Wall clock time and date at job start Mon Mar 30 2020 00:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.47273 * 2 1 4 4 C 1.52996 * 109.47432 * 239.99781 * 2 1 3 5 5 C 1.53005 * 109.47292 * 174.99873 * 4 2 1 6 6 N 1.46501 * 109.47194 * 180.02562 * 5 4 2 7 7 C 1.34771 * 120.00164 * 179.97438 * 6 5 4 8 8 O 1.21567 * 119.99646 * 0.02562 * 7 6 5 9 9 C 1.47801 * 120.00503 * 179.97438 * 7 6 5 10 10 C 1.40917 * 127.23902 * 179.97438 * 9 7 6 11 11 N 1.31134 * 105.77592 * 180.02562 * 10 9 7 12 12 N 1.28522 * 109.05970 * 0.02562 * 11 10 9 13 13 C 1.46494 * 124.44367 * 179.97438 * 12 11 10 14 14 N 1.28590 * 111.10996 * 359.97438 * 12 11 10 15 15 N 1.46498 * 109.47238 * 119.99677 * 2 1 3 16 16 C 1.36935 * 120.00068 * 275.00332 * 15 2 1 17 17 H 1.07997 * 120.00000 * 0.02562 * 16 15 2 18 18 C 1.38813 * 119.99940 * 179.97438 * 16 15 2 19 19 N 1.31617 * 119.99985 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00110 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.46815 * 90.00016 * 20 18 16 22 22 H 1.48503 * 109.47347 * 209.99707 * 20 18 16 23 23 H 1.48493 * 109.47050 * 330.00215 * 20 18 16 24 24 H 1.08992 * 109.47595 * 300.00268 * 1 2 3 25 25 H 1.09008 * 109.46994 * 60.00554 * 1 2 3 26 26 H 1.09003 * 109.47273 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47339 * 55.00348 * 4 2 1 28 28 H 1.08995 * 109.47349 * 295.00217 * 4 2 1 29 29 H 1.09003 * 109.47041 * 60.00007 * 5 4 2 30 30 H 1.09003 * 109.47048 * 300.00156 * 5 4 2 31 31 H 0.97004 * 120.00131 * 359.97438 * 6 5 4 32 32 H 1.08000 * 127.11256 * 359.97438 * 10 9 7 33 33 H 1.08999 * 109.47237 * 90.02176 * 13 12 11 34 34 H 1.09008 * 109.46681 * 210.02557 * 13 12 11 35 35 H 1.09005 * 109.47420 * 330.02117 * 13 12 11 36 36 H 0.96998 * 120.00161 * 95.00318 * 15 2 1 37 37 H 0.97002 * 119.99957 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 7 4.0532 -1.3034 -2.5100 7 6 5.3740 -1.3386 -2.7758 8 8 6.1601 -0.7981 -2.0224 9 6 5.8668 -2.0353 -3.9826 10 6 7.2046 -2.1654 -4.4056 11 7 7.1609 -2.8565 -5.5191 12 7 5.9370 -3.1416 -5.7883 13 6 5.5027 -3.9060 -6.9602 14 7 5.1436 -2.6678 -4.8941 15 7 2.0183 -0.6905 1.1962 16 6 2.1490 -0.0074 2.3757 17 1 1.8917 1.0404 2.4243 18 6 2.6112 -0.6618 3.5093 19 7 2.7374 -0.0051 4.6429 20 14 3.0556 -2.4743 3.4255 21 1 4.4885 -2.6162 3.0622 22 1 2.8156 -3.1045 4.7485 23 1 2.2162 -3.1427 2.3990 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6055 -0.2618 -2.1369 28 1 1.7516 -1.7715 -1.2055 29 1 3.9995 -1.0727 -0.4258 30 1 3.8532 0.4370 -1.3573 31 1 3.4259 -1.7350 -3.1110 32 1 8.0841 -1.7756 -3.9146 33 1 5.4796 -4.9674 -6.7134 34 1 4.5059 -3.5802 -7.2575 35 1 6.1995 -3.7390 -7.7816 36 1 2.2490 -1.6317 1.1527 37 1 3.0600 -0.4625 5.4351 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714494228.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:07 Heat of formation + Delta-G solvation = 83.898266 kcal Electronic energy + Delta-G solvation = -19696.547411 eV Core-core repulsion = 16512.234240 eV Total energy + Delta-G solvation = -3184.313170 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.90714 -39.43592 -36.76069 -34.54320 -34.11488 -32.96938 -32.16595 -29.88152 -28.76130 -27.93922 -24.70389 -23.41373 -22.37918 -22.25466 -20.64018 -19.84447 -18.10210 -17.55741 -17.29464 -16.99438 -15.73718 -15.51114 -15.04581 -14.77418 -14.07267 -14.00634 -13.69933 -13.37628 -13.35638 -12.92503 -12.51252 -12.25556 -12.12929 -11.93332 -11.31439 -11.23316 -11.02176 -10.78509 -10.71813 -10.63757 -10.44726 -10.16673 -9.92672 -9.71504 -9.54250 -8.97525 -8.88066 -7.23828 -5.72555 -3.08087 1.08850 1.71633 1.84692 3.09235 3.22012 3.41355 3.44835 3.49907 3.67761 4.50195 4.52772 4.63645 4.69584 4.79556 4.91472 5.16159 5.20790 5.39870 5.49360 5.61503 5.64396 5.72295 5.97709 6.08330 6.19404 6.24618 6.26786 6.36213 6.49383 6.55135 6.79986 6.99412 7.45694 7.84646 8.03516 8.16748 8.46465 9.24743 9.97349 10.16445 11.45959 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.024533 B = 0.003927 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.044749 B = 7128.714697 C = 7627.927603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.180 3.820 3 H 0.059 0.941 4 C -0.136 4.136 5 C 0.120 3.880 6 N -0.713 5.713 7 C 0.602 3.398 8 O -0.521 6.521 9 C -0.041 4.041 10 C 0.036 3.964 11 N -0.293 5.293 12 N -0.147 5.147 13 C 0.104 3.896 14 N -0.253 5.253 15 N -0.748 5.748 16 C -0.241 4.241 17 H 0.091 0.909 18 C 0.005 3.995 19 N -0.934 5.934 20 Si 0.881 3.119 21 H -0.283 1.283 22 H -0.292 1.292 23 H -0.278 1.278 24 H 0.059 0.941 25 H 0.039 0.961 26 H 0.044 0.956 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.403 0.597 32 H 0.209 0.791 33 H 0.093 0.907 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.360 0.640 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.923 -7.364 -25.291 26.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.070 3.930 3 H 0.077 0.923 4 C -0.175 4.175 5 C -0.003 4.003 6 N -0.364 5.364 7 C 0.384 3.616 8 O -0.395 6.395 9 C -0.204 4.204 10 C -0.148 4.148 11 N -0.132 5.132 12 N -0.049 5.049 13 C -0.035 4.035 14 N -0.101 5.101 15 N -0.392 5.392 16 C -0.371 4.371 17 H 0.108 0.892 18 C -0.190 4.190 19 N -0.582 5.582 20 Si 0.712 3.288 21 H -0.209 1.209 22 H -0.218 1.218 23 H -0.204 1.204 24 H 0.078 0.922 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.238 0.762 32 H 0.226 0.774 33 H 0.112 0.888 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.193 0.807 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.086 -7.488 -25.627 26.876 hybrid contribution 0.251 -1.188 0.479 1.306 sum 3.337 -8.676 -25.148 26.811 Atomic orbital electron populations 1.22393 0.98621 1.00851 1.00523 1.20122 0.92058 0.95908 0.84913 0.92268 1.22116 0.93773 1.01850 0.99767 1.21555 0.94533 0.97673 0.86519 1.45964 1.06624 1.56300 1.27514 1.16635 0.82860 0.79550 0.82507 1.90868 1.55509 1.45368 1.47729 1.23200 0.92765 1.05745 0.98695 1.24887 0.98415 0.98961 0.92521 1.74023 1.04426 1.17066 1.17731 1.48035 1.00697 1.37280 1.18919 1.22243 1.03016 0.95556 0.82712 1.74357 1.24173 1.11545 1.00068 1.42837 1.79778 1.09327 1.07253 1.19060 1.36860 0.95515 0.85694 0.89150 1.24650 1.01428 0.97363 0.95587 1.69696 1.52721 1.35531 1.00278 0.86600 0.78619 0.86917 0.76703 1.20948 1.21825 1.20444 0.92223 0.94215 0.93655 0.91289 0.91646 0.89930 0.90898 0.76245 0.77387 0.88849 0.87582 0.87590 0.80703 0.93101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 9.49 37.15 0.35 -2.38 16 2 C 0.18 3.27 2.89 -67.94 -0.20 3.07 16 3 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 4 C -0.14 -1.94 4.87 -26.73 -0.13 -2.07 16 5 C 0.12 1.87 5.56 -4.04 -0.02 1.85 16 6 N -0.71 -9.69 5.55 -61.26 -0.34 -10.03 16 7 C 0.60 9.15 7.83 -12.35 -0.10 9.06 16 8 O -0.52 -9.74 16.95 5.31 0.09 -9.65 16 9 C -0.04 -0.53 7.21 -82.68 -0.60 -1.13 16 10 C 0.04 0.42 12.04 -16.84 -0.20 0.21 16 11 N -0.29 -3.22 12.01 30.89 0.37 -2.85 16 12 N -0.15 -1.41 4.35 -16.63 -0.07 -1.48 16 13 C 0.10 0.41 11.55 59.84 0.69 1.10 16 14 N -0.25 -2.88 11.84 33.42 0.40 -2.48 16 15 N -0.75 -17.26 4.38 -53.43 -0.23 -17.50 16 16 C -0.24 -6.75 10.41 -15.06 -0.16 -6.91 16 17 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 18 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 19 N -0.93 -29.64 13.97 55.49 0.78 -28.87 16 20 Si 0.88 22.48 27.74 -169.99 -4.71 17.76 16 21 H -0.28 -7.28 7.11 56.52 0.40 -6.87 16 22 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 23 H -0.28 -6.65 6.52 56.52 0.37 -6.28 16 24 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 25 H 0.04 0.54 8.14 -51.92 -0.42 0.12 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.08 1.56 7.75 -51.93 -0.40 1.15 16 30 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.40 4.48 8.24 -40.82 -0.34 4.15 16 32 H 0.21 1.99 8.06 -52.49 -0.42 1.57 16 33 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.11 0.24 8.14 -51.92 -0.42 -0.18 16 35 H 0.11 0.24 8.14 -51.93 -0.42 -0.19 16 36 H 0.36 8.26 5.66 -40.82 -0.23 8.03 16 37 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 LS Contribution 322.30 15.07 4.86 4.86 Total: -1.00 -35.54 322.30 -4.53 -40.07 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -5.21 Total: 7.29 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -0.45 Total: 2.87 kcal Atomic # 7 Polarization: -64.10 SS G_CDS: 0.90 Total: -63.21 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.09 Total: -9.65 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.71 Total: 17.76 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -35.54 -4.53 -40.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714494228.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.969 kcal (2) G-P(sol) polarization free energy of solvation -35.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds