Wall clock time and date at job start Mon Mar 30 2020 00:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47165 * 2 1 4 4 C 1.52997 * 109.46729 * 119.99871 * 2 1 3 5 5 N 1.46506 * 109.47289 * 294.99928 * 4 2 1 6 6 C 1.36930 * 120.00258 * 180.02562 * 5 4 2 7 7 H 1.08004 * 119.99823 * 0.02562 * 6 5 4 8 8 C 1.38815 * 120.00439 * 179.97438 * 6 5 4 9 9 N 1.31618 * 119.99225 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00268 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47411 * 0.02562 * 10 8 6 12 12 H 1.48496 * 109.46826 * 120.00327 * 10 8 6 13 13 H 1.48495 * 109.47136 * 239.99966 * 10 8 6 14 14 C 1.53001 * 109.47347 * 239.99678 * 2 1 3 15 15 N 1.46503 * 109.47149 * 65.00153 * 14 2 1 16 16 C 1.34769 * 119.99831 * 179.97438 * 15 14 2 17 17 O 1.21280 * 120.00233 * 0.02562 * 16 15 14 18 18 C 1.50702 * 119.99882 * 180.02562 * 16 15 14 19 19 N 1.46494 * 109.47495 * 180.02562 * 18 16 15 20 20 C 1.34433 * 126.82800 * 124.99652 * 19 18 16 21 21 N 1.30828 * 108.07849 * 179.97438 * 20 19 18 22 22 C 1.33237 * 109.83177 * 0.02562 * 21 20 19 23 23 N 1.30714 * 108.94678 * 359.75142 * 22 21 20 24 24 H 1.09004 * 109.46683 * 60.00598 * 1 2 3 25 25 H 1.09002 * 109.47620 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47757 * 300.00616 * 1 2 3 27 27 H 1.09001 * 109.47289 * 174.99800 * 4 2 1 28 28 H 1.09004 * 109.47261 * 55.00056 * 4 2 1 29 29 H 0.97001 * 119.99251 * 0.02562 * 5 4 2 30 30 H 0.97000 * 119.99950 * 179.97438 * 9 8 6 31 31 H 1.08995 * 109.47104 * 185.00632 * 14 2 1 32 32 H 1.09005 * 109.47062 * 305.00281 * 14 2 1 33 33 H 0.97002 * 119.99560 * 359.97438 * 15 14 2 34 34 H 1.09005 * 109.47433 * 300.00035 * 18 16 15 35 35 H 1.09000 * 109.47417 * 59.99690 * 18 16 15 36 36 H 1.08003 * 125.95980 * 0.02562 * 20 19 18 37 37 H 1.07998 * 125.53036 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6523 0.0354 2.4424 6 6 2.0017 -0.4201 3.6856 7 1 2.5634 -1.3371 3.7865 8 6 1.6349 0.2971 4.8161 9 7 0.9509 1.4147 4.6930 10 14 2.1110 -0.3248 6.5119 11 1 2.8709 -1.5937 6.3786 12 1 2.9568 0.6891 7.1914 13 1 0.8843 -0.5638 7.3138 14 6 2.0401 -0.7213 -1.2492 15 7 1.6526 0.0352 -2.4424 16 6 1.9966 -0.4132 -3.6658 17 8 2.6266 -1.4434 -3.7791 18 6 1.5985 0.3653 -4.8932 19 7 2.0867 -0.3254 -6.0893 20 6 1.3563 -0.7197 -7.1467 21 7 2.1597 -1.2976 -8.0024 22 6 3.4048 -1.2918 -7.5283 23 7 3.4119 -0.7027 -6.3614 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 3.1262 -0.7995 1.2057 28 1 1.6052 -1.7198 1.2952 29 1 1.1481 0.8591 2.3517 30 1 0.6942 1.9158 5.4829 31 1 3.1263 -0.7996 -1.2054 32 1 1.6054 -1.7199 -1.2951 33 1 1.1483 0.8590 -2.3518 34 1 0.5122 0.4436 -4.9374 35 1 2.0331 1.3638 -4.8470 36 1 0.2920 -0.5825 -7.2690 37 1 4.2688 -1.7035 -8.0286 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715273447.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:32 Heat of formation + Delta-G solvation = 38.655716 kcal Electronic energy + Delta-G solvation = -19364.775843 eV Core-core repulsion = 16178.500809 eV Total energy + Delta-G solvation = -3186.275034 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.97772 -40.76622 -38.27755 -36.01071 -34.98605 -34.11758 -32.15627 -31.95563 -29.41678 -27.65727 -26.75950 -24.43396 -23.14744 -22.86735 -21.71417 -21.16311 -19.28041 -18.40688 -18.25651 -17.09228 -16.88672 -16.46818 -16.33482 -15.72751 -15.65355 -15.44694 -15.12166 -14.83165 -14.53839 -14.24293 -13.85017 -13.57092 -13.45061 -12.96964 -12.84567 -12.75222 -12.19908 -12.13754 -12.00360 -11.72825 -11.66937 -11.34940 -10.99738 -10.96935 -10.75878 -10.51981 -10.15203 -9.00868 -7.97413 -5.25334 0.70596 1.33502 1.47015 1.47291 1.51651 1.57420 2.03376 2.15299 2.55314 3.36581 3.53742 3.56335 3.71456 3.75405 3.95685 4.06249 4.12021 4.18509 4.33784 4.43457 4.53971 4.68885 4.76776 4.93648 5.05969 5.11834 5.26529 5.29908 5.39484 5.48333 5.48991 5.50188 5.90086 6.25970 6.49229 7.13474 7.18954 7.32910 8.07659 8.32373 9.26168 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.065794 B = 0.002674 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.467548 B =10468.835123 C =10704.845004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.093 4.093 3 H 0.081 0.919 4 C 0.155 3.845 5 N -0.741 5.741 6 C -0.246 4.246 7 H 0.071 0.929 8 C -0.073 4.073 9 N -0.967 5.967 10 Si 0.971 3.029 11 H -0.269 1.269 12 H -0.292 1.292 13 H -0.291 1.291 14 C 0.141 3.859 15 N -0.706 5.706 16 C 0.494 3.506 17 O -0.573 6.573 18 C 0.112 3.888 19 N -0.378 5.378 20 C 0.265 3.735 21 N -0.578 5.578 22 C 0.183 3.817 23 N -0.340 5.340 24 H 0.084 0.916 25 H 0.049 0.951 26 H 0.041 0.959 27 H 0.016 0.984 28 H 0.019 0.981 29 H 0.378 0.622 30 H 0.252 0.748 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.420 0.580 34 H 0.188 0.812 35 H 0.145 0.855 36 H 0.270 0.730 37 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.746 1.145 -23.661 23.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.112 4.112 3 H 0.100 0.900 4 C 0.028 3.972 5 N -0.384 5.384 6 C -0.378 4.378 7 H 0.089 0.911 8 C -0.266 4.266 9 N -0.617 5.617 10 Si 0.801 3.199 11 H -0.194 1.194 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.016 3.984 15 N -0.360 5.360 16 C 0.279 3.721 17 O -0.451 6.451 18 C -0.012 4.012 19 N -0.169 5.169 20 C -0.031 4.031 21 N -0.306 5.306 22 C -0.119 4.119 23 N -0.167 5.167 24 H 0.103 0.897 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.034 0.966 28 H 0.037 0.963 29 H 0.210 0.790 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.259 0.741 34 H 0.205 0.795 35 H 0.163 0.837 36 H 0.285 0.715 37 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -2.685 0.286 -23.425 23.580 hybrid contribution -0.067 0.274 1.490 1.517 sum -2.753 0.560 -21.935 22.114 Atomic orbital electron populations 1.21735 0.93463 1.01930 1.02118 1.21327 0.97445 1.00059 0.92392 0.90025 1.20735 0.96367 0.94177 0.85939 1.42497 1.66758 1.27861 1.01284 1.19640 1.27786 1.05259 0.85126 0.91056 1.25521 1.01705 0.97906 1.01434 1.69796 1.45033 1.17825 1.29078 0.85102 0.77137 0.77577 0.80119 1.19398 1.21943 1.21851 1.21065 0.99167 0.95020 0.83114 1.45756 1.57429 1.28318 1.04530 1.21186 0.79384 0.85769 0.85736 1.90801 1.40826 1.26535 1.86966 1.21995 1.05072 0.95906 0.78250 1.50156 1.05297 1.44702 1.16744 1.27061 1.01455 0.91983 0.82608 1.70523 1.02152 1.25099 1.32817 1.26469 0.96962 0.97837 0.90660 1.78118 0.98911 1.21309 1.18350 0.89707 0.93173 0.93995 0.96643 0.96287 0.78954 0.93903 0.92870 0.92056 0.74134 0.79511 0.83748 0.71491 0.75082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 8.94 71.98 0.64 -2.73 16 2 C -0.09 -2.55 2.46 -10.79 -0.03 -2.57 16 3 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 4 C 0.15 5.97 5.65 86.38 0.49 6.46 16 5 N -0.74 -36.57 5.33 -343.44 -1.83 -38.40 16 6 C -0.25 -13.69 9.99 84.04 0.84 -12.85 16 7 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 8 C -0.07 -4.16 5.50 84.86 0.47 -3.70 16 9 N -0.97 -57.93 13.06 21.65 0.28 -57.65 16 10 Si 0.97 45.86 29.55 68.60 2.03 47.89 16 11 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 12 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 13 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 14 C 0.14 3.42 5.06 86.38 0.44 3.86 16 15 N -0.71 -11.64 5.28 -463.06 -2.45 -14.09 16 16 C 0.49 9.63 7.87 87.66 0.69 10.32 16 17 O -0.57 -18.36 15.75 -3.03 -0.05 -18.41 16 18 C 0.11 1.00 7.03 85.63 0.60 1.60 16 19 N -0.38 -6.46 3.40 -355.81 -1.21 -7.67 16 20 C 0.26 3.57 12.63 180.36 2.28 5.85 16 21 N -0.58 -11.84 11.19 -204.00 -2.28 -14.12 16 22 C 0.18 4.01 13.03 180.77 2.36 6.37 16 23 N -0.34 -8.59 11.83 -61.25 -0.72 -9.31 16 24 H 0.08 1.38 7.18 -2.39 -0.02 1.36 16 25 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.04 1.31 7.18 -2.39 -0.02 1.29 16 27 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.38 19.37 6.85 -92.71 -0.63 18.73 16 30 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 31 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 33 H 0.42 3.78 7.65 -92.71 -0.71 3.07 16 34 H 0.19 -0.49 8.09 -2.38 -0.02 -0.51 16 35 H 0.14 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.27 0.28 8.06 -2.91 -0.02 0.26 16 37 H 0.23 3.59 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -84.93 321.08 2.29 -82.64 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -0.25 Total: 16.50 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: 8.77 Total: 12.60 kcal Atomic # 7 Polarization: -133.02 SS G_CDS: -8.21 Total: -141.23 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -0.05 Total: -18.41 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -84.93 2.29 -82.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715273447.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.297 kcal (2) G-P(sol) polarization free energy of solvation -84.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds