Wall clock time and date at job start Mon Mar 30 2020 00:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36932 * 120.00180 * 2 1 4 4 H 1.07996 * 120.00505 * 203.04867 * 3 2 1 5 5 C 1.38820 * 119.99637 * 23.04164 * 3 2 1 6 6 N 1.31610 * 120.00164 * 12.92967 * 5 3 2 7 7 Si 1.86801 * 119.99515 * 192.92615 * 5 3 2 8 8 H 1.48497 * 109.47311 * 60.00350 * 7 5 3 9 9 H 1.48504 * 109.46772 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47410 * 300.00227 * 7 5 3 11 11 C 1.46504 * 119.99569 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.46662 * 90.00398 * 11 2 1 13 13 N 1.46505 * 109.46869 * 179.97438 * 12 11 2 14 14 C 1.46497 * 120.00029 * 270.00077 * 13 12 11 15 15 C 1.34776 * 120.00044 * 89.99497 * 13 12 11 16 16 O 1.21281 * 119.99971 * 0.02562 * 15 13 12 17 17 C 1.50698 * 119.99856 * 180.02562 * 15 13 12 18 18 N 1.46504 * 109.46735 * 180.02562 * 17 15 13 19 19 C 1.34438 * 126.82218 * 125.00231 * 18 17 15 20 20 N 1.30823 * 108.07440 * 179.97438 * 19 18 17 21 21 C 1.33236 * 109.83399 * 0.02562 * 20 19 18 22 22 N 1.30713 * 108.94352 * 0.26074 * 21 20 19 23 23 H 1.08996 * 109.47093 * 275.12704 * 1 2 3 24 24 H 1.09005 * 109.47087 * 35.12331 * 1 2 3 25 25 H 1.09003 * 109.47347 * 155.12273 * 1 2 3 26 26 H 0.97008 * 120.00134 * 179.97438 * 6 5 3 27 27 H 1.08990 * 109.47319 * 329.99782 * 11 2 1 28 28 H 1.09003 * 109.46586 * 210.00019 * 11 2 1 29 29 H 1.08999 * 109.47885 * 59.99848 * 12 11 2 30 30 H 1.09003 * 109.47311 * 299.99178 * 12 11 2 31 31 H 1.09002 * 109.47188 * 270.00013 * 14 13 12 32 32 H 1.08997 * 109.47248 * 29.99666 * 14 13 12 33 33 H 1.08997 * 109.47255 * 149.99622 * 14 13 12 34 34 H 1.08996 * 109.47266 * 60.00062 * 17 15 13 35 35 H 1.09004 * 109.47348 * 300.00271 * 17 15 13 36 36 H 1.07996 * 125.95919 * 359.97315 * 19 18 17 37 37 H 1.08007 * 125.53021 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1651 1.2232 -0.3662 5 6 1.5387 2.3401 0.4706 6 7 0.4118 2.2597 1.1457 7 14 2.3160 4.0073 0.1455 8 1 2.4198 4.2280 -1.3193 9 1 1.4743 5.0718 0.7486 10 1 3.6720 4.0475 0.7495 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7110 -1.4418 13 7 3.1854 -2.9795 -1.4412 14 6 4.6504 -2.9790 -1.4414 15 6 2.5120 -4.1469 -1.4406 16 8 1.2992 -4.1474 -1.4408 17 6 3.2660 -5.4517 -1.4394 18 7 2.3143 -6.5656 -1.4395 19 6 2.2607 -7.5796 -2.3205 20 7 1.2728 -8.3649 -1.9760 21 6 0.6746 -7.8871 -0.8855 22 7 1.2730 -6.7831 -0.5226 23 1 -0.3633 0.0918 1.0235 24 1 -0.3633 0.8406 -0.5913 25 1 -0.3634 -0.9323 -0.4323 26 1 -0.0150 3.0663 1.4748 27 1 1.6084 -2.0281 0.5147 28 1 3.1499 -1.1382 0.5144 29 1 3.0416 -0.9516 -1.9560 30 1 1.5000 -1.8416 -1.9556 31 1 5.0137 -2.9793 -2.4691 32 1 5.0135 -2.0887 -0.9280 33 1 5.0141 -3.8686 -0.9271 34 1 3.8924 -5.5086 -0.5493 35 1 3.8929 -5.5099 -2.3292 36 1 2.9185 -7.7211 -3.1653 37 1 -0.1707 -8.3364 -0.3854 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715535936.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:32 Heat of formation + Delta-G solvation = 72.724359 kcal Electronic energy + Delta-G solvation = -20192.946788 eV Core-core repulsion = 17008.149081 eV Total energy + Delta-G solvation = -3184.797707 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.98081 -40.87102 -37.88261 -36.43876 -35.02344 -33.48567 -32.14647 -30.78536 -28.77419 -28.02834 -27.35609 -25.22997 -23.21846 -22.86717 -22.34727 -20.29440 -18.81128 -18.47163 -18.11053 -17.27354 -16.85418 -16.60113 -16.17085 -15.66938 -15.55066 -15.18344 -15.01681 -14.59441 -14.23584 -14.08334 -13.92631 -13.60146 -13.16364 -13.06381 -12.82539 -12.75680 -12.67881 -12.50313 -12.19719 -11.94681 -11.67768 -11.30343 -10.99176 -10.76165 -10.70751 -10.47117 -9.80140 -8.79803 -7.84477 -5.37117 0.71603 1.34251 1.46724 1.50489 1.52624 1.57227 2.00413 2.08380 2.51305 3.28750 3.33000 3.55271 3.70144 3.73028 4.06068 4.09410 4.12981 4.36930 4.41159 4.44025 4.62266 4.73131 4.80857 4.88116 5.00856 5.07678 5.23928 5.26365 5.47900 5.52242 5.56395 5.61989 5.91523 6.28027 6.39718 7.08233 7.11498 7.16342 7.79065 8.27681 9.19481 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.039365 B = 0.003791 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.126124 B = 7384.789447 C = 7920.051807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.617 5.617 3 C -0.269 4.269 4 H 0.083 0.917 5 C -0.057 4.057 6 N -0.944 5.944 7 Si 0.978 3.022 8 H -0.275 1.275 9 H -0.298 1.298 10 H -0.269 1.269 11 C 0.149 3.851 12 C 0.115 3.885 13 N -0.607 5.607 14 C 0.064 3.936 15 C 0.486 3.514 16 O -0.575 6.575 17 C 0.117 3.883 18 N -0.378 5.378 19 C 0.265 3.735 20 N -0.577 5.577 21 C 0.183 3.817 22 N -0.342 5.342 23 H 0.003 0.997 24 H 0.020 0.980 25 H 0.013 0.987 26 H 0.248 0.752 27 H 0.018 0.982 28 H 0.055 0.945 29 H 0.085 0.915 30 H 0.045 0.955 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.144 0.856 35 H 0.188 0.812 36 H 0.272 0.728 37 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.671 -17.776 -8.774 24.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.341 5.341 3 C -0.398 4.398 4 H 0.101 0.899 5 C -0.252 4.252 6 N -0.590 5.590 7 Si 0.805 3.195 8 H -0.201 1.201 9 H -0.225 1.225 10 H -0.194 1.194 11 C 0.021 3.979 12 C -0.011 4.011 13 N -0.341 5.341 14 C -0.077 4.077 15 C 0.273 3.727 16 O -0.453 6.453 17 C -0.007 4.007 18 N -0.169 5.169 19 C -0.031 4.031 20 N -0.304 5.304 21 C -0.120 4.120 22 N -0.169 5.169 23 H 0.021 0.979 24 H 0.039 0.961 25 H 0.032 0.968 26 H 0.058 0.942 27 H 0.036 0.964 28 H 0.073 0.927 29 H 0.104 0.896 30 H 0.063 0.937 31 H 0.105 0.895 32 H 0.092 0.908 33 H 0.123 0.877 34 H 0.161 0.839 35 H 0.205 0.795 36 H 0.287 0.713 37 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 12.704 -17.439 -8.238 23.095 hybrid contribution -0.346 1.355 0.168 1.409 sum 12.358 -16.083 -8.070 21.829 Atomic orbital electron populations 1.20465 0.83335 0.95172 0.97442 1.44075 1.01839 1.01797 1.86408 1.19586 0.98878 0.86212 1.35133 0.89934 1.25960 0.98568 1.02468 0.98172 1.70267 1.21101 1.27888 1.39757 0.85192 0.77732 0.78640 0.77959 1.20109 1.22469 1.19447 1.21034 0.95512 0.86397 0.94925 1.21899 0.96308 0.84208 0.98684 1.48000 1.09027 1.04718 1.72321 1.22264 0.75996 1.05231 1.04228 1.21338 0.88092 0.86717 0.76573 1.90796 1.16413 1.87568 1.50547 1.22046 0.88708 0.79618 1.10332 1.50191 1.24518 1.20742 1.21484 1.27076 0.96432 0.83894 0.95666 1.70509 1.11169 1.32679 1.16093 1.26456 1.00865 0.90933 0.93707 1.78163 1.02867 1.19303 1.16523 0.97851 0.96128 0.96838 0.94247 0.96386 0.92682 0.89632 0.93677 0.89451 0.90787 0.87716 0.83851 0.79542 0.71277 0.75160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.94 8.98 127.77 1.15 11.09 16 2 N -0.62 -32.59 2.92 -726.92 -2.12 -34.72 16 3 C -0.27 -14.71 9.65 84.04 0.81 -13.90 16 4 H 0.08 4.17 7.86 -2.91 -0.02 4.15 16 5 C -0.06 -3.21 5.10 84.87 0.43 -2.78 16 6 N -0.94 -57.60 10.71 21.65 0.23 -57.37 16 7 Si 0.98 44.59 29.57 68.60 2.03 46.62 16 8 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 9 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 10 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 11 C 0.15 6.37 5.97 86.38 0.52 6.89 16 12 C 0.11 4.01 5.73 86.38 0.50 4.50 16 13 N -0.61 -14.83 2.87 -846.76 -2.43 -17.26 16 14 C 0.06 0.75 10.24 127.77 1.31 2.06 16 15 C 0.49 12.98 7.71 87.66 0.68 13.66 16 16 O -0.57 -23.08 15.31 -3.03 -0.05 -23.13 16 17 C 0.12 1.61 5.59 85.63 0.48 2.09 16 18 N -0.38 -8.03 3.41 -355.80 -1.21 -9.24 16 19 C 0.26 4.37 12.63 180.36 2.28 6.65 16 20 N -0.58 -13.54 11.19 -204.00 -2.28 -15.82 16 21 C 0.18 4.71 13.03 180.77 2.36 7.06 16 22 N -0.34 -10.25 11.80 -61.24 -0.72 -10.98 16 23 H 0.00 0.19 7.34 -2.39 -0.02 0.17 16 24 H 0.02 1.16 7.34 -2.38 -0.02 1.15 16 25 H 0.01 0.67 8.03 -2.39 -0.02 0.65 16 26 H 0.25 14.71 8.31 -92.70 -0.77 13.94 16 27 H 0.02 0.83 8.07 -2.39 -0.02 0.81 16 28 H 0.05 2.22 8.04 -2.39 -0.02 2.21 16 29 H 0.09 2.82 8.07 -2.39 -0.02 2.80 16 30 H 0.04 1.86 7.42 -2.39 -0.02 1.85 16 31 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.07 1.04 8.07 -2.39 -0.02 1.02 16 33 H 0.10 0.47 6.44 -2.39 -0.02 0.45 16 34 H 0.14 1.26 7.40 -2.39 -0.02 1.25 16 35 H 0.19 0.27 8.05 -2.38 -0.02 0.25 16 36 H 0.27 0.90 8.06 -2.91 -0.02 0.88 16 37 H 0.23 4.47 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -88.38 318.44 4.99 -83.39 By element: Atomic # 1 Polarization: 0.13 SS G_CDS: 1.06 Total: 1.19 kcal Atomic # 6 Polarization: 26.82 SS G_CDS: 10.50 Total: 37.31 kcal Atomic # 7 Polarization: -136.84 SS G_CDS: -8.54 Total: -145.39 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.05 Total: -23.13 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -88.38 4.99 -83.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715535936.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.111 kcal (2) G-P(sol) polarization free energy of solvation -88.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds