Wall clock time and date at job start Mon Mar 30 2020 00:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36936 * 119.99885 * 2 1 4 4 H 1.08005 * 119.99957 * 202.35092 * 3 2 1 5 5 C 1.38814 * 120.00049 * 22.34585 * 3 2 1 6 6 N 1.31617 * 119.99837 * 11.35009 * 5 3 2 7 7 Si 1.86796 * 119.99916 * 191.34390 * 5 3 2 8 8 H 1.48493 * 109.47242 * 60.00884 * 7 5 3 9 9 H 1.48509 * 109.46742 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47300 * 300.00194 * 7 5 3 11 11 C 1.46497 * 120.00096 * 180.02562 * 2 1 3 12 12 C 1.53007 * 109.46627 * 269.99593 * 11 2 1 13 13 N 1.46507 * 109.46793 * 180.02562 * 12 11 2 14 14 C 1.34772 * 119.99523 * 180.02562 * 13 12 11 15 15 O 1.21279 * 120.00719 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99836 * 179.97438 * 14 13 12 17 17 C 1.52998 * 109.47231 * 179.97438 * 16 14 13 18 18 N 1.46507 * 109.47272 * 180.02562 * 17 16 14 19 19 C 1.34421 * 126.82392 * 124.99782 * 18 17 16 20 20 N 1.30835 * 108.07576 * 179.97438 * 19 18 17 21 21 C 1.33243 * 109.82986 * 359.97438 * 20 19 18 22 22 N 1.30714 * 108.94378 * 359.75539 * 21 20 19 23 23 H 1.09002 * 109.46407 * 274.20635 * 1 2 3 24 24 H 1.08999 * 109.47279 * 34.20588 * 1 2 3 25 25 H 1.09001 * 109.47117 * 154.20980 * 1 2 3 26 26 H 0.97002 * 119.99942 * 179.97438 * 6 5 3 27 27 H 1.09002 * 109.47370 * 149.99579 * 11 2 1 28 28 H 1.09003 * 109.47399 * 29.99159 * 11 2 1 29 29 H 1.08996 * 109.47598 * 59.99630 * 12 11 2 30 30 H 1.08999 * 109.47136 * 299.99454 * 12 11 2 31 31 H 0.96999 * 120.00270 * 359.97438 * 13 12 11 32 32 H 1.09003 * 109.47141 * 299.99700 * 16 14 13 33 33 H 1.09002 * 109.47148 * 59.99827 * 16 14 13 34 34 H 1.08999 * 109.47210 * 299.99554 * 17 16 14 35 35 H 1.08999 * 109.47292 * 60.00416 * 17 16 14 36 36 H 1.08000 * 125.96662 * 0.02562 * 19 18 17 37 37 H 1.07999 * 125.52720 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2211 -0.3557 5 6 1.5338 2.3429 0.4571 6 7 0.3842 2.2690 1.0937 7 14 2.3367 4.0047 0.1687 8 1 2.4914 4.2333 -1.2903 9 1 1.4849 5.0734 0.7500 10 1 3.6720 4.0287 0.8180 11 6 2.1975 -1.2687 -0.0006 12 6 2.4526 -1.7109 1.4418 13 7 3.1857 -2.9793 1.4413 14 6 3.5223 -3.5635 2.6083 15 8 3.2188 -3.0390 3.6588 16 6 4.2758 -4.8685 2.6078 17 6 4.5310 -5.3107 4.0501 18 7 5.2641 -6.5791 4.0497 19 6 6.4304 -6.8358 4.6668 20 7 6.7519 -8.0809 4.4256 21 6 5.8192 -8.6487 3.6621 22 7 4.8846 -7.7704 3.4100 23 1 -0.3632 0.0754 1.0250 24 1 -0.3634 0.8499 -0.5777 25 1 -0.3633 -0.9253 -0.4471 26 1 -0.0460 3.0775 1.4134 27 1 3.1500 -1.1382 -0.5144 28 1 1.6084 -2.0282 -0.5146 29 1 1.5003 -1.8413 1.9557 30 1 3.0417 -0.9514 1.9559 31 1 3.4281 -3.3991 0.6011 32 1 3.6869 -5.6280 2.0935 33 1 5.2284 -4.7379 2.0943 34 1 5.1201 -4.5512 4.5642 35 1 3.5787 -5.4413 4.5640 36 1 7.0020 -6.1366 5.2591 37 1 5.8312 -9.6704 3.3122 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714537089.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:02 Heat of formation + Delta-G solvation = 53.711740 kcal Electronic energy + Delta-G solvation = -19347.458088 eV Core-core repulsion = 16161.835931 eV Total energy + Delta-G solvation = -3185.622156 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.98042 -40.79417 -37.90231 -35.95787 -35.62457 -33.32555 -32.17545 -31.74723 -29.66133 -27.93711 -26.23259 -24.64484 -22.90205 -22.55054 -22.36215 -21.25325 -18.88104 -18.62867 -17.55974 -17.17807 -16.96222 -16.69846 -16.37578 -15.80340 -15.65561 -15.29270 -15.01259 -14.73765 -14.66333 -14.08614 -14.01961 -13.56887 -13.14539 -13.00031 -12.77033 -12.64675 -12.50356 -12.27139 -12.11732 -12.01591 -11.78388 -11.16466 -10.96190 -10.78109 -10.67195 -10.64042 -10.09155 -8.87434 -7.85695 -5.35421 0.69765 1.29820 1.46901 1.48805 1.55502 1.58447 2.02946 2.21892 2.52198 3.29865 3.47182 3.55297 3.61267 3.77504 3.91841 4.14148 4.20566 4.24883 4.32518 4.38792 4.65868 4.67717 4.77791 4.83589 5.06267 5.15369 5.28649 5.31581 5.45515 5.49811 5.61955 5.71269 5.88073 6.30118 6.54888 7.11671 7.13328 7.24185 7.82682 8.25085 9.17921 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.042291 B = 0.002875 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.914351 B = 9735.239351 C = 9987.653032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.616 5.616 3 C -0.267 4.267 4 H 0.077 0.923 5 C -0.055 4.055 6 N -0.940 5.940 7 Si 0.971 3.029 8 H -0.274 1.274 9 H -0.297 1.297 10 H -0.276 1.276 11 C 0.145 3.855 12 C 0.115 3.885 13 N -0.709 5.709 14 C 0.512 3.488 15 O -0.589 6.589 16 C -0.133 4.133 17 C 0.147 3.853 18 N -0.383 5.383 19 C 0.262 3.738 20 N -0.579 5.579 21 C 0.193 3.807 22 N -0.351 5.351 23 H -0.001 1.001 24 H 0.021 0.979 25 H 0.035 0.965 26 H 0.248 0.752 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.034 0.966 30 H 0.033 0.967 31 H 0.417 0.583 32 H 0.114 0.886 33 H 0.121 0.879 34 H 0.128 0.872 35 H 0.086 0.914 36 H 0.256 0.744 37 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.160 -18.596 1.914 21.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.339 5.339 3 C -0.397 4.397 4 H 0.095 0.905 5 C -0.250 4.250 6 N -0.586 5.586 7 Si 0.799 3.201 8 H -0.200 1.200 9 H -0.223 1.223 10 H -0.202 1.202 11 C 0.018 3.982 12 C -0.012 4.012 13 N -0.362 5.362 14 C 0.299 3.701 15 O -0.470 6.470 16 C -0.174 4.174 17 C 0.025 3.975 18 N -0.173 5.173 19 C -0.034 4.034 20 N -0.306 5.306 21 C -0.109 4.109 22 N -0.179 5.179 23 H 0.017 0.983 24 H 0.040 0.960 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.254 0.746 32 H 0.133 0.867 33 H 0.139 0.861 34 H 0.146 0.854 35 H 0.105 0.895 36 H 0.272 0.728 37 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 10.422 -18.307 2.361 21.198 hybrid contribution -0.003 1.263 -0.012 1.263 sum 10.419 -17.044 2.348 20.114 Atomic orbital electron populations 1.20608 0.82500 0.96450 0.97516 1.44172 1.02347 1.01672 1.85691 1.19561 0.98394 0.86398 1.35374 0.90543 1.25872 0.98424 1.02187 0.98546 1.70239 1.19285 1.27665 1.41423 0.85282 0.77574 0.79218 0.78005 1.20018 1.22284 1.20178 1.21145 0.97123 0.87500 0.92395 1.21924 0.94298 0.83876 1.01114 1.45909 1.57279 1.23750 1.09241 1.20941 0.79078 0.86670 0.83394 1.90733 1.56777 1.66759 1.32757 1.21738 1.03032 0.93962 0.98633 1.21566 0.98514 0.80041 0.97387 1.50647 1.18369 1.10183 1.38112 1.26903 0.86459 0.94790 0.95292 1.70596 1.30927 1.07565 1.21560 1.26597 0.87613 1.01565 0.95165 1.77992 1.25174 0.92861 1.21853 0.98253 0.95993 0.94640 0.94265 0.91661 0.90872 0.94789 0.94865 0.74560 0.86734 0.86123 0.85421 0.89526 0.72810 0.74306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.50 9.01 127.77 1.15 9.65 16 2 N -0.62 -29.94 2.93 -726.91 -2.13 -32.07 16 3 C -0.27 -14.33 9.67 84.03 0.81 -13.52 16 4 H 0.08 3.90 7.84 -2.91 -0.02 3.88 16 5 C -0.06 -3.08 5.13 84.86 0.44 -2.64 16 6 N -0.94 -55.86 10.58 21.65 0.23 -55.63 16 7 Si 0.97 44.68 29.57 68.60 2.03 46.71 16 8 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 9 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 10 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 11 C 0.15 5.26 5.82 86.38 0.50 5.77 16 12 C 0.12 4.21 6.00 86.38 0.52 4.73 16 13 N -0.71 -18.11 5.56 -463.05 -2.57 -20.68 16 14 C 0.51 13.19 7.83 87.66 0.69 13.87 16 15 O -0.59 -20.90 15.98 -3.03 -0.05 -20.95 16 16 C -0.13 -2.13 5.92 29.85 0.18 -1.95 16 17 C 0.15 2.33 5.84 86.38 0.50 2.84 16 18 N -0.38 -6.47 3.69 -352.05 -1.30 -7.77 16 19 C 0.26 3.75 12.63 180.36 2.28 6.03 16 20 N -0.58 -10.87 11.19 -204.00 -2.28 -13.15 16 21 C 0.19 3.39 13.03 180.76 2.36 5.75 16 22 N -0.35 -7.09 12.58 -61.24 -0.77 -7.86 16 23 H 0.00 -0.05 7.42 -2.39 -0.02 -0.07 16 24 H 0.02 1.14 7.19 -2.39 -0.02 1.13 16 25 H 0.04 1.43 7.84 -2.39 -0.02 1.41 16 26 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 27 H 0.07 2.17 8.03 -2.39 -0.02 2.15 16 28 H 0.07 2.23 7.86 -2.39 -0.02 2.21 16 29 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.42 7.30 8.47 -92.71 -0.79 6.51 16 32 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.13 1.62 8.04 -2.39 -0.02 1.60 16 35 H 0.09 1.63 8.10 -2.39 -0.02 1.61 16 36 H 0.26 1.27 8.06 -2.91 -0.02 1.24 16 37 H 0.24 2.45 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -76.10 322.07 2.87 -73.23 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: 0.29 Total: 7.64 kcal Atomic # 6 Polarization: 21.11 SS G_CDS: 9.42 Total: 30.53 kcal Atomic # 7 Polarization: -128.34 SS G_CDS: -8.82 Total: -137.16 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.05 Total: -20.95 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -76.10 2.87 -73.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714537089.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.944 kcal (2) G-P(sol) polarization free energy of solvation -76.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds