Wall clock time and date at job start Mon Mar 30 2020 00:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36932 * 120.00180 * 2 1 4 4 H 1.07996 * 120.00505 * 203.04867 * 3 2 1 5 5 C 1.38820 * 119.99637 * 23.04164 * 3 2 1 6 6 N 1.31610 * 120.00164 * 12.92967 * 5 3 2 7 7 Si 1.86801 * 119.99515 * 192.92615 * 5 3 2 8 8 H 1.48497 * 109.47311 * 60.00350 * 7 5 3 9 9 H 1.48504 * 109.46772 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47410 * 300.00227 * 7 5 3 11 11 C 1.46504 * 119.99569 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.46662 * 90.00398 * 11 2 1 13 13 N 1.46505 * 109.46869 * 179.97438 * 12 11 2 14 14 C 1.46497 * 120.00029 * 270.00077 * 13 12 11 15 15 C 1.34776 * 120.00044 * 89.99497 * 13 12 11 16 16 O 1.21281 * 119.99971 * 0.02562 * 15 13 12 17 17 C 1.50698 * 119.99856 * 180.02562 * 15 13 12 18 18 N 1.46504 * 109.46735 * 180.02562 * 17 15 13 19 19 C 1.34438 * 126.82218 * 125.00231 * 18 17 15 20 20 N 1.30823 * 108.07440 * 179.97438 * 19 18 17 21 21 C 1.33236 * 109.83399 * 0.02562 * 20 19 18 22 22 N 1.30713 * 108.94352 * 0.26074 * 21 20 19 23 23 H 1.08996 * 109.47093 * 275.12704 * 1 2 3 24 24 H 1.09005 * 109.47087 * 35.12331 * 1 2 3 25 25 H 1.09003 * 109.47347 * 155.12273 * 1 2 3 26 26 H 0.97008 * 120.00134 * 179.97438 * 6 5 3 27 27 H 1.08990 * 109.47319 * 329.99782 * 11 2 1 28 28 H 1.09003 * 109.46586 * 210.00019 * 11 2 1 29 29 H 1.08999 * 109.47885 * 59.99848 * 12 11 2 30 30 H 1.09003 * 109.47311 * 299.99178 * 12 11 2 31 31 H 1.09002 * 109.47188 * 270.00013 * 14 13 12 32 32 H 1.08997 * 109.47248 * 29.99666 * 14 13 12 33 33 H 1.08997 * 109.47255 * 149.99622 * 14 13 12 34 34 H 1.08996 * 109.47266 * 60.00062 * 17 15 13 35 35 H 1.09004 * 109.47348 * 300.00271 * 17 15 13 36 36 H 1.07996 * 125.95919 * 359.97315 * 19 18 17 37 37 H 1.08007 * 125.53021 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1651 1.2232 -0.3662 5 6 1.5387 2.3401 0.4706 6 7 0.4118 2.2597 1.1457 7 14 2.3160 4.0073 0.1455 8 1 2.4198 4.2280 -1.3193 9 1 1.4743 5.0718 0.7486 10 1 3.6720 4.0475 0.7495 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7110 -1.4418 13 7 3.1854 -2.9795 -1.4412 14 6 4.6504 -2.9790 -1.4414 15 6 2.5120 -4.1469 -1.4406 16 8 1.2992 -4.1474 -1.4408 17 6 3.2660 -5.4517 -1.4394 18 7 2.3143 -6.5656 -1.4395 19 6 2.2607 -7.5796 -2.3205 20 7 1.2728 -8.3649 -1.9760 21 6 0.6746 -7.8871 -0.8855 22 7 1.2730 -6.7831 -0.5226 23 1 -0.3633 0.0918 1.0235 24 1 -0.3633 0.8406 -0.5913 25 1 -0.3634 -0.9323 -0.4323 26 1 -0.0150 3.0663 1.4748 27 1 1.6084 -2.0281 0.5147 28 1 3.1499 -1.1382 0.5144 29 1 3.0416 -0.9516 -1.9560 30 1 1.5000 -1.8416 -1.9556 31 1 5.0137 -2.9793 -2.4691 32 1 5.0135 -2.0887 -0.9280 33 1 5.0141 -3.8686 -0.9271 34 1 3.8924 -5.5086 -0.5493 35 1 3.8929 -5.5099 -2.3292 36 1 2.9185 -7.7211 -3.1653 37 1 -0.1707 -8.3364 -0.3854 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715535936.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:33 Heat of formation + Delta-G solvation = 98.348004 kcal Electronic energy + Delta-G solvation = -20191.835664 eV Core-core repulsion = 17008.149081 eV Total energy + Delta-G solvation = -3183.686582 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.14817 -39.75410 -36.20533 -34.98093 -34.13778 -31.56561 -31.26495 -29.33881 -27.77249 -26.46396 -25.75240 -23.66991 -22.13085 -22.06701 -20.58664 -19.22078 -17.64231 -17.20732 -16.69360 -15.95976 -15.86851 -15.27792 -14.87694 -14.59960 -14.17016 -13.72319 -13.64920 -13.43030 -13.07024 -12.76662 -12.54088 -12.34800 -12.10056 -11.91331 -11.31859 -10.87755 -10.83665 -10.54122 -10.31658 -10.20569 -10.11157 -9.91709 -9.84514 -9.83230 -9.49554 -8.76706 -8.44559 -6.73094 -5.71803 -3.20391 1.52466 2.06222 2.54455 2.90736 3.04347 3.36811 3.42364 3.43484 4.13025 4.18431 4.35162 4.49746 4.65137 4.75537 4.96967 5.14179 5.26520 5.42546 5.54091 5.66000 5.68863 6.08733 6.10140 6.24549 6.34377 6.45640 6.58814 6.62309 6.87757 6.92619 7.40741 7.42151 7.74636 7.81214 7.98132 8.16686 8.39661 9.22983 9.86490 10.36838 11.32471 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.039365 B = 0.003791 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.126124 B = 7384.789447 C = 7920.051807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.599 5.599 3 C -0.261 4.261 4 H 0.067 0.933 5 C 0.004 3.996 6 N -0.905 5.905 7 Si 0.906 3.094 8 H -0.284 1.284 9 H -0.290 1.290 10 H -0.283 1.283 11 C 0.143 3.857 12 C 0.094 3.906 13 N -0.609 5.609 14 C 0.073 3.927 15 C 0.494 3.506 16 O -0.508 6.508 17 C 0.112 3.888 18 N -0.368 5.368 19 C 0.251 3.749 20 N -0.547 5.547 21 C 0.189 3.811 22 N -0.284 5.284 23 H 0.031 0.969 24 H 0.040 0.960 25 H 0.001 0.999 26 H 0.253 0.747 27 H 0.038 0.962 28 H 0.045 0.955 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.118 0.882 35 H 0.127 0.873 36 H 0.218 0.782 37 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.098 -16.877 -7.119 20.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.322 5.322 3 C -0.391 4.391 4 H 0.085 0.915 5 C -0.195 4.195 6 N -0.549 5.549 7 Si 0.735 3.265 8 H -0.211 1.211 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.014 3.986 12 C -0.030 4.030 13 N -0.344 5.344 14 C -0.071 4.071 15 C 0.278 3.722 16 O -0.381 6.381 17 C -0.015 4.015 18 N -0.160 5.160 19 C -0.046 4.046 20 N -0.274 5.274 21 C -0.114 4.114 22 N -0.110 5.110 23 H 0.049 0.951 24 H 0.059 0.941 25 H 0.020 0.980 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.135 0.865 35 H 0.145 0.855 36 H 0.234 0.766 37 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 9.036 -16.503 -6.566 19.928 hybrid contribution 0.710 1.158 -0.328 1.397 sum 9.745 -15.345 -6.894 19.442 Atomic orbital electron populations 1.20807 0.82348 0.95572 0.99524 1.43833 1.01989 1.00357 1.86030 1.19121 0.98273 0.85639 1.36063 0.91518 1.25048 0.97848 0.98561 0.98063 1.70073 1.19328 1.27356 1.38168 0.86331 0.78415 0.83816 0.77902 1.21066 1.21596 1.20940 1.20963 0.96232 0.88807 0.92557 1.22590 0.96679 0.81589 1.02145 1.47971 1.06902 1.06491 1.73006 1.21870 0.79796 1.03631 1.01756 1.20316 0.88501 0.84968 0.78373 1.90816 1.13231 1.86486 1.47610 1.21683 0.89750 0.83796 1.06243 1.50040 1.24645 1.19677 1.21627 1.26026 0.97251 0.85560 0.95787 1.70499 1.09813 1.31286 1.15781 1.26028 1.00571 0.91346 0.93453 1.78260 1.00738 1.18015 1.14008 0.95063 0.94125 0.98045 0.93630 0.94314 0.93658 0.90551 0.90559 0.92430 0.90031 0.91542 0.86456 0.85494 0.76593 0.76755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.26 8.98 59.85 0.54 4.79 16 2 N -0.60 -15.52 2.92 -181.11 -0.53 -16.05 16 3 C -0.26 -7.18 9.65 -15.06 -0.15 -7.32 16 4 H 0.07 1.74 7.86 -52.49 -0.41 1.32 16 5 C 0.00 0.10 5.10 -17.43 -0.09 0.01 16 6 N -0.90 -26.87 10.71 55.49 0.59 -26.27 16 7 Si 0.91 21.70 29.57 -169.99 -5.03 16.68 16 8 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 9 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 C 0.14 3.05 5.97 -4.04 -0.02 3.02 16 12 C 0.09 1.67 5.73 -4.04 -0.02 1.64 16 13 N -0.61 -8.13 2.87 -181.57 -0.52 -8.65 16 14 C 0.07 0.60 10.24 59.85 0.61 1.21 16 15 C 0.49 7.03 7.71 -10.99 -0.08 6.95 16 16 O -0.51 -10.01 15.31 5.56 0.09 -9.93 16 17 C 0.11 1.00 5.59 -5.19 -0.03 0.97 16 18 N -0.37 -4.36 3.41 -63.81 -0.22 -4.58 16 19 C 0.25 2.47 12.63 -90.65 -1.14 1.32 16 20 N -0.55 -6.81 11.19 -15.83 -0.18 -6.99 16 21 C 0.19 2.43 13.03 -91.82 -1.20 1.23 16 22 N -0.28 -4.28 11.80 29.29 0.35 -3.93 16 23 H 0.03 0.88 7.34 -51.93 -0.38 0.50 16 24 H 0.04 1.11 7.34 -51.93 -0.38 0.73 16 25 H 0.00 0.02 8.03 -51.93 -0.42 -0.39 16 26 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 27 H 0.04 0.87 8.07 -51.93 -0.42 0.45 16 28 H 0.05 0.93 8.04 -51.93 -0.42 0.51 16 29 H 0.08 1.31 8.07 -51.93 -0.42 0.90 16 30 H 0.08 1.54 7.42 -51.93 -0.39 1.15 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.73 8.07 -51.93 -0.42 0.31 16 33 H 0.07 0.35 6.44 -51.93 -0.33 0.01 16 34 H 0.12 0.81 7.40 -51.93 -0.38 0.43 16 35 H 0.13 0.53 8.05 -51.93 -0.42 0.11 16 36 H 0.22 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.22 2.01 8.06 -52.48 -0.42 1.59 16 LS Contribution 318.44 15.07 4.80 4.80 Total: -1.00 -37.79 318.44 -7.43 -45.22 By element: Atomic # 1 Polarization: 1.07 SS G_CDS: -5.19 Total: -4.12 kcal Atomic # 6 Polarization: 15.41 SS G_CDS: -1.59 Total: 13.83 kcal Atomic # 7 Polarization: -65.97 SS G_CDS: -0.51 Total: -66.47 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.09 Total: -9.93 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -37.79 -7.43 -45.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715535936.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.567 kcal (2) G-P(sol) polarization free energy of solvation -37.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds