Wall clock time and date at job start Mon Mar 30 2020 00:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46661 * 2 1 4 4 C 1.52992 * 109.47705 * 240.00190 * 2 1 3 5 5 C 1.52997 * 109.47482 * 174.99884 * 4 2 1 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 2 7 7 C 1.34771 * 119.99622 * 179.97438 * 6 5 4 8 8 O 1.21548 * 120.00715 * 0.02562 * 7 6 5 9 9 C 1.47872 * 119.99760 * 179.97438 * 7 6 5 10 10 N 1.34551 * 126.04603 * 0.02932 * 9 7 6 11 11 C 1.30874 * 107.26985 * 179.97438 * 10 9 7 12 12 N 1.34587 * 107.62507 * 0.02562 * 11 10 9 13 13 C 1.46493 * 125.75063 * 179.97438 * 12 11 10 14 14 N 1.28854 * 108.49861 * 359.73336 * 12 11 10 15 15 N 1.46497 * 109.47022 * 119.99544 * 2 1 3 16 16 C 1.36933 * 120.00376 * 275.00368 * 15 2 1 17 17 H 1.07998 * 120.00056 * 0.02562 * 16 15 2 18 18 C 1.38820 * 120.00147 * 180.02562 * 16 15 2 19 19 N 1.31619 * 119.99690 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99941 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47389 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47494 * 120.00297 * 20 18 16 23 23 H 1.48506 * 109.46820 * 239.99804 * 20 18 16 24 24 H 1.09001 * 109.46974 * 60.00366 * 1 2 3 25 25 H 1.09000 * 109.46929 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47812 * 299.99528 * 1 2 3 27 27 H 1.09002 * 109.47103 * 54.99637 * 4 2 1 28 28 H 1.08998 * 109.46862 * 295.00449 * 4 2 1 29 29 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 30 30 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 31 31 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 32 32 H 1.08001 * 126.18987 * 180.02562 * 11 10 9 33 33 H 1.09005 * 109.47162 * 90.00092 * 13 12 11 34 34 H 1.09000 * 109.47179 * 209.99980 * 13 12 11 35 35 H 1.09006 * 109.47200 * 330.00106 * 13 12 11 36 36 H 0.97003 * 119.99849 * 95.00425 * 15 2 1 37 37 H 0.97004 * 120.00058 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 7 4.0534 -1.3042 -2.5094 7 6 5.3742 -1.3396 -2.7749 8 8 6.1602 -0.7985 -2.0221 9 6 5.8673 -2.0376 -3.9817 10 7 5.1096 -2.6744 -4.8931 11 6 5.9184 -3.1570 -5.8019 12 7 7.1731 -2.8190 -5.4515 13 6 8.3899 -3.1594 -6.1929 14 7 7.1234 -2.1413 -4.3567 15 7 2.0183 -0.6905 1.1962 16 6 2.1490 -0.0074 2.3758 17 1 1.8917 1.0404 2.4244 18 6 2.6122 -0.6616 3.5091 19 7 2.9262 -1.9384 3.4497 20 14 2.7898 0.2701 5.1183 21 1 2.3749 1.6822 4.9211 22 1 1.9297 -0.3593 6.1524 23 1 4.2069 0.2282 5.5607 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3635 0.5137 0.8900 27 1 1.6055 -0.2617 -2.1369 28 1 1.7517 -1.7714 -1.2056 29 1 3.9995 -1.0726 -0.4258 30 1 3.8532 0.4372 -1.3572 31 1 3.4261 -1.7357 -3.1104 32 1 5.6310 -3.7239 -6.6750 33 1 8.6074 -2.3725 -6.9152 34 1 9.2241 -3.2552 -5.4978 35 1 8.2437 -4.1037 -6.7174 36 1 2.2490 -1.6317 1.1527 37 1 3.2496 -2.3957 4.2417 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714466651.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:17 Heat of formation + Delta-G solvation = 64.648031 kcal Electronic energy + Delta-G solvation = -19577.132051 eV Core-core repulsion = 16391.984128 eV Total energy + Delta-G solvation = -3185.147923 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.61247 -39.22705 -36.50912 -34.85013 -34.26623 -32.18327 -31.93781 -29.52192 -28.40769 -27.59027 -24.50468 -23.60785 -22.72286 -21.86473 -20.55151 -19.69179 -18.20523 -17.14720 -16.99357 -16.50163 -15.95742 -15.27961 -14.89540 -14.64226 -13.97493 -13.88072 -13.54683 -13.50731 -13.41547 -12.81490 -12.42692 -12.14564 -11.97244 -11.47791 -11.01552 -10.87019 -10.71814 -10.65397 -10.63549 -10.57338 -10.25067 -10.04780 -9.79718 -9.75123 -9.57339 -8.86154 -8.73903 -6.87993 -5.68297 -2.96741 1.28387 1.95489 1.96139 3.15993 3.46703 3.50143 3.55689 3.57897 3.95490 4.11447 4.54969 4.56756 4.67205 4.82016 4.90451 5.37221 5.48474 5.63800 5.75041 5.79313 5.94993 6.08460 6.15537 6.22636 6.25419 6.41535 6.46784 6.53415 6.72965 6.78135 6.93611 7.13325 7.57228 7.79176 7.90641 8.36232 8.50078 9.61480 10.18649 10.53221 11.54467 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.027416 B = 0.003542 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.054403 B = 7904.274152 C = 8587.441807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.050 0.950 4 C -0.132 4.132 5 C 0.123 3.877 6 N -0.706 5.706 7 C 0.608 3.392 8 O -0.515 6.515 9 C 0.149 3.851 10 N -0.485 5.485 11 C 0.188 3.812 12 N -0.308 5.308 13 C 0.086 3.914 14 N -0.254 5.254 15 N -0.724 5.724 16 C -0.236 4.236 17 H 0.071 0.929 18 C -0.014 4.014 19 N -0.932 5.932 20 Si 0.905 3.095 21 H -0.281 1.281 22 H -0.293 1.293 23 H -0.292 1.292 24 H 0.036 0.964 25 H 0.046 0.954 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.406 0.594 32 H 0.226 0.774 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.384 0.616 37 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.638 -3.964 -24.188 25.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.064 3.936 3 H 0.068 0.932 4 C -0.171 4.171 5 C 0.000 4.000 6 N -0.358 5.358 7 C 0.389 3.611 8 O -0.387 6.387 9 C -0.131 4.131 10 N -0.211 5.211 11 C -0.108 4.108 12 N -0.104 5.104 13 C -0.055 4.055 14 N -0.093 5.093 15 N -0.366 5.366 16 C -0.367 4.367 17 H 0.088 0.912 18 C -0.210 4.210 19 N -0.581 5.581 20 Si 0.736 3.264 21 H -0.206 1.206 22 H -0.220 1.220 23 H -0.219 1.219 24 H 0.055 0.945 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.106 0.894 30 H 0.086 0.914 31 H 0.241 0.759 32 H 0.242 0.758 33 H 0.108 0.892 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.217 0.783 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.407 -3.164 -23.090 24.170 hybrid contribution -0.036 -0.397 0.212 0.451 sum 6.371 -3.560 -22.878 24.014 Atomic orbital electron populations 1.22420 0.99113 1.00852 0.99943 1.20153 0.91885 0.95593 0.85973 0.93224 1.22063 0.93619 1.02017 0.99408 1.21557 0.94638 0.97204 0.86556 1.45805 1.06150 1.56214 1.27586 1.16283 0.83090 0.79759 0.82007 1.90865 1.55498 1.44847 1.47499 1.23925 0.86371 1.03788 0.99009 1.71272 1.32558 1.13872 1.03364 1.26483 0.80700 1.02130 1.01443 1.47399 1.09493 1.36656 1.16827 1.22238 0.84018 1.02697 0.96514 1.74377 1.22157 1.12750 1.00011 1.42475 1.78070 1.10696 1.05375 1.19269 1.36246 0.93863 0.87316 0.91151 1.24728 1.02254 0.95969 0.98048 1.69669 1.51036 1.08684 1.28696 0.86147 0.77287 0.78790 0.84162 1.20594 1.22034 1.21918 0.94545 0.93503 0.92745 0.91731 0.91417 0.89371 0.91427 0.75911 0.75775 0.89178 0.88146 0.87999 0.78257 0.93650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 9.49 37.16 0.35 -2.56 16 2 C 0.17 3.42 2.89 -67.94 -0.20 3.22 16 3 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 4 C -0.13 -2.12 4.87 -26.74 -0.13 -2.25 16 5 C 0.12 2.17 5.56 -4.04 -0.02 2.15 16 6 N -0.71 -11.15 5.55 -61.24 -0.34 -11.49 16 7 C 0.61 10.95 7.83 -12.32 -0.10 10.85 16 8 O -0.51 -11.30 17.09 5.32 0.09 -11.21 16 9 C 0.15 2.32 7.96 -156.36 -1.24 1.07 16 10 N -0.49 -6.07 11.09 -12.36 -0.14 -6.21 16 11 C 0.19 1.55 12.62 -90.48 -1.14 0.41 16 12 N -0.31 -2.81 3.72 -69.39 -0.26 -3.07 16 13 C 0.09 0.28 11.38 59.84 0.68 0.96 16 14 N -0.25 -3.67 12.08 32.07 0.39 -3.28 16 15 N -0.72 -18.10 4.57 -53.43 -0.24 -18.34 16 16 C -0.24 -6.61 9.93 -15.06 -0.15 -6.76 16 17 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 18 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 19 N -0.93 -28.77 13.06 55.49 0.72 -28.05 16 20 Si 0.90 23.01 29.55 -169.99 -5.02 17.99 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 23 H -0.29 -7.53 7.11 56.52 0.40 -7.12 16 24 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.09 1.90 7.75 -51.93 -0.40 1.50 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 31 H 0.41 5.41 8.18 -40.82 -0.33 5.07 16 32 H 0.23 0.57 8.06 -52.49 -0.42 0.15 16 33 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 34 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.10 -0.02 8.14 -51.93 -0.42 -0.44 16 36 H 0.38 10.24 7.80 -40.82 -0.32 9.92 16 37 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 325.35 15.07 4.90 4.90 Total: -1.00 -37.41 325.35 -7.19 -44.60 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -5.25 Total: 7.57 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: -2.04 Total: 6.59 kcal Atomic # 7 Polarization: -70.57 SS G_CDS: 0.13 Total: -70.44 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.09 Total: -11.21 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.02 Total: 17.99 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -37.41 -7.19 -44.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714466651.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.245 kcal (2) G-P(sol) polarization free energy of solvation -37.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds