Wall clock time and date at job start Mon Mar 30 2020 00:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.47441 * 2 1 4 4 C 1.53003 * 109.47593 * 239.99782 * 2 1 3 5 5 N 1.46499 * 109.46708 * 64.99829 * 4 2 1 6 6 C 1.36935 * 119.99926 * 180.02562 * 5 4 2 7 7 H 1.08005 * 119.99877 * 359.97438 * 6 5 4 8 8 C 1.38811 * 120.00369 * 179.73019 * 6 5 4 9 9 N 1.31614 * 120.00468 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 119.99699 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.47209 * 90.00536 * 10 8 6 12 12 H 1.48506 * 109.47294 * 210.00384 * 10 8 6 13 13 H 1.48501 * 109.47275 * 330.00287 * 10 8 6 14 14 C 1.52999 * 109.47313 * 119.99784 * 2 1 3 15 15 N 1.46498 * 109.47281 * 295.00596 * 14 2 1 16 16 C 1.34775 * 120.00533 * 179.97438 * 15 14 2 17 17 O 1.21285 * 119.99576 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00168 * 179.97438 * 16 15 14 19 19 N 1.46504 * 109.46876 * 179.97438 * 18 16 15 20 20 C 1.34428 * 126.82409 * 125.00105 * 19 18 16 21 21 N 1.30834 * 108.07917 * 179.97438 * 20 19 18 22 22 C 1.33239 * 109.82812 * 0.02562 * 21 20 19 23 23 N 1.30718 * 108.94425 * 359.74458 * 22 21 20 24 24 H 1.09006 * 109.47245 * 60.00003 * 1 2 3 25 25 H 1.09000 * 109.47110 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47196 * 300.00119 * 1 2 3 27 27 H 1.08998 * 109.46692 * 305.00331 * 4 2 1 28 28 H 1.08994 * 109.47584 * 185.00195 * 4 2 1 29 29 H 0.97005 * 120.00261 * 0.02562 * 5 4 2 30 30 H 0.97000 * 120.00663 * 179.97438 * 9 8 6 31 31 H 1.09000 * 109.46775 * 54.99966 * 14 2 1 32 32 H 1.08998 * 109.47583 * 174.99732 * 14 2 1 33 33 H 0.97002 * 120.00105 * 359.97438 * 15 14 2 34 34 H 1.09000 * 109.47269 * 299.99802 * 18 16 15 35 35 H 1.08994 * 109.47309 * 60.00191 * 18 16 15 36 36 H 1.08001 * 125.96130 * 359.97438 * 20 19 18 37 37 H 1.07997 * 125.52818 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 1.6525 0.0353 -2.4423 6 6 2.0011 -0.4208 -3.6855 7 1 2.5623 -1.3382 -3.7864 8 6 1.6291 0.2931 -4.8163 9 7 1.9638 -0.1456 -6.0113 10 14 0.6521 1.8757 -4.6422 11 1 1.5865 3.0243 -4.5285 12 1 -0.2127 2.0574 -5.8358 13 1 -0.1942 1.8035 -3.4242 14 6 2.0400 -0.7212 1.2492 15 7 1.6523 0.0353 2.4424 16 6 1.9954 -0.4135 3.6660 17 8 2.6248 -1.4441 3.7794 18 6 1.5971 0.3651 4.8932 19 7 2.0844 -0.3262 6.0895 20 6 2.8604 0.1898 7.0583 21 7 3.0735 -0.7448 7.9488 22 6 2.4530 -1.8662 7.5843 23 7 1.8293 -1.6581 6.4546 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.6054 -1.7198 -1.2951 28 1 3.1263 -0.7995 -1.2055 29 1 1.1488 0.8594 -2.3517 30 1 1.7035 0.3530 -6.8015 31 1 1.6053 -1.7197 1.2952 32 1 3.1263 -0.7995 1.2056 33 1 1.1487 0.8594 2.3518 34 1 2.0324 1.3633 4.8474 35 1 0.5109 0.4440 4.9368 36 1 3.2415 1.1996 7.0952 37 1 2.4602 -2.7949 8.1354 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715273444.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:29 Heat of formation + Delta-G solvation = 41.563960 kcal Electronic energy + Delta-G solvation = -19435.338203 eV Core-core repulsion = 16249.189279 eV Total energy + Delta-G solvation = -3186.148923 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.98142 -40.77410 -38.38080 -36.09086 -34.99065 -34.17324 -32.45356 -32.13750 -29.45243 -27.83187 -26.78777 -24.11474 -23.12288 -22.87279 -21.74726 -21.32957 -19.68668 -18.43215 -18.27157 -17.19212 -16.81618 -16.49488 -16.25563 -15.96994 -15.61645 -15.43076 -15.07847 -14.91512 -14.56459 -14.31004 -13.95760 -13.71377 -13.50637 -13.20887 -12.87595 -12.75167 -12.18878 -12.13132 -12.01877 -11.76529 -11.70149 -11.36118 -11.00194 -10.99197 -10.76243 -10.52251 -10.15680 -9.31620 -8.03415 -5.38173 0.69962 1.33421 1.37106 1.43167 1.50539 1.51571 2.02799 2.14398 2.48765 3.27579 3.49928 3.55479 3.57179 3.74731 3.92397 4.00133 4.10001 4.13272 4.18216 4.42995 4.51321 4.66694 4.76055 4.91628 5.02012 5.08259 5.26217 5.26444 5.34658 5.45940 5.48488 5.74210 5.89646 6.19897 6.49049 7.07138 7.13254 7.19332 7.81384 8.03026 9.18275 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.056992 B = 0.002865 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.175904 B = 9771.156226 C = 9996.508234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.096 4.096 3 H 0.095 0.905 4 C 0.157 3.843 5 N -0.753 5.753 6 C -0.240 4.240 7 H 0.050 0.950 8 C -0.068 4.068 9 N -0.986 5.986 10 Si 0.962 3.038 11 H -0.275 1.275 12 H -0.298 1.298 13 H -0.243 1.243 14 C 0.139 3.861 15 N -0.706 5.706 16 C 0.493 3.507 17 O -0.573 6.573 18 C 0.112 3.888 19 N -0.378 5.378 20 C 0.264 3.736 21 N -0.579 5.579 22 C 0.183 3.817 23 N -0.339 5.339 24 H 0.047 0.953 25 H 0.048 0.952 26 H 0.086 0.914 27 H 0.020 0.980 28 H 0.022 0.978 29 H 0.370 0.630 30 H 0.258 0.742 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.421 0.579 34 H 0.187 0.813 35 H 0.147 0.853 36 H 0.269 0.731 37 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.115 8.739 28.044 29.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.115 4.115 3 H 0.113 0.887 4 C 0.031 3.969 5 N -0.399 5.399 6 C -0.371 4.371 7 H 0.068 0.932 8 C -0.260 4.260 9 N -0.637 5.637 10 Si 0.788 3.212 11 H -0.201 1.201 12 H -0.225 1.225 13 H -0.167 1.167 14 C 0.014 3.986 15 N -0.360 5.360 16 C 0.279 3.721 17 O -0.451 6.451 18 C -0.012 4.012 19 N -0.169 5.169 20 C -0.032 4.032 21 N -0.307 5.307 22 C -0.120 4.120 23 N -0.166 5.166 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.104 0.896 27 H 0.038 0.962 28 H 0.040 0.960 29 H 0.204 0.796 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.260 0.740 34 H 0.204 0.796 35 H 0.164 0.836 36 H 0.285 0.715 37 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -3.843 7.376 27.836 29.052 hybrid contribution -0.403 0.685 -1.025 1.297 sum -4.247 8.061 26.811 28.317 Atomic orbital electron populations 1.21818 0.93577 1.02155 1.02403 1.21388 0.97360 1.00624 0.92110 0.88695 1.20712 0.96886 0.94147 0.85202 1.42597 1.67662 1.27853 1.01793 1.19023 1.28107 1.05827 0.84138 0.93185 1.25631 1.02646 1.03216 0.94469 1.69905 1.53285 1.42464 0.98016 0.85320 0.78771 0.79321 0.77806 1.20093 1.22466 1.16737 1.21064 0.99421 0.94930 0.83165 1.45723 1.57544 1.28276 1.04438 1.21199 0.79381 0.85810 0.85744 1.90813 1.41267 1.26143 1.86924 1.22007 1.04772 0.96491 0.77960 1.50162 1.39046 1.08440 1.19256 1.27054 0.90522 1.01729 0.83851 1.70526 1.27766 1.01074 1.31284 1.26466 0.94041 0.99251 0.92202 1.78110 1.26150 0.95662 1.16659 0.93429 0.93330 0.89564 0.96237 0.95977 0.79627 0.93286 0.92618 0.92384 0.74030 0.79564 0.83572 0.71531 0.75124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.94 71.98 0.64 -2.41 16 2 C -0.10 -2.27 2.46 -10.80 -0.03 -2.30 16 3 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 4 C 0.16 5.67 5.65 86.38 0.49 6.16 16 5 N -0.75 -33.73 5.13 -343.46 -1.76 -35.50 16 6 C -0.24 -13.68 10.47 84.03 0.88 -12.79 16 7 H 0.05 3.18 8.06 -2.91 -0.02 3.15 16 8 C -0.07 -4.00 5.50 84.86 0.47 -3.54 16 9 N -0.99 -63.30 13.97 21.65 0.30 -63.00 16 10 Si 0.96 43.76 27.73 68.60 1.90 45.66 16 11 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 12 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 13 H -0.24 -9.58 6.52 99.48 0.65 -8.93 16 14 C 0.14 3.06 5.06 86.38 0.44 3.50 16 15 N -0.71 -10.02 5.28 -463.07 -2.45 -12.46 16 16 C 0.49 8.85 7.87 87.66 0.69 9.54 16 17 O -0.57 -17.74 15.75 -3.05 -0.05 -17.79 16 18 C 0.11 0.83 7.03 85.63 0.60 1.43 16 19 N -0.38 -6.08 3.40 -355.81 -1.21 -7.29 16 20 C 0.26 3.39 12.63 180.36 2.28 5.66 16 21 N -0.58 -11.54 11.19 -204.00 -2.28 -13.82 16 22 C 0.18 3.89 13.03 180.76 2.36 6.25 16 23 N -0.34 -8.25 11.83 -61.25 -0.72 -8.97 16 24 H 0.05 1.21 7.18 -2.38 -0.02 1.20 16 25 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.09 1.15 7.18 -2.39 -0.02 1.13 16 27 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.37 15.19 4.72 -92.70 -0.44 14.76 16 30 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 31 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.42 2.54 7.66 -92.71 -0.71 1.83 16 34 H 0.19 -0.73 8.09 -2.39 -0.02 -0.75 16 35 H 0.15 0.36 8.14 -2.39 -0.02 0.34 16 36 H 0.27 0.12 8.06 -2.91 -0.02 0.09 16 37 H 0.23 3.46 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -89.94 317.97 2.43 -87.52 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -0.11 Total: 14.16 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: 8.81 Total: 11.49 kcal Atomic # 7 Polarization: -132.92 SS G_CDS: -8.12 Total: -141.04 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.05 Total: -17.79 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 1.90 Total: 45.66 kcal Total: -89.94 2.43 -87.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715273444.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.079 kcal (2) G-P(sol) polarization free energy of solvation -89.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds