Wall clock time and date at job start Mon Mar 30 2020 00:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.53004 * 109.47236 * 184.99998 * 4 2 1 6 6 N 1.46499 * 109.47194 * 180.02562 * 5 4 2 7 7 C 1.36941 * 119.99832 * 180.02562 * 6 5 4 8 8 H 1.07998 * 120.00210 * 359.97438 * 7 6 5 9 9 C 1.38814 * 119.99738 * 179.97438 * 7 6 5 10 10 N 1.31619 * 119.99638 * 179.97438 * 9 7 6 11 11 Si 1.86794 * 120.00259 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.47209 * 89.99862 * 11 9 7 13 13 H 1.48502 * 109.47232 * 210.00145 * 11 9 7 14 14 H 1.48506 * 109.47263 * 330.00248 * 11 9 7 15 15 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 16 16 C 1.34769 * 119.99686 * 84.99974 * 15 2 1 17 17 O 1.21591 * 120.00299 * 359.97438 * 16 15 2 18 18 C 1.47527 * 119.99746 * 180.02562 * 16 15 2 19 19 C 1.36593 * 125.77299 * 179.71649 * 18 16 15 20 20 N 1.34810 * 106.84167 * 179.89751 * 19 18 16 21 21 C 1.46501 * 126.59541 * 180.13230 * 20 19 18 22 22 N 1.40206 * 106.81147 * 0.35741 * 20 19 18 23 23 N 1.28761 * 108.36624 * 359.77381 * 22 20 19 24 24 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 25 25 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 26 26 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 28 28 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 29 29 H 1.09001 * 109.46917 * 300.00567 * 5 4 2 30 30 H 1.09004 * 109.46741 * 59.99889 * 5 4 2 31 31 H 0.96997 * 120.00325 * 359.97438 * 6 5 4 32 32 H 0.97001 * 119.99760 * 179.97438 * 10 9 7 33 33 H 0.97000 * 119.99634 * 265.00306 * 15 2 1 34 34 H 1.07999 * 126.57901 * 0.04283 * 19 18 16 35 35 H 1.08995 * 109.47188 * 270.29096 * 21 20 19 36 36 H 1.08995 * 109.47125 * 30.29668 * 21 20 19 37 37 H 1.09000 * 109.47119 * 150.29663 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3138 6 7 4.0531 -1.3044 2.5097 7 6 5.3951 -1.3404 2.7796 8 1 6.0936 -0.8597 2.1107 9 6 5.8578 -1.9948 3.9131 10 7 7.1477 -2.0298 4.1722 11 14 4.6497 -2.8256 5.0704 12 1 4.4444 -4.2334 4.6445 13 1 5.1914 -2.8007 6.4528 14 1 3.3526 -2.1034 5.0339 15 7 2.0184 -0.6906 -1.1962 16 6 2.1472 -0.0183 -2.3570 17 8 1.8575 1.1614 -2.4118 18 6 2.6384 -0.7138 -3.5617 19 6 2.8084 -0.1516 -4.7949 20 7 3.2731 -1.1227 -5.6063 21 6 3.6068 -0.9889 -7.0265 22 7 3.3706 -2.2868 -4.8309 23 7 2.9890 -2.0094 -3.6328 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6053 -0.2617 2.1370 28 1 1.7516 -1.7715 1.2056 29 1 3.9994 -1.0728 0.4261 30 1 3.8531 0.4370 1.3574 31 1 3.4258 -1.7358 3.1107 32 1 7.4710 -2.4868 4.9645 33 1 2.2491 -1.6318 -1.1525 34 1 2.6108 0.8747 -5.0671 35 1 2.7240 -1.2029 -7.6289 36 1 3.9452 0.0278 -7.2259 37 1 4.3996 -1.6922 -7.2812 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715643475.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:42 Heat of formation + Delta-G solvation = 69.954816 kcal Electronic energy + Delta-G solvation = -19722.373156 eV Core-core repulsion = 16537.455352 eV Total energy + Delta-G solvation = -3184.917804 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.38114 -39.54307 -36.57397 -34.94864 -34.42950 -32.03161 -31.29004 -30.54446 -28.26621 -28.07542 -24.37737 -23.53965 -22.46779 -21.41358 -20.92916 -20.38014 -18.35763 -17.47356 -16.50973 -16.38255 -16.16963 -14.97190 -14.87011 -14.48124 -14.32334 -14.05369 -13.67820 -13.59604 -13.43867 -13.26790 -12.57395 -12.50693 -12.34017 -12.00289 -11.49332 -11.46199 -11.16655 -10.85676 -10.69007 -10.64945 -10.45997 -10.10282 -10.09065 -9.54544 -9.51772 -8.99487 -8.82677 -7.17894 -5.71791 -3.07174 0.91030 1.58772 1.78016 3.15265 3.27429 3.41282 3.43864 3.48788 4.04254 4.06465 4.53064 4.54624 4.63686 4.73990 4.83657 4.86489 5.12200 5.20131 5.31567 5.55790 5.56205 5.68627 5.69334 5.85114 5.98488 5.99717 6.05033 6.21042 6.27022 6.52617 6.78849 6.82153 7.47948 7.79494 8.05167 8.20154 8.47255 9.26635 9.98825 10.18812 11.46843 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.021373 B = 0.003997 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.729725 B = 7004.090157 C = 7850.658190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.146 3.854 3 H 0.093 0.907 4 C -0.140 4.140 5 C 0.157 3.843 6 N -0.757 5.757 7 C -0.243 4.243 8 H 0.089 0.911 9 C 0.002 3.998 10 N -0.936 5.936 11 Si 0.886 3.114 12 H -0.284 1.284 13 H -0.291 1.291 14 H -0.277 1.277 15 N -0.703 5.703 16 C 0.606 3.394 17 O -0.544 6.544 18 C -0.099 4.099 19 C 0.091 3.909 20 N -0.366 5.366 21 C 0.088 3.912 22 N -0.065 5.065 23 N -0.200 5.200 24 H 0.067 0.933 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.029 0.971 30 H 0.026 0.974 31 H 0.360 0.640 32 H 0.259 0.741 33 H 0.410 0.590 34 H 0.205 0.795 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.488 3.952 -22.028 26.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.111 0.889 4 C -0.178 4.178 5 C 0.029 3.971 6 N -0.403 5.403 7 C -0.373 4.373 8 H 0.107 0.893 9 C -0.193 4.193 10 N -0.584 5.584 11 Si 0.717 3.283 12 H -0.211 1.211 13 H -0.218 1.218 14 H -0.203 1.203 15 N -0.353 5.353 16 C 0.390 3.610 17 O -0.421 6.421 18 C -0.239 4.239 19 C -0.066 4.066 20 N -0.151 5.151 21 C -0.053 4.053 22 N -0.046 5.046 23 N -0.074 5.074 24 H 0.086 0.914 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.098 0.902 28 H 0.087 0.913 29 H 0.047 0.953 30 H 0.044 0.956 31 H 0.193 0.807 32 H 0.069 0.931 33 H 0.246 0.754 34 H 0.222 0.778 35 H 0.107 0.893 36 H 0.116 0.884 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.050 3.358 -22.112 25.894 hybrid contribution -0.749 -0.066 0.683 1.016 sum -13.800 3.291 -21.429 25.699 Atomic orbital electron populations 1.22170 0.95248 1.02131 1.02402 1.21014 0.93687 0.97789 0.83384 0.88941 1.22122 0.98120 1.00969 0.96570 1.20632 0.90177 0.95976 0.90266 1.42710 1.05276 1.66285 1.25994 1.19075 0.82223 1.29210 1.06747 0.89310 1.24684 0.95627 1.00747 0.98262 1.69710 1.11742 1.48337 1.28596 0.86511 0.80929 0.79830 0.81045 1.21078 1.21784 1.20319 1.45914 1.65724 1.14744 1.08960 1.16712 0.77142 0.85506 0.81613 1.90791 1.51636 1.14820 1.84832 1.21542 1.14615 0.91596 0.96117 1.23364 0.96353 0.96701 0.90140 1.50395 1.44525 1.08676 1.11520 1.22191 1.03498 1.05134 0.74496 1.82038 1.21974 1.04353 0.96199 1.74669 1.08006 1.13099 1.11621 0.91432 0.92255 0.92452 0.90158 0.91252 0.95343 0.95573 0.80710 0.93109 0.75414 0.77815 0.89262 0.88371 0.88010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 9.48 37.16 0.35 -1.46 16 2 C 0.15 1.94 2.57 -67.93 -0.17 1.77 16 3 H 0.09 1.35 7.58 -51.93 -0.39 0.95 16 4 C -0.14 -2.08 4.87 -26.73 -0.13 -2.21 16 5 C 0.16 3.11 6.15 -4.04 -0.02 3.09 16 6 N -0.76 -18.56 5.41 -59.90 -0.32 -18.88 16 7 C -0.24 -7.13 10.47 -15.06 -0.16 -7.28 16 8 H 0.09 2.80 8.06 -52.49 -0.42 2.38 16 9 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 10 N -0.94 -30.13 13.97 55.49 0.78 -29.35 16 11 Si 0.89 22.54 27.73 -169.99 -4.71 17.82 16 12 H -0.28 -7.16 7.11 56.52 0.40 -6.75 16 13 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 14 H -0.28 -6.58 6.52 56.52 0.37 -6.21 16 15 N -0.70 -9.57 4.53 -54.85 -0.25 -9.82 16 16 C 0.61 8.62 7.78 -12.48 -0.10 8.52 16 17 O -0.54 -8.69 16.53 5.29 0.09 -8.60 16 18 C -0.10 -1.27 6.99 -83.55 -0.58 -1.86 16 19 C 0.09 0.85 11.31 -16.84 -0.19 0.66 16 20 N -0.37 -3.19 4.03 -67.86 -0.27 -3.47 16 21 C 0.09 0.28 11.51 59.85 0.69 0.97 16 22 N -0.06 -0.83 13.78 60.35 0.83 0.01 16 23 N -0.20 -2.82 12.04 32.85 0.40 -2.42 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.03 0.59 7.75 -51.93 -0.40 0.18 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.36 8.50 5.53 -40.82 -0.23 8.27 16 32 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 33 H 0.41 5.46 8.29 -40.82 -0.34 5.13 16 34 H 0.21 1.21 8.06 -52.49 -0.42 0.79 16 35 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 36 H 0.10 0.07 8.14 -51.93 -0.42 -0.35 16 37 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 322.25 15.07 4.86 4.86 Total: -1.00 -36.92 322.25 -4.21 -41.12 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -5.18 Total: 6.56 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -0.41 Total: 2.18 kcal Atomic # 7 Polarization: -65.09 SS G_CDS: 1.16 Total: -63.93 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.09 Total: -8.60 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.71 Total: 17.82 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -36.92 -4.21 -41.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715643475.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.077 kcal (2) G-P(sol) polarization free energy of solvation -36.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds