Wall clock time and date at job start Mon Mar 30 2020 00:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46811 * 2 1 4 4 C 1.52997 * 109.47380 * 239.99783 * 2 1 3 5 5 N 1.46497 * 109.46983 * 185.00040 * 4 2 1 6 6 C 1.34780 * 119.99566 * 180.02562 * 5 4 2 7 7 O 1.21280 * 120.00423 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99795 * 180.02562 * 6 5 4 9 9 C 1.52997 * 109.47212 * 179.97438 * 8 6 5 10 10 N 1.46500 * 109.47473 * 179.97438 * 9 8 6 11 11 C 1.35313 * 125.86534 * 124.99947 * 10 9 8 12 12 C 1.35358 * 106.17043 * 180.02562 * 11 10 9 13 13 N 1.33761 * 106.49898 * 359.97438 * 12 11 10 14 14 N 1.28640 * 108.88520 * 359.73620 * 13 12 11 15 15 N 1.46500 * 109.47078 * 119.99593 * 2 1 3 16 16 C 1.36939 * 120.00440 * 275.00144 * 15 2 1 17 17 H 1.08007 * 119.99440 * 0.02562 * 16 15 2 18 18 C 1.38805 * 120.00308 * 179.97438 * 16 15 2 19 19 N 1.31618 * 120.00179 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 120.00108 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.46925 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47078 * 120.00181 * 20 18 16 23 23 H 1.48493 * 109.47060 * 240.00290 * 20 18 16 24 24 H 1.09001 * 109.46558 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47301 * 300.00058 * 1 2 3 26 26 H 1.08998 * 109.47136 * 60.00153 * 1 2 3 27 27 H 1.09001 * 109.46832 * 64.99857 * 4 2 1 28 28 H 1.09002 * 109.47153 * 305.00048 * 4 2 1 29 29 H 0.96995 * 120.00423 * 359.97438 * 5 4 2 30 30 H 1.09002 * 109.47060 * 299.99722 * 8 6 5 31 31 H 1.09001 * 109.47380 * 59.99809 * 8 6 5 32 32 H 1.09002 * 109.47153 * 299.99998 * 9 8 6 33 33 H 1.08998 * 109.47533 * 59.99628 * 9 8 6 34 34 H 1.07993 * 126.91793 * 359.97438 * 11 10 9 35 35 H 1.08005 * 126.74942 * 179.97438 * 12 11 10 36 36 H 0.97006 * 119.99969 * 94.99978 * 15 2 1 37 37 H 0.97000 * 120.00173 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1904 6 6 4.1732 -1.4283 -2.1910 7 8 3.5702 -1.8833 -3.1398 8 6 5.6750 -1.5369 -2.1303 9 6 6.1851 -2.2581 -3.3796 10 7 7.6452 -2.3632 -3.3209 11 6 8.3622 -3.5066 -3.4180 12 6 9.6627 -3.1461 -3.3129 13 7 9.6773 -1.8174 -3.1592 14 7 8.4665 -1.3832 -3.1741 15 7 2.0184 -0.6905 1.1962 16 6 2.1492 -0.0074 2.3758 17 1 1.8919 1.0405 2.4243 18 6 2.6113 -0.6618 3.5093 19 7 2.9244 -1.9389 3.4503 20 14 2.7890 0.2700 5.1186 21 1 2.3742 1.6821 4.9214 22 1 1.9279 -0.3587 6.1523 23 1 4.2057 0.2271 5.5616 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.7517 -0.1583 -2.1369 28 1 1.6055 -1.7198 -1.2951 29 1 3.9825 -0.4621 -0.4318 30 1 6.1100 -0.5385 -2.0837 31 1 5.9631 -2.1005 -1.2429 32 1 5.7502 -3.2565 -3.4258 33 1 5.8971 -1.6950 -4.2673 34 1 7.9749 -4.5058 -3.5516 35 1 10.5199 -3.8023 -3.3464 36 1 2.2491 -1.6317 1.1527 37 1 3.2477 -2.3961 4.2423 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713307343.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:21 Heat of formation + Delta-G solvation = 43.252146 kcal Electronic energy + Delta-G solvation = -19663.052070 eV Core-core repulsion = 16476.976352 eV Total energy + Delta-G solvation = -3186.075718 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.17496 -40.83100 -38.00806 -36.22950 -35.20414 -33.67698 -32.15311 -31.87893 -30.53250 -27.72296 -25.99048 -25.32810 -23.58837 -22.43316 -21.73437 -21.13359 -19.37427 -18.82152 -17.73955 -17.35544 -16.98678 -16.97060 -16.41855 -15.86278 -15.67388 -15.38874 -15.01379 -14.59024 -14.40656 -13.83088 -13.73409 -13.55567 -13.38934 -13.07051 -12.82576 -12.80178 -12.50996 -12.42012 -12.14348 -11.86333 -11.71704 -11.65346 -11.23033 -11.03475 -10.90565 -10.31514 -10.03696 -9.03140 -7.93573 -5.21835 0.67166 1.35316 1.48295 1.50521 1.56664 1.58449 1.65415 2.32024 2.56815 3.40463 3.41601 3.64366 3.71297 3.83194 3.90037 4.00268 4.24915 4.27472 4.34811 4.40397 4.46986 4.64156 4.66237 4.74945 4.86780 4.89253 5.06870 5.26691 5.30144 5.39746 5.56345 5.58879 5.64952 6.28153 6.52971 7.15986 7.35967 7.53834 8.08304 8.32354 9.29294 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.017921 B = 0.004044 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.032427 B = 6922.894925 C = 8106.509116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.157 3.843 3 H 0.058 0.942 4 C 0.123 3.877 5 N -0.711 5.711 6 C 0.522 3.478 7 O -0.579 6.579 8 C -0.146 4.146 9 C 0.136 3.864 10 N -0.290 5.290 11 C -0.034 4.034 12 C -0.065 4.065 13 N -0.314 5.314 14 N -0.126 5.126 15 N -0.732 5.732 16 C -0.233 4.233 17 H 0.077 0.923 18 C -0.069 4.069 19 N -0.966 5.966 20 Si 0.963 3.037 21 H -0.267 1.267 22 H -0.299 1.299 23 H -0.297 1.297 24 H 0.043 0.957 25 H 0.042 0.958 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.055 0.945 29 H 0.411 0.589 30 H 0.112 0.888 31 H 0.106 0.894 32 H 0.136 0.864 33 H 0.110 0.890 34 H 0.233 0.767 35 H 0.219 0.781 36 H 0.374 0.626 37 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.843 -2.754 -14.508 15.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.049 3.951 3 H 0.076 0.924 4 C -0.001 4.001 5 N -0.361 5.361 6 C 0.309 3.691 7 O -0.460 6.460 8 C -0.187 4.187 9 C 0.015 3.985 10 N -0.084 5.084 11 C -0.186 4.186 12 C -0.223 4.223 13 N -0.179 5.179 14 N -0.106 5.106 15 N -0.373 5.373 16 C -0.365 4.365 17 H 0.095 0.905 18 C -0.261 4.261 19 N -0.617 5.617 20 Si 0.794 3.206 21 H -0.191 1.191 22 H -0.227 1.227 23 H -0.224 1.224 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.093 0.907 27 H 0.102 0.898 28 H 0.073 0.927 29 H 0.247 0.753 30 H 0.130 0.870 31 H 0.124 0.876 32 H 0.154 0.846 33 H 0.128 0.872 34 H 0.250 0.750 35 H 0.236 0.764 36 H 0.206 0.794 37 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.510 -1.341 -14.873 15.917 hybrid contribution 0.080 -1.011 1.513 1.821 sum 5.589 -2.352 -13.360 14.672 Atomic orbital electron populations 1.22244 0.96826 1.01211 1.01341 1.20701 0.93591 0.95666 0.85154 0.92384 1.21589 0.79608 1.00638 0.98269 1.46006 1.08303 1.58417 1.23412 1.20437 0.89779 0.77080 0.81829 1.90681 1.71158 1.49772 1.34437 1.21762 0.91780 1.04999 1.00111 1.21915 0.71157 1.05921 0.99467 1.47716 1.09645 1.05776 1.45267 1.24483 0.92084 0.94763 1.07235 1.24273 0.98794 0.92343 1.06885 1.75060 1.12402 1.12657 1.17766 1.78259 0.94886 1.15938 1.21471 1.42609 1.78329 1.10341 1.06037 1.19599 1.34563 0.94157 0.88164 0.90509 1.25400 1.03125 0.96661 1.00942 1.69799 1.52665 1.10057 1.29175 0.85217 0.76555 0.78324 0.80512 1.19133 1.22692 1.22414 0.93790 0.93846 0.90748 0.89820 0.92671 0.75317 0.86962 0.87567 0.84638 0.87189 0.75031 0.76435 0.79429 0.94225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.88 9.49 71.98 0.68 -4.20 16 2 C 0.16 5.38 3.05 44.99 0.14 5.52 16 3 H 0.06 1.97 8.08 -2.39 -0.02 1.95 16 4 C 0.12 3.71 5.23 86.38 0.45 4.16 16 5 N -0.71 -20.71 5.39 -463.06 -2.49 -23.21 16 6 C 0.52 14.03 7.83 87.66 0.69 14.71 16 7 O -0.58 -18.08 15.98 -3.03 -0.05 -18.13 16 8 C -0.15 -3.06 5.83 29.85 0.17 -2.89 16 9 C 0.14 2.39 5.74 86.38 0.50 2.89 16 10 N -0.29 -5.95 3.44 -347.74 -1.20 -7.14 16 11 C -0.03 -0.52 11.57 83.49 0.97 0.44 16 12 C -0.07 -1.21 12.05 83.73 1.01 -0.20 16 13 N -0.31 -8.65 12.41 -58.25 -0.72 -9.37 16 14 N -0.13 -3.47 12.92 37.02 0.48 -3.00 16 15 N -0.73 -32.74 4.56 -322.93 -1.47 -34.21 16 16 C -0.23 -11.80 9.93 84.03 0.83 -10.97 16 17 H 0.08 3.76 7.83 -2.91 -0.02 3.74 16 18 C -0.07 -3.70 5.50 84.86 0.47 -3.23 16 19 N -0.97 -55.86 13.06 21.65 0.28 -55.57 16 20 Si 0.96 44.10 29.55 68.60 2.03 46.12 16 21 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 22 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 23 H -0.30 -13.72 7.11 99.48 0.71 -13.02 16 24 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.41 12.54 8.14 -92.71 -0.75 11.78 16 30 H 0.11 2.36 8.12 -2.39 -0.02 2.34 16 31 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.14 1.84 8.03 -2.39 -0.02 1.83 16 33 H 0.11 1.93 8.10 -2.39 -0.02 1.91 16 34 H 0.23 1.28 8.06 -2.91 -0.02 1.26 16 35 H 0.22 2.31 8.06 -2.91 -0.02 2.28 16 36 H 0.37 18.35 7.80 -92.70 -0.72 17.62 16 37 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -68.74 324.23 2.37 -66.37 By element: Atomic # 1 Polarization: 32.28 SS G_CDS: -0.39 Total: 31.89 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: 5.91 Total: 6.25 kcal Atomic # 7 Polarization: -127.38 SS G_CDS: -5.12 Total: -132.50 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.05 Total: -18.13 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -68.74 2.37 -66.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713307343.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.622 kcal (2) G-P(sol) polarization free energy of solvation -68.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds