Wall clock time and date at job start Mon Mar 30 2020 00:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47165 * 2 1 4 4 C 1.52997 * 109.46729 * 119.99871 * 2 1 3 5 5 N 1.46506 * 109.47289 * 294.99928 * 4 2 1 6 6 C 1.36930 * 120.00258 * 180.02562 * 5 4 2 7 7 H 1.08004 * 119.99823 * 0.02562 * 6 5 4 8 8 C 1.38815 * 120.00439 * 179.97438 * 6 5 4 9 9 N 1.31618 * 119.99225 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00268 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47411 * 0.02562 * 10 8 6 12 12 H 1.48496 * 109.46826 * 120.00327 * 10 8 6 13 13 H 1.48495 * 109.47136 * 239.99966 * 10 8 6 14 14 C 1.53001 * 109.47347 * 239.99678 * 2 1 3 15 15 N 1.46503 * 109.47149 * 65.00153 * 14 2 1 16 16 C 1.34769 * 119.99831 * 179.97438 * 15 14 2 17 17 O 1.21280 * 120.00233 * 0.02562 * 16 15 14 18 18 C 1.50702 * 119.99882 * 180.02562 * 16 15 14 19 19 N 1.46494 * 109.47495 * 180.02562 * 18 16 15 20 20 C 1.34433 * 126.82800 * 124.99652 * 19 18 16 21 21 N 1.30828 * 108.07849 * 179.97438 * 20 19 18 22 22 C 1.33237 * 109.83177 * 0.02562 * 21 20 19 23 23 N 1.30714 * 108.94678 * 359.75142 * 22 21 20 24 24 H 1.09004 * 109.46683 * 60.00598 * 1 2 3 25 25 H 1.09002 * 109.47620 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47757 * 300.00616 * 1 2 3 27 27 H 1.09001 * 109.47289 * 174.99800 * 4 2 1 28 28 H 1.09004 * 109.47261 * 55.00056 * 4 2 1 29 29 H 0.97001 * 119.99251 * 0.02562 * 5 4 2 30 30 H 0.97000 * 119.99950 * 179.97438 * 9 8 6 31 31 H 1.08995 * 109.47104 * 185.00632 * 14 2 1 32 32 H 1.09005 * 109.47062 * 305.00281 * 14 2 1 33 33 H 0.97002 * 119.99560 * 359.97438 * 15 14 2 34 34 H 1.09005 * 109.47433 * 300.00035 * 18 16 15 35 35 H 1.09000 * 109.47417 * 59.99690 * 18 16 15 36 36 H 1.08003 * 125.95980 * 0.02562 * 20 19 18 37 37 H 1.07998 * 125.53036 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6523 0.0354 2.4424 6 6 2.0017 -0.4201 3.6856 7 1 2.5634 -1.3371 3.7865 8 6 1.6349 0.2971 4.8161 9 7 0.9509 1.4147 4.6930 10 14 2.1110 -0.3248 6.5119 11 1 2.8709 -1.5937 6.3786 12 1 2.9568 0.6891 7.1914 13 1 0.8843 -0.5638 7.3138 14 6 2.0401 -0.7213 -1.2492 15 7 1.6526 0.0352 -2.4424 16 6 1.9966 -0.4132 -3.6658 17 8 2.6266 -1.4434 -3.7791 18 6 1.5985 0.3653 -4.8932 19 7 2.0867 -0.3254 -6.0893 20 6 1.3563 -0.7197 -7.1467 21 7 2.1597 -1.2976 -8.0024 22 6 3.4048 -1.2918 -7.5283 23 7 3.4119 -0.7027 -6.3614 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 3.1262 -0.7995 1.2057 28 1 1.6052 -1.7198 1.2952 29 1 1.1481 0.8591 2.3517 30 1 0.6942 1.9158 5.4829 31 1 3.1263 -0.7996 -1.2054 32 1 1.6054 -1.7199 -1.2951 33 1 1.1483 0.8590 -2.3518 34 1 0.5122 0.4436 -4.9374 35 1 2.0331 1.3638 -4.8470 36 1 0.2920 -0.5825 -7.2690 37 1 4.2688 -1.7035 -8.0286 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715273447.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:32 Heat of formation + Delta-G solvation = 65.822962 kcal Electronic energy + Delta-G solvation = -19363.597783 eV Core-core repulsion = 16178.500809 eV Total energy + Delta-G solvation = -3185.096974 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.30181 -39.86199 -36.97613 -34.49760 -34.29652 -32.59060 -31.42505 -30.21063 -28.64024 -26.43028 -25.22213 -22.88379 -22.22705 -22.15655 -20.79991 -19.94557 -17.82911 -17.66618 -16.96366 -16.12570 -16.00073 -15.47464 -15.05014 -14.61985 -14.56478 -14.27133 -13.85902 -13.66335 -13.30778 -13.06046 -12.64014 -12.37442 -12.14301 -12.06170 -11.12665 -10.97465 -10.78331 -10.65660 -10.59315 -10.43402 -10.26721 -10.06267 -9.99669 -9.79899 -9.67956 -9.21429 -8.92406 -6.96946 -5.81416 -3.09864 1.36023 1.88675 2.30470 2.75548 2.92226 3.40873 3.47077 3.49008 4.03660 4.08835 4.33927 4.54318 4.55568 4.61326 4.94731 4.99156 5.12495 5.28813 5.53551 5.71023 5.86029 5.89008 5.93216 6.01416 6.13936 6.18831 6.28351 6.34511 6.44992 6.57947 6.70495 6.79500 7.23510 7.67390 7.82569 7.94456 8.37770 9.49265 10.05764 10.40570 11.41675 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.065794 B = 0.002674 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.467548 B =10468.835123 C =10704.845004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.077 0.923 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.238 4.238 7 H 0.071 0.929 8 C -0.015 4.015 9 N -0.934 5.934 10 Si 0.908 3.092 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.128 3.872 15 N -0.721 5.721 16 C 0.496 3.504 17 O -0.513 6.513 18 C 0.110 3.890 19 N -0.370 5.370 20 C 0.254 3.746 21 N -0.546 5.546 22 C 0.191 3.809 23 N -0.289 5.289 24 H 0.042 0.958 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.021 0.979 28 H 0.022 0.978 29 H 0.384 0.616 30 H 0.255 0.745 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.402 0.598 34 H 0.131 0.869 35 H 0.120 0.880 36 H 0.219 0.781 37 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.456 0.527 -22.518 22.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.096 0.904 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.089 0.911 8 C -0.211 4.211 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.218 1.218 14 C 0.005 3.995 15 N -0.374 5.374 16 C 0.279 3.721 17 O -0.387 6.387 18 C -0.016 4.016 19 N -0.161 5.161 20 C -0.043 4.043 21 N -0.272 5.272 22 C -0.112 4.112 23 N -0.115 5.115 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.089 0.911 27 H 0.039 0.961 28 H 0.040 0.960 29 H 0.218 0.782 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.236 0.764 34 H 0.149 0.851 35 H 0.138 0.862 36 H 0.236 0.764 37 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -1.382 -0.352 -22.268 22.314 hybrid contribution -0.453 0.489 1.179 1.355 sum -1.835 0.137 -21.089 21.169 Atomic orbital electron populations 1.21796 0.94597 1.01968 1.01513 1.21560 0.96737 1.00543 0.94116 0.90427 1.20574 0.96667 0.94212 0.85348 1.42339 1.66916 1.27696 1.00594 1.19282 1.28602 1.05458 0.83620 0.91092 1.24741 1.01009 0.97397 0.97910 1.69662 1.43604 1.16642 1.28425 0.86102 0.77609 0.77864 0.84547 1.20525 1.21852 1.21847 1.21452 1.00340 0.95189 0.82543 1.45973 1.57718 1.28078 1.05641 1.20367 0.80786 0.86373 0.84551 1.90815 1.38116 1.23664 1.86099 1.21602 1.01760 0.96511 0.81763 1.49984 1.06139 1.44406 1.15578 1.26080 0.99935 0.94368 0.83923 1.70521 1.01850 1.23549 1.31329 1.26033 0.96004 0.98255 0.90880 1.78218 0.96336 1.19623 1.17321 0.93939 0.92803 0.91059 0.96095 0.95987 0.78215 0.93557 0.91174 0.91240 0.76359 0.85106 0.86240 0.76441 0.76713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 8.94 37.16 0.33 -1.56 16 2 C -0.11 -1.57 2.46 -90.62 -0.22 -1.80 16 3 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 4 C 0.16 3.08 5.65 -4.04 -0.02 3.06 16 5 N -0.73 -17.89 5.33 -59.90 -0.32 -18.21 16 6 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 7 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 8 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 9 N -0.93 -27.76 13.06 55.49 0.72 -27.04 16 10 Si 0.91 22.25 29.55 -169.99 -5.02 17.22 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 13 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 14 C 0.13 1.62 5.06 -4.04 -0.02 1.60 16 15 N -0.72 -6.90 5.28 -60.29 -0.32 -7.21 16 16 C 0.50 5.38 7.87 -10.99 -0.09 5.30 16 17 O -0.51 -8.30 15.75 5.56 0.09 -8.22 16 18 C 0.11 0.70 7.03 -5.20 -0.04 0.67 16 19 N -0.37 -3.61 3.40 -63.81 -0.22 -3.82 16 20 C 0.25 2.09 12.63 -90.65 -1.14 0.94 16 21 N -0.55 -5.95 11.19 -15.83 -0.18 -6.12 16 22 C 0.19 2.11 13.03 -91.82 -1.20 0.91 16 23 N -0.29 -3.71 11.83 29.29 0.35 -3.36 16 24 H 0.04 0.42 7.18 -51.93 -0.37 0.05 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.07 1.15 7.18 -51.93 -0.37 0.78 16 27 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.38 9.73 6.85 -40.82 -0.28 9.45 16 30 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.40 2.62 7.65 -40.82 -0.31 2.31 16 34 H 0.13 0.24 8.09 -51.93 -0.42 -0.18 16 35 H 0.12 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.22 0.66 8.06 -52.48 -0.42 0.24 16 37 H 0.22 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 321.08 15.07 4.84 4.84 Total: -1.00 -37.56 321.08 -7.81 -45.37 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -5.11 Total: 4.69 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -2.64 Total: 1.86 kcal Atomic # 7 Polarization: -65.81 SS G_CDS: 0.04 Total: -65.78 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: 0.09 Total: -8.22 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -37.56 -7.81 -45.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715273447.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.195 kcal (2) G-P(sol) polarization free energy of solvation -37.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds