Wall clock time and date at job start Mon Mar 30 2020 00:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.47441 * 2 1 4 4 C 1.53003 * 109.47593 * 239.99782 * 2 1 3 5 5 N 1.46499 * 109.46708 * 64.99829 * 4 2 1 6 6 C 1.36935 * 119.99926 * 180.02562 * 5 4 2 7 7 H 1.08005 * 119.99877 * 359.97438 * 6 5 4 8 8 C 1.38811 * 120.00369 * 179.73019 * 6 5 4 9 9 N 1.31614 * 120.00468 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 119.99699 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.47209 * 90.00536 * 10 8 6 12 12 H 1.48506 * 109.47294 * 210.00384 * 10 8 6 13 13 H 1.48501 * 109.47275 * 330.00287 * 10 8 6 14 14 C 1.52999 * 109.47313 * 119.99784 * 2 1 3 15 15 N 1.46498 * 109.47281 * 295.00596 * 14 2 1 16 16 C 1.34775 * 120.00533 * 179.97438 * 15 14 2 17 17 O 1.21285 * 119.99576 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00168 * 179.97438 * 16 15 14 19 19 N 1.46504 * 109.46876 * 179.97438 * 18 16 15 20 20 C 1.34428 * 126.82409 * 125.00105 * 19 18 16 21 21 N 1.30834 * 108.07917 * 179.97438 * 20 19 18 22 22 C 1.33239 * 109.82812 * 0.02562 * 21 20 19 23 23 N 1.30718 * 108.94425 * 359.74458 * 22 21 20 24 24 H 1.09006 * 109.47245 * 60.00003 * 1 2 3 25 25 H 1.09000 * 109.47110 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47196 * 300.00119 * 1 2 3 27 27 H 1.08998 * 109.46692 * 305.00331 * 4 2 1 28 28 H 1.08994 * 109.47584 * 185.00195 * 4 2 1 29 29 H 0.97005 * 120.00261 * 0.02562 * 5 4 2 30 30 H 0.97000 * 120.00663 * 179.97438 * 9 8 6 31 31 H 1.09000 * 109.46775 * 54.99966 * 14 2 1 32 32 H 1.08998 * 109.47583 * 174.99732 * 14 2 1 33 33 H 0.97002 * 120.00105 * 359.97438 * 15 14 2 34 34 H 1.09000 * 109.47269 * 299.99802 * 18 16 15 35 35 H 1.08994 * 109.47309 * 60.00191 * 18 16 15 36 36 H 1.08001 * 125.96130 * 359.97438 * 20 19 18 37 37 H 1.07997 * 125.52818 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 1.6525 0.0353 -2.4423 6 6 2.0011 -0.4208 -3.6855 7 1 2.5623 -1.3382 -3.7864 8 6 1.6291 0.2931 -4.8163 9 7 1.9638 -0.1456 -6.0113 10 14 0.6521 1.8757 -4.6422 11 1 1.5865 3.0243 -4.5285 12 1 -0.2127 2.0574 -5.8358 13 1 -0.1942 1.8035 -3.4242 14 6 2.0400 -0.7212 1.2492 15 7 1.6523 0.0353 2.4424 16 6 1.9954 -0.4135 3.6660 17 8 2.6248 -1.4441 3.7794 18 6 1.5971 0.3651 4.8932 19 7 2.0844 -0.3262 6.0895 20 6 2.8604 0.1898 7.0583 21 7 3.0735 -0.7448 7.9488 22 6 2.4530 -1.8662 7.5843 23 7 1.8293 -1.6581 6.4546 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.6054 -1.7198 -1.2951 28 1 3.1263 -0.7995 -1.2055 29 1 1.1488 0.8594 -2.3517 30 1 1.7035 0.3530 -6.8015 31 1 1.6053 -1.7197 1.2952 32 1 3.1263 -0.7995 1.2056 33 1 1.1487 0.8594 2.3518 34 1 2.0324 1.3633 4.8474 35 1 0.5109 0.4440 4.9368 36 1 3.2415 1.1996 7.0952 37 1 2.4602 -2.7949 8.1354 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715273444.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:30 Heat of formation + Delta-G solvation = 70.428288 kcal Electronic energy + Delta-G solvation = -19434.086551 eV Core-core repulsion = 16249.189279 eV Total energy + Delta-G solvation = -3184.897272 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.33910 -39.93154 -37.13463 -34.64267 -34.34278 -32.62186 -31.46060 -30.66745 -28.74230 -26.62915 -25.42956 -22.74622 -22.26457 -21.93833 -20.87787 -20.15252 -17.98231 -17.76342 -17.28488 -16.34740 -15.94932 -15.43416 -15.19007 -14.77140 -14.52775 -14.28659 -13.98379 -13.79405 -13.35737 -13.22101 -12.61308 -12.53256 -12.29125 -12.11331 -11.52253 -11.12308 -10.83644 -10.73854 -10.71619 -10.53162 -10.30093 -10.18568 -10.03659 -9.80026 -9.62507 -9.29228 -8.95396 -7.28828 -5.81003 -3.17205 1.32063 1.84330 2.24312 2.72027 2.85243 3.30802 3.33198 3.40170 3.99859 4.04178 4.27426 4.48587 4.53753 4.57606 4.76231 4.94587 4.99138 5.13263 5.49057 5.56912 5.65368 5.75969 5.77834 5.89686 5.97290 6.12356 6.15462 6.22899 6.37581 6.41021 6.58177 6.67195 7.15468 7.78928 7.87885 7.94913 8.37639 9.16210 9.88086 10.07477 11.37402 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.056992 B = 0.002865 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.175904 B = 9771.156226 C = 9996.508234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.114 4.114 3 H 0.077 0.923 4 C 0.165 3.835 5 N -0.754 5.754 6 C -0.245 4.245 7 H 0.090 0.910 8 C 0.004 3.996 9 N -0.933 5.933 10 Si 0.886 3.114 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.278 1.278 14 C 0.128 3.872 15 N -0.722 5.722 16 C 0.496 3.504 17 O -0.511 6.511 18 C 0.111 3.889 19 N -0.370 5.370 20 C 0.254 3.746 21 N -0.545 5.545 22 C 0.192 3.808 23 N -0.289 5.289 24 H 0.064 0.936 25 H 0.058 0.942 26 H 0.044 0.956 27 H 0.031 0.969 28 H 0.030 0.970 29 H 0.361 0.639 30 H 0.260 0.740 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.401 0.599 34 H 0.131 0.869 35 H 0.119 0.881 36 H 0.219 0.781 37 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.750 5.325 25.731 26.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.133 4.133 3 H 0.095 0.905 4 C 0.037 3.963 5 N -0.400 5.400 6 C -0.375 4.375 7 H 0.108 0.892 8 C -0.192 4.192 9 N -0.581 5.581 10 Si 0.716 3.284 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.204 1.204 14 C 0.005 3.995 15 N -0.376 5.376 16 C 0.279 3.721 17 O -0.385 6.385 18 C -0.016 4.016 19 N -0.162 5.162 20 C -0.043 4.043 21 N -0.272 5.272 22 C -0.111 4.111 23 N -0.115 5.115 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.063 0.937 27 H 0.049 0.951 28 H 0.048 0.952 29 H 0.194 0.806 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.236 0.764 34 H 0.149 0.851 35 H 0.137 0.863 36 H 0.236 0.764 37 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -2.446 3.922 25.475 25.891 hybrid contribution -0.909 1.829 -0.301 2.064 sum -3.354 5.751 25.174 26.040 Atomic orbital electron populations 1.21824 0.94681 1.02367 1.01270 1.21610 0.96681 1.00536 0.94507 0.90507 1.20549 0.97241 0.94266 0.84267 1.42673 1.67723 1.27257 1.02344 1.19062 1.29397 1.07322 0.81720 0.89173 1.24686 1.00743 0.98687 0.95093 1.69697 1.51171 1.40320 0.96931 0.86538 0.80258 0.84752 0.76855 1.21092 1.21700 1.20402 1.21429 1.00395 0.95346 0.82333 1.45964 1.57909 1.28026 1.05663 1.20376 0.80794 0.86412 0.84489 1.90824 1.38373 1.23235 1.86025 1.21591 1.02755 0.95674 0.81582 1.49981 1.38766 1.09253 1.18172 1.26086 0.92388 1.00560 0.85242 1.70530 1.26604 1.00437 1.29626 1.26040 0.94384 0.98325 0.92352 1.78212 1.24437 0.93193 1.15689 0.91694 0.92325 0.93673 0.95125 0.95209 0.80642 0.93007 0.90969 0.91024 0.76445 0.85098 0.86290 0.76438 0.76687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 8.94 37.15 0.33 -1.45 16 2 C -0.11 -1.49 2.46 -90.62 -0.22 -1.71 16 3 H 0.08 0.96 8.14 -51.92 -0.42 0.54 16 4 C 0.16 2.99 5.65 -4.04 -0.02 2.96 16 5 N -0.75 -17.21 5.13 -59.91 -0.31 -17.52 16 6 C -0.25 -6.85 10.47 -15.06 -0.16 -7.01 16 7 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 8 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 9 N -0.93 -29.12 13.97 55.49 0.78 -28.35 16 10 Si 0.89 21.52 27.73 -169.99 -4.71 16.80 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.28 -6.22 6.52 56.52 0.37 -5.85 16 14 C 0.13 1.51 5.06 -4.04 -0.02 1.49 16 15 N -0.72 -6.34 5.28 -60.30 -0.32 -6.66 16 16 C 0.50 5.09 7.87 -10.99 -0.09 5.00 16 17 O -0.51 -8.01 15.75 5.55 0.09 -7.92 16 18 C 0.11 0.65 7.03 -5.19 -0.04 0.61 16 19 N -0.37 -3.46 3.40 -63.81 -0.22 -3.68 16 20 C 0.25 2.01 12.63 -90.65 -1.14 0.87 16 21 N -0.55 -5.80 11.19 -15.83 -0.18 -5.98 16 22 C 0.19 2.06 13.03 -91.81 -1.20 0.86 16 23 N -0.29 -3.60 11.83 29.29 0.35 -3.25 16 24 H 0.06 0.95 7.18 -51.93 -0.37 0.57 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.04 0.41 7.18 -51.93 -0.37 0.04 16 27 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.36 7.90 4.72 -40.82 -0.19 7.70 16 30 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.40 2.25 7.66 -40.82 -0.31 1.94 16 34 H 0.13 0.18 8.09 -51.93 -0.42 -0.24 16 35 H 0.12 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.22 0.60 8.06 -52.49 -0.42 0.18 16 37 H 0.22 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 317.97 15.07 4.79 4.79 Total: -1.00 -38.57 317.97 -7.45 -46.02 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -5.07 Total: 4.10 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -2.65 Total: 1.64 kcal Atomic # 7 Polarization: -65.53 SS G_CDS: 0.10 Total: -65.43 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: 0.09 Total: -7.92 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.71 Total: 16.80 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -38.57 -7.45 -46.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715273444.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.446 kcal (2) G-P(sol) polarization free energy of solvation -38.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds