Wall clock time and date at job start Mon Mar 30 2020 00:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47341 * 2 1 4 4 C 1.53007 * 109.46924 * 240.00139 * 2 1 3 5 5 N 1.46498 * 109.46991 * 65.00265 * 4 2 1 6 6 C 1.36938 * 119.99865 * 180.02562 * 5 4 2 7 7 H 1.08002 * 119.99926 * 359.97438 * 6 5 4 8 8 C 1.38811 * 120.00217 * 179.97438 * 6 5 4 9 9 N 1.31622 * 119.99960 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00201 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47332 * 59.99670 * 10 8 6 12 12 H 1.48494 * 109.47012 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.46725 * 299.99803 * 10 8 6 14 14 C 1.52995 * 109.47208 * 120.00169 * 2 1 3 15 15 N 1.46501 * 109.47321 * 295.00014 * 14 2 1 16 16 C 1.34770 * 120.00120 * 179.97438 * 15 14 2 17 17 O 1.21554 * 120.00278 * 359.97438 * 16 15 14 18 18 C 1.47807 * 119.99694 * 180.02562 * 16 15 14 19 19 C 1.40925 * 127.23221 * 179.97438 * 18 16 15 20 20 N 1.31138 * 105.77323 * 179.76872 * 19 18 16 21 21 N 1.28522 * 109.05907 * 0.22671 * 20 19 18 22 22 C 1.46497 * 124.44410 * 179.97438 * 21 20 19 23 23 N 1.28587 * 111.11004 * 359.97438 * 21 20 19 24 24 H 1.09000 * 109.47341 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47150 * 300.00117 * 1 2 3 26 26 H 1.09010 * 109.47194 * 59.99910 * 1 2 3 27 27 H 1.08997 * 109.47078 * 185.00030 * 4 2 1 28 28 H 1.08997 * 109.47034 * 305.00071 * 4 2 1 29 29 H 0.96996 * 120.00462 * 359.97438 * 5 4 2 30 30 H 0.96996 * 119.99943 * 179.97438 * 9 8 6 31 31 H 1.08999 * 109.47187 * 174.99788 * 14 2 1 32 32 H 1.09007 * 109.46750 * 54.99694 * 14 2 1 33 33 H 0.97008 * 119.99545 * 0.02562 * 15 14 2 34 34 H 1.08002 * 127.11735 * 0.03765 * 19 18 16 35 35 H 1.09004 * 109.46928 * 90.02504 * 22 21 20 36 36 H 1.08997 * 109.47465 * 210.02409 * 22 21 20 37 37 H 1.09004 * 109.47014 * 330.03112 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 1.6524 0.0354 -2.4424 6 6 2.0010 -0.4207 -3.6856 7 1 2.5620 -1.3381 -3.7865 8 6 1.6334 0.2959 -4.8162 9 7 0.9493 1.4137 -4.6932 10 14 2.1083 -0.3267 -6.5121 11 1 1.5147 -1.6703 -6.7304 12 1 1.5999 0.6121 -7.5443 13 1 3.5874 -0.4171 -6.6099 14 6 2.0400 -0.7213 1.2492 15 7 1.6525 0.0353 2.4424 16 6 1.9956 -0.4137 3.6659 17 8 2.6262 -1.4466 3.7795 18 6 1.6041 0.3493 4.8697 19 6 1.8792 0.0233 6.2128 20 7 1.3461 0.9836 6.9292 21 7 0.7854 1.8318 6.1431 22 6 0.0859 3.0390 6.5899 23 7 0.9190 1.4819 4.9130 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8901 27 1 3.1263 -0.7995 -1.2057 28 1 1.6053 -1.7198 -1.2952 29 1 1.1483 0.8591 -2.3518 30 1 0.6927 1.9146 -5.4832 31 1 3.1263 -0.7995 1.2055 32 1 1.6053 -1.7198 1.2950 33 1 1.1482 0.8590 2.3517 34 1 2.4212 -0.8371 6.5767 35 1 0.7912 3.8682 6.6450 36 1 -0.7067 3.2826 5.8824 37 1 -0.3473 2.8644 7.5748 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714438478.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:10 Heat of formation + Delta-G solvation = 79.070566 kcal Electronic energy + Delta-G solvation = -19443.807715 eV Core-core repulsion = 16259.285200 eV Total energy + Delta-G solvation = -3184.522515 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.93776 -39.58741 -36.82781 -34.42195 -34.13232 -33.09449 -32.28298 -30.04928 -28.48584 -26.60575 -25.52050 -23.90249 -22.41800 -22.27640 -20.58888 -19.88910 -18.10093 -17.31618 -17.28137 -16.79701 -15.97160 -15.40675 -15.09347 -14.64636 -14.29860 -14.06503 -13.62409 -13.45745 -13.36038 -13.03507 -12.61671 -12.31111 -12.20783 -12.02481 -11.33440 -11.04997 -10.89554 -10.75176 -10.70048 -10.57771 -10.45155 -10.27141 -10.00290 -9.75429 -9.66299 -9.05736 -8.85815 -6.90918 -5.75626 -3.03980 1.05333 1.67495 1.82934 3.02756 3.13728 3.45715 3.49834 3.50971 3.64764 4.48783 4.54188 4.60560 4.66315 4.81563 4.86082 5.07123 5.23206 5.37478 5.40990 5.59084 5.67403 5.82880 5.97744 5.98790 6.11650 6.17560 6.26127 6.40009 6.45479 6.67316 6.79178 6.88549 7.38397 7.71379 7.81483 8.06901 8.43643 9.54755 10.12290 10.47036 11.47379 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.041177 B = 0.002977 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.820713 B = 9402.078130 C = 9925.429972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 H 0.077 0.923 4 C 0.161 3.839 5 N -0.731 5.731 6 C -0.239 4.239 7 H 0.070 0.930 8 C -0.015 4.015 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.126 3.874 15 N -0.708 5.708 16 C 0.606 3.394 17 O -0.529 6.529 18 C -0.044 4.044 19 C 0.035 3.965 20 N -0.293 5.293 21 N -0.145 5.145 22 C 0.103 3.897 23 N -0.249 5.249 24 H 0.053 0.947 25 H 0.042 0.958 26 H 0.070 0.930 27 H 0.022 0.978 28 H 0.023 0.977 29 H 0.384 0.616 30 H 0.255 0.745 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.407 0.593 34 H 0.209 0.791 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.350 2.684 23.710 23.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.130 4.130 3 H 0.096 0.904 4 C 0.033 3.967 5 N -0.376 5.376 6 C -0.370 4.370 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.584 5.584 10 Si 0.739 3.261 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.213 1.213 14 C 0.002 3.998 15 N -0.359 5.359 16 C 0.389 3.611 17 O -0.404 6.404 18 C -0.207 4.207 19 C -0.149 4.149 20 N -0.133 5.133 21 N -0.047 5.047 22 C -0.036 4.036 23 N -0.098 5.098 24 H 0.072 0.928 25 H 0.062 0.938 26 H 0.089 0.911 27 H 0.039 0.961 28 H 0.041 0.959 29 H 0.218 0.782 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.243 0.757 34 H 0.226 0.774 35 H 0.112 0.888 36 H 0.125 0.875 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.486 2.965 24.039 24.349 hybrid contribution 0.229 -0.255 -1.216 1.263 sum -2.257 2.710 22.823 23.094 Atomic orbital electron populations 1.21801 0.94625 1.01979 1.01561 1.21561 0.96789 1.00582 0.94075 0.90437 1.20574 0.96645 0.94205 0.85312 1.42332 1.66945 1.27699 1.00575 1.19199 1.28702 1.05432 0.83668 0.91185 1.24735 1.01033 0.97416 0.97852 1.69647 1.43534 1.16615 1.28598 0.86252 0.78018 0.77698 0.84132 1.21268 1.21723 1.21265 1.21517 1.00436 0.95313 0.82498 1.45921 1.56646 1.27961 1.05350 1.16607 0.79457 0.83765 0.81320 1.90821 1.40207 1.23330 1.86048 1.23149 1.05356 0.95503 0.96674 1.24866 1.01497 0.99362 0.89134 1.74024 1.12699 1.01816 1.24713 1.48050 1.37401 1.19161 1.00122 1.22270 0.97461 0.81041 1.02848 1.74389 1.16735 1.13924 1.04772 0.92767 0.93848 0.91119 0.96054 0.95927 0.78196 0.93492 0.90898 0.90901 0.75737 0.77447 0.88761 0.87457 0.87566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 8.94 37.16 0.33 -1.80 16 2 C -0.11 -1.72 2.46 -90.62 -0.22 -1.94 16 3 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 4 C 0.16 3.18 5.65 -4.04 -0.02 3.16 16 5 N -0.73 -18.34 5.33 -59.91 -0.32 -18.66 16 6 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 7 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 8 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 9 N -0.94 -28.21 13.06 55.49 0.72 -27.49 16 10 Si 0.91 22.49 29.55 -169.99 -5.02 17.46 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 C 0.13 1.74 5.06 -4.04 -0.02 1.72 16 15 N -0.71 -8.99 5.28 -61.26 -0.32 -9.31 16 16 C 0.61 8.31 7.83 -12.35 -0.10 8.22 16 17 O -0.53 -8.64 16.95 5.32 0.09 -8.55 16 18 C -0.04 -0.53 7.21 -82.68 -0.60 -1.13 16 19 C 0.03 0.38 12.04 -16.83 -0.20 0.17 16 20 N -0.29 -3.05 12.01 30.90 0.37 -2.68 16 21 N -0.14 -1.35 4.35 -16.63 -0.07 -1.42 16 22 C 0.10 0.41 11.55 59.85 0.69 1.10 16 23 N -0.25 -2.77 11.84 33.42 0.40 -2.38 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.04 0.54 7.18 -51.93 -0.37 0.17 16 26 H 0.07 1.23 7.18 -51.92 -0.37 0.86 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.38 10.02 6.85 -40.82 -0.28 9.74 16 30 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 1.03 8.14 -51.92 -0.42 0.60 16 33 H 0.41 4.66 7.42 -40.82 -0.30 4.35 16 34 H 0.21 1.73 8.06 -52.49 -0.42 1.30 16 35 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 36 H 0.11 0.28 8.14 -51.93 -0.42 -0.15 16 37 H 0.11 0.23 8.14 -51.93 -0.42 -0.19 16 LS Contribution 322.03 15.07 4.85 4.85 Total: -1.00 -34.27 322.03 -4.79 -39.06 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -5.10 Total: 6.98 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -0.38 Total: 2.13 kcal Atomic # 7 Polarization: -62.72 SS G_CDS: 0.78 Total: -61.94 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.09 Total: -8.55 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.27 -4.79 -39.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714438478.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.130 kcal (2) G-P(sol) polarization free energy of solvation -34.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds