Wall clock time and date at job start Mon Mar 30 2020 00:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47234 * 2 1 4 4 C 1.50700 * 109.47251 * 120.00603 * 2 1 3 5 5 O 1.21280 * 119.99870 * 119.99345 * 4 2 1 6 6 N 1.34773 * 119.99817 * 299.99858 * 4 2 1 7 7 C 1.46502 * 120.00230 * 359.97438 * 6 4 2 8 8 C 1.46503 * 120.00201 * 179.97438 * 6 4 2 9 9 C 1.52998 * 109.46967 * 89.99478 * 8 6 4 10 10 N 1.46503 * 109.47357 * 179.97438 * 9 8 6 11 11 C 1.36938 * 120.00343 * 180.02562 * 10 9 8 12 12 H 1.07996 * 119.99606 * 0.02562 * 11 10 9 13 13 C 1.38810 * 120.00083 * 180.02562 * 11 10 9 14 14 N 1.31626 * 119.99986 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00085 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47206 * 59.99918 * 15 13 11 17 17 H 1.48503 * 109.47283 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.46832 * 300.00007 * 15 13 11 19 19 N 1.46499 * 109.46727 * 240.00144 * 2 1 3 20 20 C 1.34430 * 126.82518 * 325.00239 * 19 2 1 21 21 N 1.30832 * 108.07731 * 179.97438 * 20 19 2 22 22 C 1.33244 * 109.83031 * 0.02562 * 21 20 19 23 23 N 1.30715 * 108.94545 * 359.97438 * 22 21 20 24 24 H 1.09007 * 109.46352 * 299.99569 * 1 2 3 25 25 H 1.08994 * 109.47279 * 59.99288 * 1 2 3 26 26 H 1.09001 * 109.47234 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46829 * 90.00070 * 7 6 4 28 28 H 1.09000 * 109.47110 * 209.99947 * 7 6 4 29 29 H 1.08995 * 109.46927 * 330.00469 * 7 6 4 30 30 H 1.08992 * 109.47547 * 209.99881 * 8 6 4 31 31 H 1.08994 * 109.46997 * 330.00319 * 8 6 4 32 32 H 1.08997 * 109.47736 * 300.00747 * 9 8 6 33 33 H 1.09006 * 109.46928 * 60.00803 * 9 8 6 34 34 H 0.97002 * 119.99641 * 0.02562 * 10 9 8 35 35 H 0.96999 * 119.99885 * 180.02562 * 14 13 11 36 36 H 1.07992 * 125.96099 * 0.02562 * 20 19 2 37 37 H 1.08005 * 125.52896 * 179.74108 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.7296 -1.6966 1.1190 6 7 1.7069 -0.2502 2.4545 7 6 0.8651 0.9413 2.5891 8 6 2.1947 -0.9412 3.6507 9 6 3.5427 -0.3495 4.0673 10 7 4.0304 -1.0400 5.2638 11 6 5.2267 -0.6783 5.8234 12 1 5.8105 0.1163 5.3829 13 6 5.6890 -1.3329 6.9568 14 7 4.9776 -2.3018 7.4933 15 14 7.3206 -0.8391 7.7205 16 1 7.2646 0.5878 8.1282 17 1 7.5850 -1.6840 8.9128 18 1 8.4089 -1.0280 6.7281 19 7 2.0183 -0.6906 -1.1962 20 6 1.4557 -1.7518 -1.8000 21 7 2.1931 -2.0692 -2.8330 22 6 3.2305 -1.2376 -2.9205 23 7 3.1670 -0.3753 -1.9402 24 1 -0.3632 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.1830 0.6437 2.6222 28 1 1.1230 1.4664 3.5088 29 1 1.0289 1.6001 1.7363 30 1 1.4768 -0.8156 4.4610 31 1 2.3155 -2.0024 3.4333 32 1 4.2608 -0.4749 3.2569 33 1 3.4220 0.7119 4.2847 34 1 3.5058 -1.7535 5.6596 35 1 5.3005 -2.7590 8.2855 36 1 0.5523 -2.2541 -1.4873 37 1 4.0011 -1.2729 -3.6764 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713585117.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:00 Heat of formation + Delta-G solvation = 87.659927 kcal Electronic energy + Delta-G solvation = -20204.307313 eV Core-core repulsion = 17020.157261 eV Total energy + Delta-G solvation = -3184.150052 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.24685 -40.12827 -36.17501 -35.44464 -34.31503 -31.66336 -31.35513 -30.23353 -28.18213 -27.03231 -25.25899 -23.83904 -22.29502 -21.92597 -21.25474 -19.59941 -17.55230 -17.51950 -17.09141 -16.07753 -15.79805 -15.25282 -14.81615 -14.67377 -14.43372 -13.99748 -13.86722 -13.49611 -13.34274 -13.06387 -12.89736 -12.74649 -12.58736 -11.99899 -11.79356 -11.34670 -11.06117 -10.92315 -10.71283 -10.46856 -10.15744 -10.12948 -9.85157 -9.78303 -9.53223 -8.89226 -8.71975 -6.96453 -5.78028 -3.07777 1.46428 1.97404 2.38584 2.86803 2.93939 3.44317 3.48498 3.49950 3.98649 4.13286 4.19483 4.36355 4.59814 4.63859 4.82223 4.94791 4.97210 5.09655 5.18182 5.33744 5.39658 5.53515 5.59223 5.71966 5.93604 6.00933 6.08055 6.32330 6.40335 6.58554 6.66586 6.81409 7.23226 7.68221 7.95681 7.99123 8.40256 9.51285 10.06153 10.41314 11.44755 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.027535 B = 0.003857 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.648399 B = 7257.201500 C = 7822.204459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.140 3.860 3 H 0.130 0.870 4 C 0.499 3.501 5 O -0.513 6.513 6 N -0.604 5.604 7 C 0.069 3.931 8 C 0.108 3.892 9 C 0.142 3.858 10 N -0.730 5.730 11 C -0.241 4.241 12 H 0.070 0.930 13 C -0.012 4.012 14 N -0.934 5.934 15 Si 0.910 3.090 16 H -0.285 1.285 17 H -0.290 1.290 18 H -0.285 1.285 19 N -0.361 5.361 20 C 0.269 3.731 21 N -0.547 5.547 22 C 0.199 3.801 23 N -0.312 5.312 24 H 0.102 0.898 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.022 0.978 33 H 0.019 0.981 34 H 0.384 0.616 35 H 0.256 0.744 36 H 0.214 0.786 37 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.829 7.279 -16.611 23.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.033 3.967 3 H 0.148 0.852 4 C 0.283 3.717 5 O -0.387 6.387 6 N -0.338 5.338 7 C -0.074 4.074 8 C -0.014 4.014 9 C 0.014 3.986 10 N -0.375 5.375 11 C -0.372 4.372 12 H 0.088 0.912 13 C -0.208 4.208 14 N -0.582 5.582 15 Si 0.740 3.260 16 H -0.212 1.212 17 H -0.216 1.216 18 H -0.212 1.212 19 N -0.152 5.152 20 C -0.028 4.028 21 N -0.274 5.274 22 C -0.104 4.104 23 N -0.139 5.139 24 H 0.121 0.879 25 H 0.099 0.901 26 H 0.093 0.907 27 H 0.082 0.918 28 H 0.101 0.899 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.040 0.960 33 H 0.037 0.963 34 H 0.218 0.782 35 H 0.066 0.934 36 H 0.230 0.770 37 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -13.848 7.161 -16.673 22.826 hybrid contribution 0.660 0.034 0.870 1.092 sum -13.188 7.196 -15.803 21.804 Atomic orbital electron populations 1.22446 0.90233 1.04847 1.05639 1.21195 0.96331 0.97962 0.81221 0.85203 1.20531 0.81322 0.85373 0.84482 1.90821 1.36255 1.25783 1.85815 1.47728 1.51058 1.29305 1.05753 1.22086 0.94406 0.87112 1.03831 1.21779 0.96918 0.97867 0.84818 1.20900 0.92173 0.95041 0.90505 1.42186 1.23594 1.42671 1.29025 1.19158 0.96414 1.14737 1.06903 0.91248 1.24749 0.98955 0.98565 0.98551 1.69652 1.38819 1.25895 1.23834 0.86230 0.83584 0.77588 0.78571 1.21216 1.21577 1.21186 1.50050 1.19016 1.24580 1.21532 1.25862 0.99209 0.87911 0.89842 1.70556 1.07271 1.28584 1.20999 1.25984 0.97216 0.90131 0.97096 1.78068 1.02521 1.25445 1.07853 0.87923 0.90061 0.90689 0.91761 0.89911 0.91089 0.89991 0.89585 0.96031 0.96340 0.78243 0.93386 0.76967 0.76652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.90 8.49 37.16 0.32 -0.58 16 2 C 0.14 1.37 2.96 -69.08 -0.20 1.17 16 3 H 0.13 1.11 7.40 -51.93 -0.38 0.72 16 4 C 0.50 6.97 7.15 -10.99 -0.08 6.89 16 5 O -0.51 -9.96 16.00 5.56 0.09 -9.87 16 6 N -0.60 -7.55 2.87 -181.58 -0.52 -8.07 16 7 C 0.07 0.50 8.80 59.85 0.53 1.03 16 8 C 0.11 1.76 5.52 -4.04 -0.02 1.74 16 9 C 0.14 2.99 6.58 -4.04 -0.03 2.96 16 10 N -0.73 -19.08 5.60 -59.91 -0.34 -19.41 16 11 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 12 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 13 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 14 N -0.93 -28.60 13.06 55.49 0.72 -27.88 16 15 Si 0.91 22.82 29.55 -169.99 -5.02 17.80 16 16 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 17 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 18 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 19 N -0.36 -4.49 3.04 -57.24 -0.17 -4.66 16 20 C 0.27 3.09 11.77 -90.65 -1.07 2.02 16 21 N -0.55 -7.26 11.19 -15.83 -0.18 -7.43 16 22 C 0.20 2.52 13.03 -91.81 -1.20 1.33 16 23 N -0.31 -4.48 12.70 29.29 0.37 -4.11 16 24 H 0.10 0.35 4.53 -51.93 -0.24 0.12 16 25 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.07 0.37 7.22 -51.93 -0.37 -0.01 16 27 H 0.06 0.31 6.95 -51.93 -0.36 -0.05 16 28 H 0.08 0.64 8.07 -51.93 -0.42 0.22 16 29 H 0.07 0.36 6.01 -51.93 -0.31 0.04 16 30 H 0.08 1.19 8.07 -51.93 -0.42 0.77 16 31 H 0.09 1.59 7.42 -51.93 -0.39 1.20 16 32 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.38 10.36 7.67 -40.82 -0.31 10.05 16 35 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 36 H 0.21 1.57 7.32 -52.49 -0.38 1.19 16 37 H 0.22 1.90 8.06 -52.48 -0.42 1.48 16 LS Contribution 314.42 15.07 4.74 4.74 Total: -1.00 -38.47 314.42 -7.13 -45.61 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -4.83 Total: 4.31 kcal Atomic # 6 Polarization: 10.98 SS G_CDS: -2.00 Total: 8.98 kcal Atomic # 7 Polarization: -71.45 SS G_CDS: -0.11 Total: -71.56 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.87 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -38.47 -7.13 -45.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713585117.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.267 kcal (2) G-P(sol) polarization free energy of solvation -38.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds