Wall clock time and date at job start Mon Mar 30 2020 00:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47341 * 2 1 4 4 C 1.53007 * 109.46924 * 240.00139 * 2 1 3 5 5 N 1.46498 * 109.46991 * 65.00265 * 4 2 1 6 6 C 1.36938 * 119.99865 * 180.02562 * 5 4 2 7 7 H 1.08002 * 119.99926 * 359.97438 * 6 5 4 8 8 C 1.38811 * 120.00217 * 179.97438 * 6 5 4 9 9 N 1.31622 * 119.99960 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00201 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47332 * 59.99670 * 10 8 6 12 12 H 1.48494 * 109.47012 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.46725 * 299.99803 * 10 8 6 14 14 C 1.52995 * 109.47208 * 120.00169 * 2 1 3 15 15 N 1.46501 * 109.47321 * 295.00014 * 14 2 1 16 16 C 1.34770 * 120.00120 * 179.97438 * 15 14 2 17 17 O 1.21554 * 120.00278 * 359.97438 * 16 15 14 18 18 C 1.47807 * 119.99694 * 180.02562 * 16 15 14 19 19 C 1.40925 * 127.23221 * 179.97438 * 18 16 15 20 20 N 1.31138 * 105.77323 * 179.76872 * 19 18 16 21 21 N 1.28522 * 109.05907 * 0.22671 * 20 19 18 22 22 C 1.46497 * 124.44410 * 179.97438 * 21 20 19 23 23 N 1.28587 * 111.11004 * 359.97438 * 21 20 19 24 24 H 1.09000 * 109.47341 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47150 * 300.00117 * 1 2 3 26 26 H 1.09010 * 109.47194 * 59.99910 * 1 2 3 27 27 H 1.08997 * 109.47078 * 185.00030 * 4 2 1 28 28 H 1.08997 * 109.47034 * 305.00071 * 4 2 1 29 29 H 0.96996 * 120.00462 * 359.97438 * 5 4 2 30 30 H 0.96996 * 119.99943 * 179.97438 * 9 8 6 31 31 H 1.08999 * 109.47187 * 174.99788 * 14 2 1 32 32 H 1.09007 * 109.46750 * 54.99694 * 14 2 1 33 33 H 0.97008 * 119.99545 * 0.02562 * 15 14 2 34 34 H 1.08002 * 127.11735 * 0.03765 * 19 18 16 35 35 H 1.09004 * 109.46928 * 90.02504 * 22 21 20 36 36 H 1.08997 * 109.47465 * 210.02409 * 22 21 20 37 37 H 1.09004 * 109.47014 * 330.03112 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 1.6524 0.0354 -2.4424 6 6 2.0010 -0.4207 -3.6856 7 1 2.5620 -1.3381 -3.7865 8 6 1.6334 0.2959 -4.8162 9 7 0.9493 1.4137 -4.6932 10 14 2.1083 -0.3267 -6.5121 11 1 1.5147 -1.6703 -6.7304 12 1 1.5999 0.6121 -7.5443 13 1 3.5874 -0.4171 -6.6099 14 6 2.0400 -0.7213 1.2492 15 7 1.6525 0.0353 2.4424 16 6 1.9956 -0.4137 3.6659 17 8 2.6262 -1.4466 3.7795 18 6 1.6041 0.3493 4.8697 19 6 1.8792 0.0233 6.2128 20 7 1.3461 0.9836 6.9292 21 7 0.7854 1.8318 6.1431 22 6 0.0859 3.0390 6.5899 23 7 0.9190 1.4819 4.9130 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8901 27 1 3.1263 -0.7995 -1.2057 28 1 1.6053 -1.7198 -1.2952 29 1 1.1483 0.8591 -2.3518 30 1 0.6927 1.9146 -5.4832 31 1 3.1263 -0.7995 1.2055 32 1 1.6053 -1.7198 1.2950 33 1 1.1482 0.8590 2.3517 34 1 2.4212 -0.8371 6.5767 35 1 0.7912 3.8682 6.6450 36 1 -0.7067 3.2826 5.8824 37 1 -0.3473 2.8644 7.5748 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714438478.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:10 Heat of formation + Delta-G solvation = 52.763586 kcal Electronic energy + Delta-G solvation = -19444.948471 eV Core-core repulsion = 16259.285200 eV Total energy + Delta-G solvation = -3185.663271 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.71218 -40.69054 -38.23552 -36.00046 -34.82741 -34.26772 -33.57029 -31.85953 -29.16276 -27.77499 -27.14623 -25.15748 -23.91269 -23.11547 -21.66363 -21.19923 -19.35621 -18.71633 -18.04341 -17.89931 -17.20596 -16.53030 -16.47565 -15.78885 -15.59553 -15.46846 -15.26940 -14.70860 -14.18405 -13.87156 -13.64634 -13.58670 -13.56229 -13.04183 -12.94780 -12.76041 -12.21049 -12.18250 -12.13723 -11.99176 -11.75981 -11.64792 -11.56178 -11.34361 -10.91669 -10.53285 -10.12678 -8.97670 -7.93878 -5.22080 0.18188 0.86495 1.25187 1.48752 1.51621 1.57633 2.02655 2.13471 2.57992 2.86390 3.39810 3.69900 3.74943 3.97436 3.99312 4.09087 4.29730 4.31896 4.36673 4.48847 4.55577 4.67608 4.72303 4.77038 4.92579 4.95496 5.04850 5.14733 5.27359 5.38602 5.47640 5.51574 5.51850 6.28654 6.36609 6.97397 7.07535 7.35558 8.11248 8.35114 9.29536 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.041177 B = 0.002977 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.820713 B = 9402.078130 C = 9925.429972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.095 4.095 3 H 0.077 0.923 4 C 0.157 3.843 5 N -0.742 5.742 6 C -0.247 4.247 7 H 0.075 0.925 8 C -0.075 4.075 9 N -0.969 5.969 10 Si 0.973 3.027 11 H -0.278 1.278 12 H -0.295 1.295 13 H -0.278 1.278 14 C 0.137 3.863 15 N -0.700 5.700 16 C 0.609 3.391 17 O -0.560 6.560 18 C -0.067 4.067 19 C 0.030 3.970 20 N -0.299 5.299 21 N -0.134 5.134 22 C 0.087 3.913 23 N -0.253 5.253 24 H 0.054 0.946 25 H 0.070 0.930 26 H 0.043 0.957 27 H 0.023 0.977 28 H 0.024 0.976 29 H 0.376 0.624 30 H 0.251 0.749 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.414 0.586 34 H 0.224 0.776 35 H 0.112 0.888 36 H 0.122 0.878 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.498 2.856 24.866 25.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.114 4.114 3 H 0.095 0.905 4 C 0.030 3.970 5 N -0.386 5.386 6 C -0.379 4.379 7 H 0.093 0.907 8 C -0.267 4.267 9 N -0.620 5.620 10 Si 0.802 3.198 11 H -0.204 1.204 12 H -0.221 1.221 13 H -0.205 1.205 14 C 0.013 3.987 15 N -0.351 5.351 16 C 0.393 3.607 17 O -0.437 6.437 18 C -0.228 4.228 19 C -0.152 4.152 20 N -0.140 5.140 21 N -0.039 5.039 22 C -0.050 4.050 23 N -0.104 5.104 24 H 0.073 0.927 25 H 0.089 0.911 26 H 0.062 0.938 27 H 0.040 0.960 28 H 0.042 0.958 29 H 0.209 0.791 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.251 0.749 34 H 0.240 0.760 35 H 0.130 0.870 36 H 0.141 0.859 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.629 3.125 25.225 25.553 hybrid contribution 0.245 -0.253 -1.457 1.499 sum -2.384 2.873 23.768 24.059 Atomic orbital electron populations 1.21728 0.94019 1.02037 1.01548 1.21340 0.97095 1.00099 0.92892 0.90475 1.20724 0.96692 0.94157 0.85391 1.42514 1.66825 1.27842 1.01376 1.19609 1.27869 1.05342 0.85044 0.90746 1.25547 1.01720 0.97905 1.01532 1.69799 1.45081 1.17901 1.29186 0.85218 0.77893 0.77166 0.79521 1.20446 1.22098 1.20460 1.21284 1.00185 0.95136 0.82099 1.45785 1.56504 1.28032 1.04822 1.16754 0.78768 0.83398 0.81783 1.90800 1.41666 1.24725 1.86541 1.22908 1.07084 0.96347 0.96454 1.25177 1.01429 0.99938 0.88672 1.74037 1.13026 1.02050 1.24838 1.48638 1.36181 1.19600 0.99504 1.22806 0.98162 0.79741 1.04281 1.74345 1.16633 1.13585 1.05798 0.92675 0.91099 0.93804 0.95953 0.95781 0.79132 0.93978 0.91152 0.90827 0.74852 0.75953 0.86959 0.85917 0.85568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.95 8.94 71.98 0.64 -3.31 16 2 C -0.10 -2.87 2.46 -10.79 -0.03 -2.90 16 3 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 4 C 0.16 6.17 5.65 86.38 0.49 6.66 16 5 N -0.74 -37.43 5.33 -343.45 -1.83 -39.26 16 6 C -0.25 -13.84 9.99 84.03 0.84 -13.00 16 7 H 0.07 4.02 7.83 -2.91 -0.02 3.99 16 8 C -0.07 -4.30 5.50 84.86 0.47 -3.84 16 9 N -0.97 -59.09 13.06 21.65 0.28 -58.81 16 10 Si 0.97 46.23 29.55 68.60 2.03 48.26 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 12 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 13 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 14 C 0.14 3.64 5.06 86.38 0.44 4.07 16 15 N -0.70 -16.90 5.28 -466.02 -2.46 -19.37 16 16 C 0.61 16.19 7.83 86.78 0.68 16.87 16 17 O -0.56 -18.03 16.95 -3.89 -0.07 -18.09 16 18 C -0.07 -1.54 7.21 42.25 0.30 -1.24 16 19 C 0.03 0.62 12.04 85.46 1.03 1.65 16 20 N -0.30 -5.71 12.01 -56.16 -0.67 -6.38 16 21 N -0.13 -2.22 4.35 -206.54 -0.90 -3.12 16 22 C 0.09 0.46 11.55 127.77 1.48 1.93 16 23 N -0.25 -5.20 11.84 -48.16 -0.57 -5.77 16 24 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.07 1.65 7.18 -2.39 -0.02 1.63 16 26 H 0.04 1.52 7.18 -2.38 -0.02 1.50 16 27 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.38 19.93 6.85 -92.71 -0.63 19.29 16 30 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 31 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 33 H 0.41 8.79 7.42 -92.70 -0.69 8.10 16 34 H 0.22 3.49 8.06 -2.91 -0.02 3.47 16 35 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 36 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 37 H 0.13 0.18 8.14 -2.38 -0.02 0.16 16 Total: -1.00 -72.70 322.03 1.92 -70.78 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: -0.23 Total: 24.88 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: 6.34 Total: 6.89 kcal Atomic # 7 Polarization: -126.56 SS G_CDS: -6.15 Total: -132.71 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.07 Total: -18.09 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -72.70 1.92 -70.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714438478.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.542 kcal (2) G-P(sol) polarization free energy of solvation -72.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds