Wall clock time and date at job start Mon Mar 30 2020 00:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.47273 * 2 1 4 4 C 1.52996 * 109.47432 * 239.99781 * 2 1 3 5 5 C 1.53005 * 109.47292 * 174.99873 * 4 2 1 6 6 N 1.46501 * 109.47194 * 180.02562 * 5 4 2 7 7 C 1.34771 * 120.00164 * 179.97438 * 6 5 4 8 8 O 1.21567 * 119.99646 * 0.02562 * 7 6 5 9 9 C 1.47801 * 120.00503 * 179.97438 * 7 6 5 10 10 C 1.40917 * 127.23902 * 179.97438 * 9 7 6 11 11 N 1.31134 * 105.77592 * 180.02562 * 10 9 7 12 12 N 1.28522 * 109.05970 * 0.02562 * 11 10 9 13 13 C 1.46494 * 124.44367 * 179.97438 * 12 11 10 14 14 N 1.28590 * 111.10996 * 359.97438 * 12 11 10 15 15 N 1.46498 * 109.47238 * 119.99677 * 2 1 3 16 16 C 1.36935 * 120.00068 * 275.00332 * 15 2 1 17 17 H 1.07997 * 120.00000 * 0.02562 * 16 15 2 18 18 C 1.38813 * 119.99940 * 179.97438 * 16 15 2 19 19 N 1.31617 * 119.99985 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00110 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.46815 * 90.00016 * 20 18 16 22 22 H 1.48503 * 109.47347 * 209.99707 * 20 18 16 23 23 H 1.48493 * 109.47050 * 330.00215 * 20 18 16 24 24 H 1.08992 * 109.47595 * 300.00268 * 1 2 3 25 25 H 1.09008 * 109.46994 * 60.00554 * 1 2 3 26 26 H 1.09003 * 109.47273 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47339 * 55.00348 * 4 2 1 28 28 H 1.08995 * 109.47349 * 295.00217 * 4 2 1 29 29 H 1.09003 * 109.47041 * 60.00007 * 5 4 2 30 30 H 1.09003 * 109.47048 * 300.00156 * 5 4 2 31 31 H 0.97004 * 120.00131 * 359.97438 * 6 5 4 32 32 H 1.08000 * 127.11256 * 359.97438 * 10 9 7 33 33 H 1.08999 * 109.47237 * 90.02176 * 13 12 11 34 34 H 1.09008 * 109.46681 * 210.02557 * 13 12 11 35 35 H 1.09005 * 109.47420 * 330.02117 * 13 12 11 36 36 H 0.96998 * 120.00161 * 95.00318 * 15 2 1 37 37 H 0.97002 * 119.99957 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 7 4.0532 -1.3034 -2.5100 7 6 5.3740 -1.3386 -2.7758 8 8 6.1601 -0.7981 -2.0224 9 6 5.8668 -2.0353 -3.9826 10 6 7.2046 -2.1654 -4.4056 11 7 7.1609 -2.8565 -5.5191 12 7 5.9370 -3.1416 -5.7883 13 6 5.5027 -3.9060 -6.9602 14 7 5.1436 -2.6678 -4.8941 15 7 2.0183 -0.6905 1.1962 16 6 2.1490 -0.0074 2.3757 17 1 1.8917 1.0404 2.4243 18 6 2.6112 -0.6618 3.5093 19 7 2.7374 -0.0051 4.6429 20 14 3.0556 -2.4743 3.4255 21 1 4.4885 -2.6162 3.0622 22 1 2.8156 -3.1045 4.7485 23 1 2.2162 -3.1427 2.3990 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6055 -0.2618 -2.1369 28 1 1.7516 -1.7715 -1.2055 29 1 3.9995 -1.0727 -0.4258 30 1 3.8532 0.4370 -1.3573 31 1 3.4259 -1.7350 -3.1110 32 1 8.0841 -1.7756 -3.9146 33 1 5.4796 -4.9674 -6.7134 34 1 4.5059 -3.5802 -7.2575 35 1 6.1995 -3.7390 -7.7816 36 1 2.2490 -1.6317 1.1527 37 1 3.0600 -0.4625 5.4351 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714494228.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:07 Heat of formation + Delta-G solvation = 55.316693 kcal Electronic energy + Delta-G solvation = -19697.786801 eV Core-core repulsion = 16512.234240 eV Total energy + Delta-G solvation = -3185.552560 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.73360 -40.64583 -38.27929 -35.96723 -34.82947 -34.25136 -33.71319 -31.63723 -29.98012 -28.74641 -25.90808 -25.17703 -23.55653 -23.12789 -21.88819 -21.27827 -19.69687 -18.91018 -18.06457 -17.93025 -17.06924 -16.88479 -16.31584 -15.84027 -15.77756 -15.26498 -15.13898 -14.61428 -14.31424 -13.83828 -13.72969 -13.65005 -13.57916 -13.07475 -12.91382 -12.61531 -12.27402 -12.20398 -12.16689 -12.06093 -11.76262 -11.69893 -11.57497 -11.31171 -10.97169 -10.55597 -10.14558 -9.27758 -7.99467 -5.31005 0.15716 0.83130 1.23866 1.36251 1.41508 1.46718 2.01875 2.11244 2.50031 2.83410 3.33050 3.64466 3.71862 3.93953 3.98493 4.18246 4.28310 4.30767 4.31903 4.45868 4.66185 4.66887 4.75782 4.83857 4.90165 5.01482 5.08519 5.15580 5.34449 5.38266 5.50625 5.60341 5.82883 6.25427 6.37826 6.97945 7.07086 7.12479 7.89722 8.06873 9.22673 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.024533 B = 0.003927 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.044749 B = 7128.714697 C = 7627.927603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.169 3.831 3 H 0.046 0.954 4 C -0.119 4.119 5 C 0.125 3.875 6 N -0.698 5.698 7 C 0.602 3.398 8 O -0.566 6.566 9 C -0.065 4.065 10 C 0.027 3.973 11 N -0.297 5.297 12 N -0.133 5.133 13 C 0.087 3.913 14 N -0.247 5.247 15 N -0.751 5.751 16 C -0.220 4.220 17 H 0.058 0.942 18 C -0.067 4.067 19 N -0.987 5.987 20 Si 0.948 3.052 21 H -0.287 1.287 22 H -0.297 1.297 23 H -0.248 1.248 24 H 0.029 0.971 25 H 0.077 0.923 26 H 0.053 0.947 27 H 0.108 0.892 28 H 0.080 0.920 29 H 0.047 0.953 30 H 0.061 0.939 31 H 0.418 0.582 32 H 0.219 0.781 33 H 0.112 0.888 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.363 0.637 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.991 -9.476 -28.794 30.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.061 3.939 3 H 0.064 0.936 4 C -0.158 4.158 5 C 0.002 3.998 6 N -0.350 5.350 7 C 0.386 3.614 8 O -0.443 6.443 9 C -0.226 4.226 10 C -0.155 4.155 11 N -0.138 5.138 12 N -0.038 5.038 13 C -0.050 4.050 14 N -0.098 5.098 15 N -0.396 5.396 16 C -0.351 4.351 17 H 0.076 0.924 18 C -0.258 4.258 19 N -0.638 5.638 20 Si 0.777 3.223 21 H -0.214 1.214 22 H -0.224 1.224 23 H -0.173 1.173 24 H 0.048 0.952 25 H 0.096 0.904 26 H 0.072 0.928 27 H 0.127 0.873 28 H 0.099 0.901 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.256 0.744 32 H 0.236 0.764 33 H 0.131 0.869 34 H 0.145 0.855 35 H 0.144 0.856 36 H 0.197 0.803 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.102 -9.619 -29.223 30.837 hybrid contribution 0.501 -0.482 1.379 1.544 sum 2.603 -10.101 -27.845 29.734 Atomic orbital electron populations 1.22249 0.96721 1.01520 1.00983 1.20423 0.93304 0.95423 0.84780 0.93620 1.21970 0.92275 1.02569 0.98938 1.21324 0.95593 0.96817 0.86060 1.45751 1.06543 1.55760 1.26920 1.16912 0.82832 0.78926 0.82710 1.90839 1.56610 1.47396 1.49465 1.22826 0.93465 1.07494 0.98853 1.25130 0.98537 0.99042 0.92796 1.74042 1.05148 1.17172 1.17443 1.48681 1.00175 1.35850 1.19089 1.22835 1.04648 0.96069 0.81441 1.74305 1.24185 1.11258 1.00039 1.42873 1.80028 1.09458 1.07195 1.19038 1.34271 0.94378 0.87422 0.92406 1.25438 1.02779 1.02187 0.95357 1.69877 1.55193 1.37567 1.01193 0.85499 0.78290 0.81494 0.77060 1.21372 1.22391 1.17254 0.95185 0.90381 0.92829 0.87328 0.90134 0.93421 0.92063 0.74446 0.76418 0.86950 0.85544 0.85624 0.80338 0.93560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.77 9.49 71.98 0.68 -4.09 16 2 C 0.17 5.86 2.89 44.99 0.13 5.99 16 3 H 0.05 1.71 8.08 -2.39 -0.02 1.70 16 4 C -0.12 -3.01 4.87 30.59 0.15 -2.86 16 5 C 0.13 3.79 5.56 86.38 0.48 4.27 16 6 N -0.70 -17.83 5.55 -465.99 -2.59 -20.42 16 7 C 0.60 18.01 7.83 86.77 0.68 18.69 16 8 O -0.57 -21.61 16.95 -3.93 -0.07 -21.68 16 9 C -0.07 -1.62 7.21 42.24 0.30 -1.32 16 10 C 0.03 0.61 12.04 85.45 1.03 1.64 16 11 N -0.30 -5.96 12.01 -56.17 -0.67 -6.63 16 12 N -0.13 -2.19 4.35 -206.54 -0.90 -3.08 16 13 C 0.09 0.37 11.55 127.77 1.48 1.85 16 14 N -0.25 -5.03 11.84 -48.17 -0.57 -5.60 16 15 N -0.75 -34.16 4.38 -322.96 -1.41 -35.57 16 16 C -0.22 -12.56 10.41 84.03 0.87 -11.68 16 17 H 0.06 3.62 8.06 -2.91 -0.02 3.59 16 18 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 19 N -0.99 -64.82 13.97 21.65 0.30 -64.52 16 20 Si 0.95 46.91 27.74 68.60 1.90 48.81 16 21 H -0.29 -14.28 7.11 99.48 0.71 -13.58 16 22 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 23 H -0.25 -10.89 6.52 99.48 0.65 -10.24 16 24 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 26 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.05 1.79 7.75 -2.39 -0.02 1.77 16 30 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.42 8.07 8.24 -92.71 -0.76 7.31 16 32 H 0.22 4.12 8.06 -2.91 -0.02 4.10 16 33 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 34 H 0.13 0.07 8.14 -2.38 -0.02 0.05 16 35 H 0.13 0.09 8.14 -2.38 -0.02 0.07 16 36 H 0.36 16.02 5.66 -92.71 -0.52 15.50 16 37 H 0.26 16.06 8.31 -92.71 -0.77 15.29 16 Total: -1.00 -80.03 322.30 2.01 -78.02 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: -0.26 Total: 21.70 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: 6.27 Total: 8.95 kcal Atomic # 7 Polarization: -129.98 SS G_CDS: -5.84 Total: -135.82 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.07 Total: -21.68 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 1.90 Total: 48.81 kcal Total: -80.03 2.01 -78.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714494228.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.336 kcal (2) G-P(sol) polarization free energy of solvation -80.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds