 -51.93 -0.42 0.61 16 34 H 0.19 0.94 8.06 -52.49 -0.42 0.51 16 35 H 0.19 1.23 8.06 -52.48 -0.42 0.80 16 36 H 0.38 9.41 7.80 -40.82 -0.32 9.09 16 37 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 324.23 15.07 4.89 4.89 Total: -1.00 -31.91 324.23 -5.01 -36.92 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -5.26 Total: 11.08 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -0.80 Total: 0.45 kcal Atomic # 7 Polarization: -61.79 SS G_CDS: 1.10 Total: -60.68 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.09 Total: -9.05 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.91 -5.01 -36.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713307343.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.740 kcal (2) G-P(sol) polarization free energy of solvation -31.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds