Wall clock time and date at job start Mon Mar 30 2020 00:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47320 * 2 1 4 4 H 1.09006 * 109.47284 * 54.99961 * 3 2 1 5 5 C 1.53007 * 109.47124 * 174.99877 * 3 2 1 6 6 N 1.46500 * 109.47078 * 174.99910 * 5 3 2 7 7 C 1.34773 * 119.99722 * 179.97438 * 6 5 3 8 8 O 1.21281 * 120.00442 * 0.02562 * 7 6 5 9 9 C 1.50705 * 119.99762 * 179.97438 * 7 6 5 10 10 N 1.46500 * 109.47081 * 180.02562 * 9 7 6 11 11 C 1.34429 * 126.81895 * 124.99841 * 10 9 7 12 12 N 1.30837 * 108.07952 * 180.02562 * 11 10 9 13 13 C 1.33246 * 109.82318 * 359.97438 * 12 11 10 14 14 N 1.30712 * 108.94935 * 0.27015 * 13 12 11 15 15 N 1.46497 * 109.47181 * 294.99705 * 3 2 1 16 16 C 1.36934 * 120.00168 * 84.99907 * 15 3 2 17 17 H 1.08006 * 119.99826 * 359.97438 * 16 15 3 18 18 C 1.38808 * 120.00481 * 180.02562 * 16 15 3 19 19 N 1.31625 * 119.99679 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00546 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46882 * 59.99733 * 20 18 16 22 22 H 1.48496 * 109.47386 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47103 * 300.00472 * 20 18 16 24 24 H 1.09000 * 109.47541 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47282 * 300.00308 * 1 2 3 26 26 H 1.08999 * 109.46879 * 59.99823 * 1 2 3 27 27 H 1.09004 * 109.47282 * 239.99692 * 2 1 3 28 28 H 1.08999 * 109.46879 * 120.00177 * 2 1 3 29 29 H 1.08993 * 109.47323 * 54.99859 * 5 3 2 30 30 H 1.09001 * 109.46543 * 294.99626 * 5 3 2 31 31 H 0.96997 * 120.00182 * 0.02562 * 6 5 3 32 32 H 1.09002 * 109.47196 * 60.00345 * 9 7 6 33 33 H 1.08995 * 109.47509 * 300.00521 * 9 7 6 34 34 H 1.08000 * 125.96340 * 359.97438 * 11 10 9 35 35 H 1.08002 * 125.52127 * 179.97438 * 13 12 11 36 36 H 0.97004 * 119.99915 * 265.00366 * 15 3 2 37 37 H 0.97000 * 119.99912 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5649 1.4442 0.1258 6 7 4.0632 2.8167 0.0060 7 6 5.3857 3.0628 0.0869 8 8 6.1635 2.1482 0.2584 9 6 5.8984 4.4746 -0.0369 10 7 7.3584 4.4763 0.0836 11 6 8.2386 4.9875 -0.7944 12 7 9.4433 4.7892 -0.3239 13 6 9.3726 4.1576 0.8473 14 7 8.1168 3.9393 1.1367 15 7 1.6525 2.0974 -1.2518 16 6 0.4158 2.6734 -1.3689 17 1 -0.2742 2.6445 -0.5385 18 6 0.0484 3.2936 -2.5552 19 7 0.8891 3.3284 -3.5674 20 14 -1.6385 4.0800 -2.7147 21 1 -1.7862 5.1463 -1.6917 22 1 -1.7831 4.6709 -4.0693 23 1 -2.6869 3.0485 -2.5094 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.9955 0.8310 -0.6658 30 1 3.8498 1.0376 1.0961 31 1 3.4411 3.5483 -0.1308 32 1 5.4674 5.0883 0.7541 33 1 5.6138 4.8807 -1.0075 34 1 7.9942 5.4760 -1.7261 35 1 10.2164 3.8684 1.4561 36 1 2.2721 2.1230 -1.9978 37 1 0.6322 3.7614 -4.3965 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715080125.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:32 Heat of formation + Delta-G solvation = 43.465207 kcal Electronic energy + Delta-G solvation = -20043.254331 eV Core-core repulsion = 16857.187852 eV Total energy + Delta-G solvation = -3186.066479 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.98010 -40.68094 -38.29675 -35.26993 -34.96325 -34.12293 -32.14530 -31.51349 -30.21710 -28.37326 -25.55881 -24.19161 -23.01573 -22.86600 -21.69295 -21.16237 -19.27063 -18.39527 -18.22743 -17.13127 -16.70821 -16.58139 -16.14930 -15.74569 -15.62935 -15.16013 -14.95440 -14.60690 -14.48401 -14.30323 -13.92045 -13.50340 -12.98163 -12.81687 -12.73568 -12.71049 -12.37146 -12.12803 -11.88398 -11.63500 -11.36121 -11.30637 -11.00548 -10.87807 -10.74970 -10.50420 -10.05605 -8.95574 -7.85476 -5.12255 0.70092 1.31282 1.53435 1.54580 1.55537 1.59821 2.04362 2.23702 2.62200 3.47619 3.54524 3.57890 3.77111 3.90373 3.97028 4.09819 4.15964 4.37218 4.42838 4.48622 4.55698 4.73996 4.88152 5.09629 5.12628 5.20800 5.25246 5.44725 5.51007 5.56431 5.64117 5.71674 5.86763 6.34827 6.54437 7.12948 7.19946 7.43629 8.14024 8.39914 9.36931 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.022782 B = 0.004289 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.761617 B = 6526.788922 C = 7491.401232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.132 4.132 3 C 0.167 3.833 4 H 0.061 0.939 5 C 0.126 3.874 6 N -0.703 5.703 7 C 0.495 3.505 8 O -0.573 6.573 9 C 0.112 3.888 10 N -0.375 5.375 11 C 0.261 3.739 12 N -0.575 5.575 13 C 0.184 3.816 14 N -0.336 5.336 15 N -0.726 5.726 16 C -0.218 4.218 17 H 0.079 0.921 18 C -0.067 4.067 19 N -0.965 5.965 20 Si 0.956 3.044 21 H -0.278 1.278 22 H -0.304 1.304 23 H -0.287 1.287 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.044 0.956 28 H 0.072 0.928 29 H 0.048 0.952 30 H 0.074 0.926 31 H 0.416 0.584 32 H 0.144 0.856 33 H 0.171 0.829 34 H 0.263 0.737 35 H 0.238 0.762 36 H 0.374 0.626 37 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.982 3.364 7.725 11.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.172 4.172 3 C 0.058 3.942 4 H 0.079 0.921 5 C 0.001 3.999 6 N -0.356 5.356 7 C 0.280 3.720 8 O -0.452 6.452 9 C -0.013 4.013 10 N -0.165 5.165 11 C -0.035 4.035 12 N -0.303 5.303 13 C -0.119 4.119 14 N -0.163 5.163 15 N -0.366 5.366 16 C -0.350 4.350 17 H 0.097 0.903 18 C -0.259 4.259 19 N -0.617 5.617 20 Si 0.787 3.213 21 H -0.204 1.204 22 H -0.231 1.231 23 H -0.213 1.213 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.090 0.910 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.253 0.747 32 H 0.161 0.839 33 H 0.189 0.811 34 H 0.278 0.722 35 H 0.254 0.746 36 H 0.206 0.794 37 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 8.309 2.510 8.398 12.077 hybrid contribution -1.231 0.491 -0.967 1.640 sum 7.078 3.001 7.431 10.692 Atomic orbital electron populations 1.21696 0.95909 1.00540 1.01866 1.22008 0.96686 0.97657 1.00877 1.20680 0.90707 0.93104 0.89718 0.92067 1.21503 0.94397 0.82902 1.01080 1.45831 1.06791 1.10771 1.72164 1.21010 0.82587 0.91763 0.76598 1.90750 1.56819 1.47399 1.50251 1.21885 0.75004 0.94768 1.09627 1.50111 1.07594 1.42901 1.15925 1.26981 0.83847 0.95281 0.97351 1.70544 1.24017 1.23383 1.12323 1.26541 0.95112 0.96287 0.93945 1.78092 1.05402 1.21119 1.11672 1.42541 1.15799 1.66024 1.12272 1.19443 0.92579 1.25449 0.97530 0.90329 1.25294 1.00654 1.03396 0.96595 1.69780 1.36709 1.50926 1.04238 0.85474 0.81269 0.78507 0.76039 1.20373 1.23105 1.21344 0.93061 0.93093 0.93183 0.93742 0.90968 0.93399 0.90813 0.74655 0.83873 0.81142 0.72183 0.74562 0.79422 0.94395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.63 9.18 71.98 0.66 -3.97 16 2 C -0.13 -4.11 5.61 30.59 0.17 -3.94 16 3 C 0.17 5.51 2.59 44.99 0.12 5.62 16 4 H 0.06 1.98 8.08 -2.38 -0.02 1.97 16 5 C 0.13 3.86 5.23 86.38 0.45 4.31 16 6 N -0.70 -19.63 5.39 -463.05 -2.49 -22.12 16 7 C 0.50 14.15 7.87 87.66 0.69 14.84 16 8 O -0.57 -21.85 15.73 -3.03 -0.05 -21.90 16 9 C 0.11 2.12 7.03 85.63 0.60 2.73 16 10 N -0.37 -9.01 3.41 -355.80 -1.21 -10.22 16 11 C 0.26 5.33 12.63 180.36 2.28 7.61 16 12 N -0.57 -14.54 11.19 -203.99 -2.28 -16.82 16 13 C 0.18 4.70 13.03 180.76 2.36 7.05 16 14 N -0.34 -9.97 11.80 -61.24 -0.72 -10.70 16 15 N -0.73 -30.38 4.51 -322.94 -1.46 -31.84 16 16 C -0.22 -10.28 7.75 84.03 0.65 -9.63 16 17 H 0.08 3.58 7.32 -2.91 -0.02 3.55 16 18 C -0.07 -3.41 5.50 84.86 0.47 -2.94 16 19 N -0.97 -53.28 13.06 21.65 0.28 -52.99 16 20 Si 0.96 42.16 29.55 68.60 2.03 44.19 16 21 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 22 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 23 H -0.29 -12.51 7.11 99.48 0.71 -11.81 16 24 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.05 1.98 5.99 -2.39 -0.01 1.96 16 27 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.05 1.63 8.14 -2.39 -0.02 1.62 16 30 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.42 11.00 8.14 -92.71 -0.75 10.24 16 32 H 0.14 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.17 1.93 8.09 -2.39 -0.02 1.91 16 34 H 0.26 2.49 8.06 -2.91 -0.02 2.46 16 35 H 0.24 4.26 8.06 -2.91 -0.02 4.24 16 36 H 0.37 17.43 7.80 -92.71 -0.72 16.71 16 37 H 0.25 13.59 8.31 -92.71 -0.77 12.82 16 Total: -1.00 -71.04 319.22 2.15 -68.89 By element: Atomic # 1 Polarization: 32.22 SS G_CDS: -0.38 Total: 31.83 kcal Atomic # 6 Polarization: 13.24 SS G_CDS: 8.44 Total: 21.69 kcal Atomic # 7 Polarization: -136.81 SS G_CDS: -7.89 Total: -144.70 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -0.05 Total: -21.90 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -71.04 2.15 -68.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715080125.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.355 kcal (2) G-P(sol) polarization free energy of solvation -71.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds