Wall clock time and date at job start Mon Mar 30 2020 00:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47320 * 2 1 4 4 H 1.09006 * 109.47284 * 54.99961 * 3 2 1 5 5 C 1.53007 * 109.47124 * 174.99877 * 3 2 1 6 6 N 1.46500 * 109.47078 * 174.99910 * 5 3 2 7 7 C 1.34773 * 119.99722 * 179.97438 * 6 5 3 8 8 O 1.21281 * 120.00442 * 0.02562 * 7 6 5 9 9 C 1.50705 * 119.99762 * 179.97438 * 7 6 5 10 10 N 1.46500 * 109.47081 * 180.02562 * 9 7 6 11 11 C 1.34429 * 126.81895 * 124.99841 * 10 9 7 12 12 N 1.30837 * 108.07952 * 180.02562 * 11 10 9 13 13 C 1.33246 * 109.82318 * 359.97438 * 12 11 10 14 14 N 1.30712 * 108.94935 * 0.27015 * 13 12 11 15 15 N 1.46497 * 109.47181 * 294.99705 * 3 2 1 16 16 C 1.36934 * 120.00168 * 84.99907 * 15 3 2 17 17 H 1.08006 * 119.99826 * 359.97438 * 16 15 3 18 18 C 1.38808 * 120.00481 * 180.02562 * 16 15 3 19 19 N 1.31625 * 119.99679 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00546 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46882 * 59.99733 * 20 18 16 22 22 H 1.48496 * 109.47386 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47103 * 300.00472 * 20 18 16 24 24 H 1.09000 * 109.47541 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47282 * 300.00308 * 1 2 3 26 26 H 1.08999 * 109.46879 * 59.99823 * 1 2 3 27 27 H 1.09004 * 109.47282 * 239.99692 * 2 1 3 28 28 H 1.08999 * 109.46879 * 120.00177 * 2 1 3 29 29 H 1.08993 * 109.47323 * 54.99859 * 5 3 2 30 30 H 1.09001 * 109.46543 * 294.99626 * 5 3 2 31 31 H 0.96997 * 120.00182 * 0.02562 * 6 5 3 32 32 H 1.09002 * 109.47196 * 60.00345 * 9 7 6 33 33 H 1.08995 * 109.47509 * 300.00521 * 9 7 6 34 34 H 1.08000 * 125.96340 * 359.97438 * 11 10 9 35 35 H 1.08002 * 125.52127 * 179.97438 * 13 12 11 36 36 H 0.97004 * 119.99915 * 265.00366 * 15 3 2 37 37 H 0.97000 * 119.99912 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5649 1.4442 0.1258 6 7 4.0632 2.8167 0.0060 7 6 5.3857 3.0628 0.0869 8 8 6.1635 2.1482 0.2584 9 6 5.8984 4.4746 -0.0369 10 7 7.3584 4.4763 0.0836 11 6 8.2386 4.9875 -0.7944 12 7 9.4433 4.7892 -0.3239 13 6 9.3726 4.1576 0.8473 14 7 8.1168 3.9393 1.1367 15 7 1.6525 2.0974 -1.2518 16 6 0.4158 2.6734 -1.3689 17 1 -0.2742 2.6445 -0.5385 18 6 0.0484 3.2936 -2.5552 19 7 0.8891 3.3284 -3.5674 20 14 -1.6385 4.0800 -2.7147 21 1 -1.7862 5.1463 -1.6917 22 1 -1.7831 4.6709 -4.0693 23 1 -2.6869 3.0485 -2.5094 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.9955 0.8310 -0.6658 30 1 3.8498 1.0376 1.0961 31 1 3.4411 3.5483 -0.1308 32 1 5.4674 5.0883 0.7541 33 1 5.6138 4.8807 -1.0075 34 1 7.9942 5.4760 -1.7261 35 1 10.2164 3.8684 1.4561 36 1 2.2721 2.1230 -1.9978 37 1 0.6322 3.7614 -4.3965 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715080125.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:33 Heat of formation + Delta-G solvation = 65.305550 kcal Electronic energy + Delta-G solvation = -20042.307262 eV Core-core repulsion = 16857.187852 eV Total energy + Delta-G solvation = -3185.119411 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.05892 -39.45796 -36.82344 -34.00069 -33.84522 -32.45750 -31.19552 -29.91269 -28.93597 -27.16781 -23.87565 -22.83279 -21.98493 -21.93694 -20.38287 -19.85945 -17.67630 -17.38143 -16.95787 -15.91356 -15.53814 -15.23126 -14.90520 -14.63133 -14.13835 -14.06416 -13.62484 -13.22021 -13.21749 -12.98670 -12.56402 -12.17680 -11.83537 -11.51155 -11.04124 -10.95079 -10.82214 -10.52233 -10.28407 -10.23510 -10.12172 -10.03599 -9.76784 -9.62287 -9.45880 -9.04014 -8.79064 -7.13511 -5.90894 -3.20419 1.60808 2.16278 2.68359 2.97457 3.31961 3.34142 3.39481 3.40428 4.28441 4.44872 4.46310 4.74973 4.87682 4.89660 5.26092 5.31498 5.35543 5.47740 5.82763 5.88801 5.89082 6.06463 6.16134 6.34811 6.41924 6.44770 6.49649 6.53837 6.68058 6.76770 6.94385 7.17767 7.57565 7.71454 8.05598 8.26448 8.35215 9.38640 9.92622 10.28796 11.30820 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.022782 B = 0.004289 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.761617 B = 6526.788922 C = 7491.401232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.163 3.837 4 H 0.055 0.945 5 C 0.117 3.883 6 N -0.707 5.707 7 C 0.497 3.503 8 O -0.526 6.526 9 C 0.109 3.891 10 N -0.365 5.365 11 C 0.255 3.745 12 N -0.548 5.548 13 C 0.187 3.813 14 N -0.290 5.290 15 N -0.722 5.722 16 C -0.240 4.240 17 H 0.073 0.927 18 C -0.009 4.009 19 N -0.930 5.930 20 Si 0.903 3.097 21 H -0.286 1.286 22 H -0.292 1.292 23 H -0.286 1.286 24 H 0.033 0.967 25 H 0.040 0.960 26 H 0.085 0.915 27 H 0.056 0.944 28 H 0.043 0.957 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.412 0.588 32 H 0.118 0.882 33 H 0.134 0.866 34 H 0.219 0.781 35 H 0.215 0.785 36 H 0.385 0.615 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.279 2.730 6.847 11.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.053 3.947 4 H 0.073 0.927 5 C -0.007 4.007 6 N -0.360 5.360 7 C 0.280 3.720 8 O -0.402 6.402 9 C -0.018 4.018 10 N -0.156 5.156 11 C -0.042 4.042 12 N -0.276 5.276 13 C -0.116 4.116 14 N -0.117 5.117 15 N -0.364 5.364 16 C -0.371 4.371 17 H 0.091 0.909 18 C -0.206 4.206 19 N -0.578 5.578 20 Si 0.734 3.266 21 H -0.213 1.213 22 H -0.218 1.218 23 H -0.212 1.212 24 H 0.052 0.948 25 H 0.059 0.941 26 H 0.103 0.897 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.248 0.752 32 H 0.136 0.864 33 H 0.152 0.848 34 H 0.236 0.764 35 H 0.231 0.769 36 H 0.219 0.781 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 8.634 1.876 7.469 11.570 hybrid contribution -1.340 0.760 -0.760 1.718 sum 7.294 2.636 6.710 10.256 Atomic orbital electron populations 1.21768 0.95654 0.99706 1.03244 1.22068 0.97023 0.98337 1.00073 1.20570 0.89756 0.92901 0.91469 0.92743 1.21691 0.95679 0.82135 1.01221 1.45873 1.06464 1.11235 1.72460 1.20299 0.83218 0.90351 0.78101 1.90768 1.55851 1.45462 1.48125 1.21647 0.75935 0.97560 1.06609 1.49990 1.06883 1.42678 1.16036 1.26090 0.84619 0.96693 0.96828 1.70518 1.22742 1.22394 1.11916 1.25982 0.94814 0.97103 0.93717 1.78171 1.04400 1.19314 1.09774 1.42452 1.16797 1.65882 1.11262 1.19167 0.92006 1.27832 0.98049 0.90926 1.24723 0.98057 1.01507 0.96304 1.69647 1.35280 1.48921 1.03978 0.86335 0.84225 0.79228 0.76776 1.21279 1.21757 1.21246 0.94832 0.94097 0.89666 0.92520 0.93820 0.91780 0.91746 0.75177 0.86377 0.84831 0.76425 0.76905 0.78128 0.93398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.18 37.16 0.34 -2.18 16 2 C -0.13 -2.22 5.61 -26.73 -0.15 -2.37 16 3 C 0.16 2.83 2.59 -67.93 -0.18 2.65 16 4 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 5 C 0.12 1.86 5.23 -4.04 -0.02 1.84 16 6 N -0.71 -10.36 5.39 -60.29 -0.32 -10.69 16 7 C 0.50 7.42 7.87 -10.98 -0.09 7.33 16 8 O -0.53 -10.10 15.73 5.56 0.09 -10.01 16 9 C 0.11 1.16 7.03 -5.19 -0.04 1.13 16 10 N -0.36 -4.71 3.41 -63.81 -0.22 -4.93 16 11 C 0.25 2.88 12.63 -90.65 -1.14 1.73 16 12 N -0.55 -7.30 11.19 -15.83 -0.18 -7.48 16 13 C 0.19 2.45 13.03 -91.81 -1.20 1.26 16 14 N -0.29 -4.40 11.80 29.29 0.35 -4.05 16 15 N -0.72 -15.40 4.51 -53.42 -0.24 -15.64 16 16 C -0.24 -5.76 7.75 -15.06 -0.12 -5.88 16 17 H 0.07 1.71 7.32 -52.48 -0.38 1.33 16 18 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 19 N -0.93 -25.50 13.06 55.49 0.72 -24.77 16 20 Si 0.90 20.60 29.55 -169.99 -5.02 15.58 16 21 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 24 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.08 1.74 5.99 -51.93 -0.31 1.43 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.41 5.81 8.14 -40.82 -0.33 5.47 16 32 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.13 1.00 8.09 -51.93 -0.42 0.58 16 34 H 0.22 1.43 8.06 -52.49 -0.42 1.01 16 35 H 0.21 1.99 8.06 -52.49 -0.42 1.56 16 36 H 0.38 9.00 7.80 -40.82 -0.32 8.69 16 37 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 319.22 15.07 4.81 4.81 Total: -1.00 -32.63 319.22 -7.82 -40.45 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -5.13 Total: 11.56 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: -2.68 Total: 5.17 kcal Atomic # 7 Polarization: -67.67 SS G_CDS: 0.11 Total: -67.56 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.09 Total: -10.01 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.63 -7.82 -40.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715080125.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.759 kcal (2) G-P(sol) polarization free energy of solvation -32.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds