Wall clock time and date at job start Mon Mar 30 2020 00:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.53004 * 109.47236 * 184.99998 * 4 2 1 6 6 N 1.46499 * 109.47194 * 180.02562 * 5 4 2 7 7 C 1.36941 * 119.99832 * 180.02562 * 6 5 4 8 8 H 1.07998 * 120.00210 * 359.97438 * 7 6 5 9 9 C 1.38814 * 119.99738 * 179.97438 * 7 6 5 10 10 N 1.31619 * 119.99638 * 179.97438 * 9 7 6 11 11 Si 1.86794 * 120.00259 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.47209 * 89.99862 * 11 9 7 13 13 H 1.48502 * 109.47232 * 210.00145 * 11 9 7 14 14 H 1.48506 * 109.47263 * 330.00248 * 11 9 7 15 15 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 16 16 C 1.34769 * 119.99686 * 84.99974 * 15 2 1 17 17 O 1.21591 * 120.00299 * 359.97438 * 16 15 2 18 18 C 1.47527 * 119.99746 * 180.02562 * 16 15 2 19 19 C 1.36593 * 125.77299 * 179.71649 * 18 16 15 20 20 N 1.34810 * 106.84167 * 179.89751 * 19 18 16 21 21 C 1.46501 * 126.59541 * 180.13230 * 20 19 18 22 22 N 1.40206 * 106.81147 * 0.35741 * 20 19 18 23 23 N 1.28761 * 108.36624 * 359.77381 * 22 20 19 24 24 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 25 25 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 26 26 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 28 28 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 29 29 H 1.09001 * 109.46917 * 300.00567 * 5 4 2 30 30 H 1.09004 * 109.46741 * 59.99889 * 5 4 2 31 31 H 0.96997 * 120.00325 * 359.97438 * 6 5 4 32 32 H 0.97001 * 119.99760 * 179.97438 * 10 9 7 33 33 H 0.97000 * 119.99634 * 265.00306 * 15 2 1 34 34 H 1.07999 * 126.57901 * 0.04283 * 19 18 16 35 35 H 1.08995 * 109.47188 * 270.29096 * 21 20 19 36 36 H 1.08995 * 109.47125 * 30.29668 * 21 20 19 37 37 H 1.09000 * 109.47119 * 150.29663 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3138 6 7 4.0531 -1.3044 2.5097 7 6 5.3951 -1.3404 2.7796 8 1 6.0936 -0.8597 2.1107 9 6 5.8578 -1.9948 3.9131 10 7 7.1477 -2.0298 4.1722 11 14 4.6497 -2.8256 5.0704 12 1 4.4444 -4.2334 4.6445 13 1 5.1914 -2.8007 6.4528 14 1 3.3526 -2.1034 5.0339 15 7 2.0184 -0.6906 -1.1962 16 6 2.1472 -0.0183 -2.3570 17 8 1.8575 1.1614 -2.4118 18 6 2.6384 -0.7138 -3.5617 19 6 2.8084 -0.1516 -4.7949 20 7 3.2731 -1.1227 -5.6063 21 6 3.6068 -0.9889 -7.0265 22 7 3.3706 -2.2868 -4.8309 23 7 2.9890 -2.0094 -3.6328 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6053 -0.2617 2.1370 28 1 1.7516 -1.7715 1.2056 29 1 3.9994 -1.0728 0.4261 30 1 3.8531 0.4370 1.3574 31 1 3.4258 -1.7358 3.1107 32 1 7.4710 -2.4868 4.9645 33 1 2.2491 -1.6318 -1.1525 34 1 2.6108 0.8747 -5.0671 35 1 2.7240 -1.2029 -7.6289 36 1 3.9452 0.0278 -7.2259 37 1 4.3996 -1.6922 -7.2812 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715643475.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:42 Heat of formation + Delta-G solvation = 40.418582 kcal Electronic energy + Delta-G solvation = -19723.653943 eV Core-core repulsion = 16537.455352 eV Total energy + Delta-G solvation = -3186.198591 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.20842 -40.63012 -37.92330 -36.20378 -35.60984 -33.75991 -32.64543 -31.60632 -29.72631 -28.64457 -25.80456 -24.88902 -23.24987 -23.08579 -22.09050 -21.42412 -19.77791 -19.08002 -17.44910 -17.23325 -17.05417 -16.57314 -16.02590 -15.68622 -15.63636 -15.46445 -15.02113 -14.76359 -14.30334 -14.17023 -13.96027 -13.80138 -13.30580 -13.13111 -12.96634 -12.92000 -12.38887 -12.25939 -12.21150 -11.99618 -11.81384 -11.73731 -11.32934 -11.20522 -10.98031 -10.42374 -10.03447 -9.31435 -8.03705 -5.38412 0.15890 0.60750 1.19365 1.38716 1.43938 1.51190 2.15064 2.25643 2.49140 3.20034 3.27480 3.44470 3.52066 3.89201 3.97145 4.03304 4.11828 4.27614 4.37920 4.50080 4.56568 4.63081 4.68302 4.76801 4.77610 4.88816 5.02060 5.20335 5.26080 5.35509 5.45989 5.54396 5.73318 6.20073 6.42847 6.89283 7.06970 7.14093 7.81618 8.03554 9.18140 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.021373 B = 0.003997 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.729725 B = 7004.090157 C = 7850.658190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.149 3.851 3 H 0.078 0.922 4 C -0.124 4.124 5 C 0.155 3.845 6 N -0.757 5.757 7 C -0.242 4.242 8 H 0.048 0.952 9 C -0.067 4.067 10 N -0.986 5.986 11 Si 0.964 3.036 12 H -0.276 1.276 13 H -0.295 1.295 14 H -0.245 1.245 15 N -0.704 5.704 16 C 0.605 3.395 17 O -0.567 6.567 18 C -0.129 4.129 19 C 0.110 3.890 20 N -0.352 5.352 21 C 0.074 3.926 22 N -0.097 5.097 23 N -0.230 5.230 24 H 0.083 0.917 25 H 0.052 0.948 26 H 0.067 0.933 27 H 0.095 0.905 28 H 0.082 0.918 29 H 0.018 0.982 30 H 0.015 0.985 31 H 0.369 0.631 32 H 0.259 0.741 33 H 0.411 0.589 34 H 0.241 0.759 35 H 0.111 0.889 36 H 0.130 0.870 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.938 4.031 -22.826 28.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.045 3.955 3 H 0.096 0.904 4 C -0.162 4.162 5 C 0.028 3.972 6 N -0.403 5.403 7 C -0.373 4.373 8 H 0.066 0.934 9 C -0.258 4.258 10 N -0.636 5.636 11 Si 0.790 3.210 12 H -0.202 1.202 13 H -0.221 1.221 14 H -0.170 1.170 15 N -0.354 5.354 16 C 0.390 3.610 17 O -0.446 6.446 18 C -0.270 4.270 19 C -0.049 4.049 20 N -0.136 5.136 21 C -0.064 4.064 22 N -0.077 5.077 23 N -0.103 5.103 24 H 0.102 0.898 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.114 0.886 28 H 0.101 0.899 29 H 0.037 0.963 30 H 0.033 0.967 31 H 0.203 0.797 32 H 0.068 0.932 33 H 0.247 0.753 34 H 0.257 0.743 35 H 0.129 0.871 36 H 0.148 0.852 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -15.531 3.426 -22.967 27.936 hybrid contribution 0.116 -0.005 0.739 0.748 sum -15.415 3.421 -22.228 27.265 Atomic orbital electron populations 1.22087 0.93014 1.02993 1.02919 1.20972 0.95273 0.96666 0.82614 0.90362 1.21994 0.93927 1.02284 0.98018 1.20756 0.93838 0.94489 0.88081 1.42669 1.03480 1.66705 1.27473 1.19026 0.83988 1.28269 1.05999 0.93386 1.25625 0.97770 1.01955 1.00434 1.69910 1.14398 1.49826 1.29489 0.85288 0.79313 0.78849 0.77596 1.20210 1.22147 1.16957 1.45968 1.65623 1.14759 1.09083 1.16908 0.76670 0.85289 0.82085 1.90763 1.52880 1.15633 1.85302 1.21600 1.16601 0.91813 0.96964 1.23880 0.94262 0.97829 0.88899 1.50757 1.42587 1.07322 1.12955 1.22732 1.04806 1.07356 0.71542 1.81927 1.23133 1.06296 0.96367 1.74623 1.09005 1.14014 1.12639 0.89798 0.92844 0.91392 0.88636 0.89902 0.96346 0.96711 0.79725 0.93233 0.75344 0.74316 0.87091 0.85187 0.87553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 9.48 71.98 0.68 -2.38 16 2 C 0.15 3.80 2.57 44.99 0.12 3.91 16 3 H 0.08 2.24 7.58 -2.39 -0.02 2.22 16 4 C -0.12 -3.46 4.87 30.59 0.15 -3.31 16 5 C 0.15 6.12 6.15 86.38 0.53 6.65 16 6 N -0.76 -36.58 5.41 -343.44 -1.86 -38.44 16 7 C -0.24 -14.48 10.47 84.03 0.88 -13.60 16 8 H 0.05 3.19 8.06 -2.91 -0.02 3.17 16 9 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 10 N -0.99 -65.05 13.97 21.65 0.30 -64.75 16 11 Si 0.96 46.04 27.73 68.60 1.90 47.94 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 13 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 14 H -0.25 -10.35 6.52 99.48 0.65 -9.70 16 15 N -0.70 -18.96 4.53 -445.71 -2.02 -20.98 16 16 C 0.61 17.13 7.78 86.69 0.67 17.80 16 17 O -0.57 -17.89 16.53 -4.00 -0.07 -17.96 16 18 C -0.13 -3.28 6.99 40.82 0.29 -3.00 16 19 C 0.11 1.86 11.31 83.85 0.95 2.81 16 20 N -0.35 -5.52 4.03 -368.61 -1.49 -7.01 16 21 C 0.07 0.26 11.51 127.77 1.47 1.73 16 22 N -0.10 -2.43 13.78 37.02 0.51 -1.92 16 23 N -0.23 -6.54 12.04 -49.99 -0.60 -7.15 16 24 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.02 0.77 7.75 -2.39 -0.02 0.75 16 30 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.37 16.47 5.53 -92.71 -0.51 15.96 16 32 H 0.26 16.15 8.31 -92.71 -0.77 15.38 16 33 H 0.41 10.94 8.29 -92.71 -0.77 10.17 16 34 H 0.24 2.11 8.06 -2.91 -0.02 2.08 16 35 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 36 H 0.13 -0.31 8.14 -2.39 -0.02 -0.33 16 37 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 Total: -1.00 -82.60 322.25 2.64 -79.96 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: -0.25 Total: 23.27 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: 6.20 Total: 7.03 kcal Atomic # 7 Polarization: -135.09 SS G_CDS: -5.15 Total: -140.24 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -0.07 Total: -17.96 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 1.90 Total: 47.94 kcal Total: -82.60 2.64 -79.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715643475.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.376 kcal (2) G-P(sol) polarization free energy of solvation -82.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds