Wall clock time and date at job start Mon Mar 30 2020 00:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46661 * 2 1 4 4 C 1.52992 * 109.47705 * 240.00190 * 2 1 3 5 5 C 1.52997 * 109.47482 * 174.99884 * 4 2 1 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 2 7 7 C 1.34771 * 119.99622 * 179.97438 * 6 5 4 8 8 O 1.21548 * 120.00715 * 0.02562 * 7 6 5 9 9 C 1.47872 * 119.99760 * 179.97438 * 7 6 5 10 10 N 1.34551 * 126.04603 * 0.02932 * 9 7 6 11 11 C 1.30874 * 107.26985 * 179.97438 * 10 9 7 12 12 N 1.34587 * 107.62507 * 0.02562 * 11 10 9 13 13 C 1.46493 * 125.75063 * 179.97438 * 12 11 10 14 14 N 1.28854 * 108.49861 * 359.73336 * 12 11 10 15 15 N 1.46497 * 109.47022 * 119.99544 * 2 1 3 16 16 C 1.36933 * 120.00376 * 275.00368 * 15 2 1 17 17 H 1.07998 * 120.00056 * 0.02562 * 16 15 2 18 18 C 1.38820 * 120.00147 * 180.02562 * 16 15 2 19 19 N 1.31619 * 119.99690 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99941 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47389 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47494 * 120.00297 * 20 18 16 23 23 H 1.48506 * 109.46820 * 239.99804 * 20 18 16 24 24 H 1.09001 * 109.46974 * 60.00366 * 1 2 3 25 25 H 1.09000 * 109.46929 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47812 * 299.99528 * 1 2 3 27 27 H 1.09002 * 109.47103 * 54.99637 * 4 2 1 28 28 H 1.08998 * 109.46862 * 295.00449 * 4 2 1 29 29 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 30 30 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 31 31 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 32 32 H 1.08001 * 126.18987 * 180.02562 * 11 10 9 33 33 H 1.09005 * 109.47162 * 90.00092 * 13 12 11 34 34 H 1.09000 * 109.47179 * 209.99980 * 13 12 11 35 35 H 1.09006 * 109.47200 * 330.00106 * 13 12 11 36 36 H 0.97003 * 119.99849 * 95.00425 * 15 2 1 37 37 H 0.97004 * 120.00058 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 7 4.0534 -1.3042 -2.5094 7 6 5.3742 -1.3396 -2.7749 8 8 6.1602 -0.7985 -2.0221 9 6 5.8673 -2.0376 -3.9817 10 7 5.1096 -2.6744 -4.8931 11 6 5.9184 -3.1570 -5.8019 12 7 7.1731 -2.8190 -5.4515 13 6 8.3899 -3.1594 -6.1929 14 7 7.1234 -2.1413 -4.3567 15 7 2.0183 -0.6905 1.1962 16 6 2.1490 -0.0074 2.3758 17 1 1.8917 1.0404 2.4244 18 6 2.6122 -0.6616 3.5091 19 7 2.9262 -1.9384 3.4497 20 14 2.7898 0.2701 5.1183 21 1 2.3749 1.6822 4.9211 22 1 1.9297 -0.3593 6.1524 23 1 4.2069 0.2282 5.5607 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3635 0.5137 0.8900 27 1 1.6055 -0.2617 -2.1369 28 1 1.7517 -1.7714 -1.2056 29 1 3.9995 -1.0726 -0.4258 30 1 3.8532 0.4372 -1.3572 31 1 3.4261 -1.7357 -3.1104 32 1 5.6310 -3.7239 -6.6750 33 1 8.6074 -2.3725 -6.9152 34 1 9.2241 -3.2552 -5.4978 35 1 8.2437 -4.1037 -6.7174 36 1 2.2490 -1.6317 1.1527 37 1 3.2496 -2.3957 4.2417 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714466651.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:17 Heat of formation + Delta-G solvation = 36.101619 kcal Electronic energy + Delta-G solvation = -19578.369916 eV Core-core repulsion = 16391.984128 eV Total energy + Delta-G solvation = -3186.385788 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.44832 -40.63628 -38.14155 -35.98459 -35.47460 -34.11238 -32.79952 -31.18978 -29.89340 -28.43934 -25.96086 -25.27812 -23.81332 -22.88232 -21.89420 -21.16926 -19.41334 -19.03772 -17.80125 -17.36572 -17.24734 -16.89128 -16.33784 -15.81225 -15.62516 -15.31472 -15.08112 -14.58889 -14.13844 -13.97036 -13.89313 -13.55720 -13.23256 -12.86264 -12.84235 -12.62027 -12.28226 -12.23089 -12.08629 -11.72831 -11.58756 -11.57030 -11.45457 -11.34303 -10.93473 -10.63947 -10.15567 -8.95950 -7.90678 -5.17436 0.27716 1.12070 1.29482 1.46671 1.48501 1.57572 2.06004 2.22474 2.58760 3.08856 3.43681 3.49137 3.88778 3.92956 4.00288 4.22905 4.34924 4.37931 4.42025 4.68538 4.69687 4.76118 4.81543 4.90010 5.03511 5.10931 5.20484 5.30584 5.34936 5.41978 5.56625 5.64363 5.66948 6.32410 6.34583 6.94351 7.09430 7.38171 8.16309 8.37549 9.33257 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.027416 B = 0.003542 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.054403 B = 7904.274152 C = 8587.441807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.165 3.835 3 H 0.045 0.955 4 C -0.116 4.116 5 C 0.133 3.867 6 N -0.689 5.689 7 C 0.603 3.397 8 O -0.570 6.570 9 C 0.119 3.881 10 N -0.507 5.507 11 C 0.209 3.791 12 N -0.301 5.301 13 C 0.074 3.926 14 N -0.288 5.288 15 N -0.736 5.736 16 C -0.230 4.230 17 H 0.075 0.925 18 C -0.081 4.081 19 N -0.971 5.971 20 Si 0.967 3.033 21 H -0.265 1.265 22 H -0.293 1.293 23 H -0.299 1.299 24 H 0.076 0.924 25 H 0.045 0.955 26 H 0.034 0.966 27 H 0.107 0.893 28 H 0.072 0.928 29 H 0.042 0.958 30 H 0.060 0.940 31 H 0.421 0.579 32 H 0.286 0.714 33 H 0.109 0.891 34 H 0.093 0.907 35 H 0.146 0.854 36 H 0.371 0.629 37 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.895 -4.233 -27.350 28.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.056 3.944 3 H 0.063 0.937 4 C -0.154 4.154 5 C 0.009 3.991 6 N -0.341 5.341 7 C 0.386 3.614 8 O -0.446 6.446 9 C -0.160 4.160 10 N -0.233 5.233 11 C -0.086 4.086 12 N -0.096 5.096 13 C -0.065 4.065 14 N -0.130 5.130 15 N -0.377 5.377 16 C -0.362 4.362 17 H 0.093 0.907 18 C -0.272 4.272 19 N -0.623 5.623 20 Si 0.797 3.203 21 H -0.189 1.189 22 H -0.221 1.221 23 H -0.227 1.227 24 H 0.095 0.905 25 H 0.064 0.936 26 H 0.053 0.947 27 H 0.125 0.875 28 H 0.091 0.909 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.258 0.742 32 H 0.301 0.699 33 H 0.127 0.873 34 H 0.111 0.889 35 H 0.164 0.836 36 H 0.203 0.797 37 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 5.620 -3.416 -26.330 27.139 hybrid contribution 0.253 -0.344 0.968 1.058 sum 5.873 -3.759 -25.362 26.303 Atomic orbital electron populations 1.22254 0.96945 1.01099 1.00957 1.20455 0.93267 0.95243 0.85406 0.93656 1.21927 0.91933 1.02303 0.99226 1.21274 0.95790 0.96352 0.85648 1.45591 1.06003 1.55574 1.26932 1.16735 0.83096 0.79113 0.82481 1.90816 1.56787 1.47335 1.49667 1.23332 0.87356 1.05940 0.99343 1.71199 1.33584 1.14647 1.03860 1.27578 0.79585 1.00082 1.01319 1.47838 1.11588 1.34840 1.15347 1.22782 0.81867 1.05539 0.96264 1.74272 1.22119 1.14179 1.02400 1.42688 1.78368 1.10280 1.06368 1.19651 1.34065 0.94118 0.88361 0.90660 1.25509 1.03423 0.96896 1.01416 1.69824 1.53080 1.10243 1.29109 0.85148 0.76523 0.78346 0.80266 1.18932 1.22074 1.22688 0.90519 0.93631 0.94710 0.87501 0.90928 0.93960 0.92185 0.74160 0.69917 0.87308 0.88856 0.83556 0.79666 0.94341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.12 9.49 71.98 0.68 -4.44 16 2 C 0.16 6.32 2.89 44.99 0.13 6.45 16 3 H 0.05 1.78 8.08 -2.39 -0.02 1.76 16 4 C -0.12 -3.53 4.87 30.59 0.15 -3.38 16 5 C 0.13 4.81 5.56 86.38 0.48 5.29 16 6 N -0.69 -22.06 5.55 -465.95 -2.59 -24.64 16 7 C 0.60 22.63 7.83 86.80 0.68 23.30 16 8 O -0.57 -26.66 17.09 -3.87 -0.07 -26.72 16 9 C 0.12 3.71 7.96 137.13 1.09 4.80 16 10 N -0.51 -11.79 11.09 -193.03 -2.14 -13.93 16 11 C 0.21 2.69 12.62 180.30 2.27 4.96 16 12 N -0.30 -4.75 3.72 -373.45 -1.39 -6.14 16 13 C 0.07 0.24 11.38 127.77 1.45 1.69 16 14 N -0.29 -8.27 12.08 -52.44 -0.63 -8.91 16 15 N -0.74 -37.44 4.57 -322.96 -1.48 -38.91 16 16 C -0.23 -13.06 9.93 84.04 0.83 -12.23 16 17 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 18 C -0.08 -4.81 5.50 84.86 0.47 -4.34 16 19 N -0.97 -61.85 13.06 21.65 0.28 -61.57 16 20 Si 0.97 48.26 29.55 68.60 2.03 50.29 16 21 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 22 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 23 H -0.30 -15.15 7.11 99.48 0.71 -14.45 16 24 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.04 1.93 7.75 -2.39 -0.02 1.91 16 30 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.42 10.84 8.18 -92.71 -0.76 10.08 16 32 H 0.29 -0.30 8.06 -2.91 -0.02 -0.32 16 33 H 0.11 0.01 8.14 -2.38 -0.02 -0.01 16 34 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.15 -0.80 8.14 -2.38 -0.02 -0.82 16 36 H 0.37 20.48 7.80 -92.71 -0.72 19.76 16 37 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -87.15 325.35 1.87 -85.28 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: -0.39 Total: 23.15 kcal Atomic # 6 Polarization: 13.87 SS G_CDS: 8.24 Total: 22.11 kcal Atomic # 7 Polarization: -146.16 SS G_CDS: -7.95 Total: -154.11 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.07 Total: -26.72 kcal Atomic # 14 Polarization: 48.26 SS G_CDS: 2.03 Total: 50.29 kcal Total: -87.15 1.87 -85.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714466651.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.379 kcal (2) G-P(sol) polarization free energy of solvation -87.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds