Wall clock time and date at job start Mon Mar 30 2020 00:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47234 * 2 1 4 4 C 1.50700 * 109.47251 * 120.00603 * 2 1 3 5 5 O 1.21280 * 119.99870 * 119.99345 * 4 2 1 6 6 N 1.34773 * 119.99817 * 299.99858 * 4 2 1 7 7 C 1.46502 * 120.00230 * 359.97438 * 6 4 2 8 8 C 1.46503 * 120.00201 * 179.97438 * 6 4 2 9 9 C 1.52998 * 109.46967 * 89.99478 * 8 6 4 10 10 N 1.46503 * 109.47357 * 179.97438 * 9 8 6 11 11 C 1.36938 * 120.00343 * 180.02562 * 10 9 8 12 12 H 1.07996 * 119.99606 * 0.02562 * 11 10 9 13 13 C 1.38810 * 120.00083 * 180.02562 * 11 10 9 14 14 N 1.31626 * 119.99986 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00085 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47206 * 59.99918 * 15 13 11 17 17 H 1.48503 * 109.47283 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.46832 * 300.00007 * 15 13 11 19 19 N 1.46499 * 109.46727 * 240.00144 * 2 1 3 20 20 C 1.34430 * 126.82518 * 325.00239 * 19 2 1 21 21 N 1.30832 * 108.07731 * 179.97438 * 20 19 2 22 22 C 1.33244 * 109.83031 * 0.02562 * 21 20 19 23 23 N 1.30715 * 108.94545 * 359.97438 * 22 21 20 24 24 H 1.09007 * 109.46352 * 299.99569 * 1 2 3 25 25 H 1.08994 * 109.47279 * 59.99288 * 1 2 3 26 26 H 1.09001 * 109.47234 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46829 * 90.00070 * 7 6 4 28 28 H 1.09000 * 109.47110 * 209.99947 * 7 6 4 29 29 H 1.08995 * 109.46927 * 330.00469 * 7 6 4 30 30 H 1.08992 * 109.47547 * 209.99881 * 8 6 4 31 31 H 1.08994 * 109.46997 * 330.00319 * 8 6 4 32 32 H 1.08997 * 109.47736 * 300.00747 * 9 8 6 33 33 H 1.09006 * 109.46928 * 60.00803 * 9 8 6 34 34 H 0.97002 * 119.99641 * 0.02562 * 10 9 8 35 35 H 0.96999 * 119.99885 * 180.02562 * 14 13 11 36 36 H 1.07992 * 125.96099 * 0.02562 * 20 19 2 37 37 H 1.08005 * 125.52896 * 179.74108 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.7296 -1.6966 1.1190 6 7 1.7069 -0.2502 2.4545 7 6 0.8651 0.9413 2.5891 8 6 2.1947 -0.9412 3.6507 9 6 3.5427 -0.3495 4.0673 10 7 4.0304 -1.0400 5.2638 11 6 5.2267 -0.6783 5.8234 12 1 5.8105 0.1163 5.3829 13 6 5.6890 -1.3329 6.9568 14 7 4.9776 -2.3018 7.4933 15 14 7.3206 -0.8391 7.7205 16 1 7.2646 0.5878 8.1282 17 1 7.5850 -1.6840 8.9128 18 1 8.4089 -1.0280 6.7281 19 7 2.0183 -0.6906 -1.1962 20 6 1.4557 -1.7518 -1.8000 21 7 2.1931 -2.0692 -2.8330 22 6 3.2305 -1.2376 -2.9205 23 7 3.1670 -0.3753 -1.9402 24 1 -0.3632 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.1830 0.6437 2.6222 28 1 1.1230 1.4664 3.5088 29 1 1.0289 1.6001 1.7363 30 1 1.4768 -0.8156 4.4610 31 1 2.3155 -2.0024 3.4333 32 1 4.2608 -0.4749 3.2569 33 1 3.4220 0.7119 4.2847 34 1 3.5058 -1.7535 5.6596 35 1 5.3005 -2.7590 8.2855 36 1 0.5523 -2.2541 -1.4873 37 1 4.0011 -1.2729 -3.6764 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713585117.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:59 Heat of formation + Delta-G solvation = 60.107237 kcal Electronic energy + Delta-G solvation = -20205.502087 eV Core-core repulsion = 17020.157261 eV Total energy + Delta-G solvation = -3185.344827 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.14653 -41.19357 -37.54992 -36.49743 -35.86471 -33.45565 -32.38091 -31.27317 -29.57404 -27.89501 -26.33505 -25.39696 -23.72015 -22.93528 -22.44868 -20.64135 -19.28378 -18.47635 -18.31758 -17.28379 -16.77169 -16.51357 -16.22396 -15.86865 -15.44219 -15.26304 -15.15801 -15.07127 -14.50058 -14.40499 -13.68607 -13.65429 -13.28121 -13.12861 -12.91141 -12.80074 -12.61079 -12.46417 -12.35925 -12.20427 -11.91761 -11.47812 -11.07942 -11.01745 -10.81515 -10.54662 -9.81812 -9.11657 -8.02032 -5.33245 0.55264 1.17305 1.34393 1.43655 1.47533 1.53736 1.90235 2.00340 2.52269 3.18264 3.31195 3.43895 3.44065 3.71905 3.93225 4.00127 4.06742 4.17200 4.24268 4.29561 4.51037 4.55326 4.67052 4.72197 4.88142 4.93469 5.02345 5.11504 5.22713 5.35526 5.42933 5.44843 5.78253 6.19431 6.23530 6.93347 7.06073 7.25830 7.96669 8.22227 9.20939 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.027535 B = 0.003857 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.648399 B = 7257.201500 C = 7822.204459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.145 3.855 3 H 0.145 0.855 4 C 0.492 3.508 5 O -0.580 6.580 6 N -0.598 5.598 7 C 0.056 3.944 8 C 0.123 3.877 9 C 0.148 3.852 10 N -0.743 5.743 11 C -0.257 4.257 12 H 0.071 0.929 13 C -0.069 4.069 14 N -0.966 5.966 15 Si 0.977 3.023 16 H -0.272 1.272 17 H -0.289 1.289 18 H -0.282 1.282 19 N -0.368 5.368 20 C 0.270 3.730 21 N -0.574 5.574 22 C 0.194 3.806 23 N -0.352 5.352 24 H 0.126 0.874 25 H 0.101 0.899 26 H 0.079 0.921 27 H 0.101 0.899 28 H 0.081 0.919 29 H 0.099 0.901 30 H 0.106 0.894 31 H 0.057 0.943 32 H -0.010 1.010 33 H 0.034 0.966 34 H 0.377 0.623 35 H 0.255 0.745 36 H 0.249 0.751 37 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.472 9.016 -16.951 25.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.038 3.962 3 H 0.163 0.837 4 C 0.279 3.721 5 O -0.459 6.459 6 N -0.330 5.330 7 C -0.085 4.085 8 C 0.000 4.000 9 C 0.020 3.980 10 N -0.386 5.386 11 C -0.388 4.388 12 H 0.089 0.911 13 C -0.262 4.262 14 N -0.616 5.616 15 Si 0.805 3.195 16 H -0.197 1.197 17 H -0.215 1.215 18 H -0.209 1.209 19 N -0.159 5.159 20 C -0.027 4.027 21 N -0.302 5.302 22 C -0.109 4.109 23 N -0.179 5.179 24 H 0.144 0.856 25 H 0.119 0.881 26 H 0.098 0.902 27 H 0.119 0.881 28 H 0.100 0.900 29 H 0.118 0.882 30 H 0.124 0.876 31 H 0.076 0.924 32 H 0.008 0.992 33 H 0.052 0.948 34 H 0.209 0.791 35 H 0.063 0.937 36 H 0.265 0.735 37 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -15.539 8.974 -17.029 24.738 hybrid contribution 1.144 -0.485 0.950 1.564 sum -14.395 8.489 -16.079 23.190 Atomic orbital electron populations 1.22539 0.86121 1.05919 1.07757 1.21479 0.99179 0.97303 0.78196 0.83748 1.21385 0.80136 0.84658 0.85895 1.90791 1.39313 1.28907 1.86853 1.47784 1.50843 1.30286 1.04133 1.22545 0.95347 0.85419 1.05175 1.21374 0.95154 0.96390 0.87108 1.20959 0.93790 0.95584 0.87675 1.42366 1.23095 1.42875 1.30280 1.19538 0.97458 1.14682 1.07138 0.91129 1.25611 1.02594 0.98779 0.99221 1.69802 1.40526 1.27036 1.24220 0.85171 0.79146 0.77770 0.77417 1.19748 1.21526 1.20884 1.50236 1.18576 1.25103 1.21954 1.26582 0.99723 0.87330 0.89034 1.70566 1.07996 1.29315 1.22286 1.26575 0.97578 0.89507 0.97231 1.77976 1.04090 1.26929 1.08931 0.85559 0.88055 0.90216 0.88126 0.90009 0.88238 0.87575 0.92406 0.99203 0.94849 0.79132 0.93661 0.73534 0.74163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.04 8.49 71.98 0.61 -0.43 16 2 C 0.14 2.52 2.96 44.25 0.13 2.65 16 3 H 0.15 2.07 7.40 -2.39 -0.02 2.05 16 4 C 0.49 13.39 7.15 87.66 0.63 14.01 16 5 O -0.58 -23.24 16.00 -3.03 -0.05 -23.29 16 6 N -0.60 -13.97 2.87 -846.78 -2.43 -16.40 16 7 C 0.06 0.60 8.80 127.77 1.12 1.72 16 8 C 0.12 4.00 5.52 86.38 0.48 4.47 16 9 C 0.15 6.27 6.58 86.38 0.57 6.84 16 10 N -0.74 -39.55 5.60 -343.45 -1.92 -41.48 16 11 C -0.26 -14.99 9.99 84.03 0.84 -14.15 16 12 H 0.07 4.01 7.83 -2.91 -0.02 3.98 16 13 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 14 N -0.97 -59.91 13.06 21.65 0.28 -59.63 16 15 Si 0.98 47.01 29.55 68.60 2.03 49.04 16 16 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 17 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 18 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 19 N -0.37 -8.76 3.04 -335.02 -1.02 -9.78 16 20 C 0.27 5.87 11.77 180.36 2.12 7.99 16 21 N -0.57 -14.93 11.19 -204.00 -2.28 -17.21 16 22 C 0.19 4.90 13.03 180.76 2.36 7.25 16 23 N -0.35 -10.06 12.70 -61.24 -0.78 -10.84 16 24 H 0.13 0.19 4.53 -2.38 -0.01 0.18 16 25 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 26 H 0.08 0.48 7.22 -2.39 -0.02 0.46 16 27 H 0.10 0.43 6.95 -2.39 -0.02 0.42 16 28 H 0.08 0.97 8.07 -2.39 -0.02 0.95 16 29 H 0.10 0.54 6.01 -2.39 -0.01 0.53 16 30 H 0.11 2.92 8.07 -2.39 -0.02 2.90 16 31 H 0.06 2.22 7.42 -2.39 -0.02 2.20 16 32 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 33 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.38 20.84 7.67 -92.71 -0.71 20.13 16 35 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 36 H 0.25 3.10 7.32 -2.91 -0.02 3.08 16 37 H 0.24 4.18 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -87.19 314.42 3.53 -83.66 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 0.38 Total: 19.17 kcal Atomic # 6 Polarization: 17.43 SS G_CDS: 9.32 Total: 26.75 kcal Atomic # 7 Polarization: -147.18 SS G_CDS: -8.15 Total: -155.34 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -0.05 Total: -23.29 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.04 kcal Total: -87.19 3.53 -83.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713585117.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.766 kcal (2) G-P(sol) polarization free energy of solvation -87.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds