Wall clock time and date at job start Mon Mar 30 2020 00:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46998 * 2 1 4 4 C 1.52996 * 109.46909 * 120.00202 * 2 1 3 5 5 N 1.46498 * 109.47059 * 294.99709 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31624 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47213 * 60.00246 * 10 8 6 12 12 H 1.48502 * 109.47317 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47081 * 299.99875 * 10 8 6 14 14 C 1.53004 * 109.46816 * 240.00146 * 2 1 3 15 15 N 1.46500 * 109.47129 * 65.00299 * 14 2 1 16 16 C 1.34771 * 120.00026 * 179.97438 * 15 14 2 17 17 O 1.21558 * 120.00065 * 359.97438 * 16 15 14 18 18 C 1.47800 * 120.00119 * 179.97438 * 16 15 14 19 19 C 1.40931 * 127.23799 * 179.97438 * 18 16 15 20 20 N 1.31127 * 105.77467 * 179.97438 * 19 18 16 21 21 N 1.28513 * 109.06493 * 0.02562 * 20 19 18 22 22 C 1.46493 * 124.44970 * 180.02562 * 21 20 19 23 23 N 1.28592 * 111.11071 * 359.74207 * 21 20 19 24 24 H 1.08995 * 109.47053 * 300.00107 * 1 2 3 25 25 H 1.09001 * 109.46930 * 59.99747 * 1 2 3 26 26 H 1.09000 * 109.46973 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47066 * 174.99977 * 4 2 1 28 28 H 1.08994 * 109.46974 * 55.00124 * 4 2 1 29 29 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 30 30 H 0.96999 * 119.99739 * 180.02562 * 9 8 6 31 31 H 1.09005 * 109.46502 * 184.99774 * 14 2 1 32 32 H 1.08996 * 109.47343 * 304.99842 * 14 2 1 33 33 H 0.97004 * 120.00029 * 359.97438 * 15 14 2 34 34 H 1.08005 * 127.10614 * 359.97438 * 19 18 16 35 35 H 1.09005 * 109.47366 * 89.97301 * 22 21 20 36 36 H 1.08997 * 109.47791 * 209.97289 * 22 21 20 37 37 H 1.09002 * 109.46955 * 329.97520 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0353 2.4423 6 6 1.9967 -0.4236 3.6858 7 1 2.5577 -1.3410 3.7866 8 6 1.6245 0.2903 4.8166 9 7 0.9404 1.4080 4.6937 10 14 2.0946 -0.3353 6.5128 11 1 3.5734 -0.4243 6.6153 12 1 1.5818 0.6007 7.5453 13 1 1.5018 -1.6800 6.7262 14 6 2.0400 -0.7213 -1.2493 15 7 1.6525 0.0354 -2.4424 16 6 1.9964 -0.4129 -3.6659 17 8 2.6286 -1.4450 -3.7795 18 6 1.6050 0.3501 -4.8697 19 6 1.8817 0.0252 -6.2128 20 7 1.3431 0.9822 -6.9293 21 7 0.7823 1.8303 -6.1433 22 6 0.0774 3.0342 -6.5903 23 7 0.9160 1.4804 -4.9131 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1264 -0.7995 1.2056 28 1 1.6054 -1.7198 1.2950 29 1 1.1483 0.8591 2.3518 30 1 0.6807 1.9070 5.4838 31 1 3.1264 -0.7994 -1.2056 32 1 1.6054 -1.7198 -1.2953 33 1 1.1483 0.8592 -2.3518 34 1 2.4251 -0.8344 -6.5765 35 1 -0.9747 2.8000 -6.7528 36 1 0.1636 3.8095 -5.8290 37 1 0.5187 3.3889 -7.5217 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714438479.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:12 Heat of formation + Delta-G solvation = 52.771522 kcal Electronic energy + Delta-G solvation = -19445.053963 eV Core-core repulsion = 16259.391036 eV Total energy + Delta-G solvation = -3185.662927 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.71285 -40.69012 -38.23531 -35.99990 -34.82754 -34.26790 -33.57062 -31.85893 -29.16281 -27.77577 -27.14625 -25.15803 -23.91294 -23.11496 -21.66388 -21.19932 -19.35600 -18.71620 -18.04406 -17.89934 -17.20537 -16.53139 -16.47506 -15.78728 -15.59672 -15.46915 -15.26815 -14.70969 -14.18395 -13.87011 -13.64570 -13.59103 -13.56106 -13.04122 -12.94775 -12.76030 -12.21027 -12.18197 -12.13721 -11.99291 -11.75973 -11.64813 -11.56211 -11.34374 -10.91632 -10.53256 -10.12678 -8.97631 -7.93885 -5.22080 0.18130 0.86539 1.25199 1.48770 1.51639 1.57623 2.02658 2.13456 2.58010 2.86364 3.39814 3.69872 3.74919 3.97401 3.99323 4.09087 4.29773 4.31883 4.36659 4.48824 4.55569 4.67608 4.72299 4.77045 4.92565 4.95443 5.04818 5.14737 5.27352 5.38582 5.47585 5.51577 5.51857 6.28668 6.36597 6.97404 7.07539 7.35556 8.11240 8.35104 9.29530 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.041219 B = 0.002977 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.130212 B = 9402.543389 C = 9926.614037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.095 4.095 3 H 0.077 0.923 4 C 0.157 3.843 5 N -0.742 5.742 6 C -0.247 4.247 7 H 0.075 0.925 8 C -0.075 4.075 9 N -0.969 5.969 10 Si 0.973 3.027 11 H -0.278 1.278 12 H -0.295 1.295 13 H -0.278 1.278 14 C 0.137 3.863 15 N -0.700 5.700 16 C 0.609 3.391 17 O -0.560 6.560 18 C -0.067 4.067 19 C 0.030 3.970 20 N -0.299 5.299 21 N -0.134 5.134 22 C 0.087 3.913 23 N -0.253 5.253 24 H 0.043 0.957 25 H 0.070 0.930 26 H 0.054 0.946 27 H 0.023 0.977 28 H 0.024 0.976 29 H 0.376 0.624 30 H 0.251 0.749 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.414 0.586 34 H 0.224 0.776 35 H 0.113 0.887 36 H 0.122 0.878 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.389 2.922 -24.863 25.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.114 4.114 3 H 0.095 0.905 4 C 0.030 3.970 5 N -0.386 5.386 6 C -0.379 4.379 7 H 0.093 0.907 8 C -0.267 4.267 9 N -0.620 5.620 10 Si 0.802 3.198 11 H -0.205 1.205 12 H -0.221 1.221 13 H -0.204 1.204 14 C 0.013 3.987 15 N -0.351 5.351 16 C 0.393 3.607 17 O -0.437 6.437 18 C -0.228 4.228 19 C -0.152 4.152 20 N -0.139 5.139 21 N -0.039 5.039 22 C -0.050 4.050 23 N -0.104 5.104 24 H 0.062 0.938 25 H 0.089 0.911 26 H 0.073 0.927 27 H 0.041 0.959 28 H 0.042 0.958 29 H 0.209 0.791 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.251 0.749 34 H 0.240 0.760 35 H 0.131 0.869 36 H 0.140 0.860 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.523 3.189 -25.222 25.547 hybrid contribution 0.205 -0.276 1.455 1.495 sum -2.318 2.913 -23.767 24.056 Atomic orbital electron populations 1.21728 0.94033 1.02028 1.01544 1.21341 0.97081 1.00108 0.92893 0.90458 1.20723 0.96702 0.94148 0.85392 1.42517 1.66940 1.27744 1.01358 1.19610 1.27855 1.05377 0.85020 0.90745 1.25547 1.01699 0.97930 1.01531 1.69802 1.45018 1.17976 1.29169 0.85217 0.77886 0.77171 0.79518 1.20460 1.22100 1.20448 1.21285 1.00191 0.95128 0.82098 1.45783 1.56497 1.28036 1.04824 1.16754 0.78775 0.83393 0.81784 1.90801 1.41602 1.24790 1.86542 1.22910 1.06912 0.96508 0.96462 1.25176 1.01352 1.00028 0.88660 1.74028 1.12921 1.02165 1.24831 1.48636 1.36087 1.19700 0.99497 1.22804 0.97832 0.80110 1.04243 1.74350 1.16527 1.13685 1.05803 0.93802 0.91112 0.92686 0.95937 0.95797 0.79131 0.93981 0.91140 0.90837 0.74853 0.75951 0.86906 0.85956 0.85584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.96 8.94 71.98 0.64 -3.31 16 2 C -0.10 -2.87 2.46 -10.79 -0.03 -2.90 16 3 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 4 C 0.16 6.17 5.65 86.38 0.49 6.66 16 5 N -0.74 -37.43 5.33 -343.46 -1.83 -39.26 16 6 C -0.25 -13.84 9.99 84.03 0.84 -13.00 16 7 H 0.07 4.02 7.83 -2.91 -0.02 3.99 16 8 C -0.07 -4.30 5.50 84.86 0.47 -3.84 16 9 N -0.97 -59.09 13.06 21.65 0.28 -58.80 16 10 Si 0.97 46.23 29.55 68.60 2.03 48.26 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 13 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 14 C 0.14 3.64 5.06 86.38 0.44 4.07 16 15 N -0.70 -16.90 5.28 -466.01 -2.46 -19.36 16 16 C 0.61 16.19 7.83 86.77 0.68 16.87 16 17 O -0.56 -18.03 16.95 -3.90 -0.07 -18.09 16 18 C -0.07 -1.54 7.21 42.24 0.30 -1.24 16 19 C 0.03 0.62 12.04 85.46 1.03 1.65 16 20 N -0.30 -5.71 12.00 -56.16 -0.67 -6.38 16 21 N -0.13 -2.22 4.34 -206.55 -0.90 -3.12 16 22 C 0.09 0.46 11.55 127.77 1.48 1.93 16 23 N -0.25 -5.20 11.84 -48.16 -0.57 -5.77 16 24 H 0.04 1.52 7.18 -2.39 -0.02 1.50 16 25 H 0.07 1.65 7.18 -2.39 -0.02 1.64 16 26 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 28 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.38 19.93 6.85 -92.71 -0.63 19.29 16 30 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 31 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 32 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.41 8.79 7.42 -92.71 -0.69 8.10 16 34 H 0.22 3.49 8.06 -2.91 -0.02 3.47 16 35 H 0.11 0.22 8.14 -2.38 -0.02 0.20 16 36 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 37 H 0.13 0.18 8.14 -2.39 -0.02 0.16 16 Total: -1.00 -72.69 322.03 1.92 -70.77 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: -0.23 Total: 24.88 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: 6.34 Total: 6.89 kcal Atomic # 7 Polarization: -126.55 SS G_CDS: -6.15 Total: -132.70 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.07 Total: -18.09 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -72.69 1.92 -70.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714438479.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.542 kcal (2) G-P(sol) polarization free energy of solvation -72.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds